From e5757877ab4ba07c8514dfb5a838662ba31d4131 Mon Sep 17 00:00:00 2001 From: schwabjohannes Date: Thu, 19 Dec 2024 08:06:15 +0100 Subject: [PATCH] Update README.md --- README.md | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/README.md b/README.md index 6f09ccd..96bee8c 100644 --- a/README.md +++ b/README.md @@ -41,7 +41,11 @@ A modified version of Dynamight estimates rigid deformations for user defined bo $$ D_z(x) = \sum_{i=1}^N \sum_{j=1}^{N_i} \varphi_j(R_{i,z}(x)),$$ where $N_i$ is the number of Gaussians within mask $m_i$ and $R_{i,z}$ is the rigid transform that is estimated for mask $m_i$ from the latent representation $z$. +This modified version can be run from the command line using +**dynamight optimize-deformations-rigid run_data.star /dataset/output --initial-model map.mrc --deformations-masks mask_folder** + +where mask_folder contains the binary masks used for splitting up the Gaussians. ### Visualization