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relion ver5.0 install failed #1199

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gaorongchao opened this issue Nov 11, 2024 · 0 comments
Open

relion ver5.0 install failed #1199

gaorongchao opened this issue Nov 11, 2024 · 0 comments

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@gaorongchao
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relion ver5.0 install failed:

In file included from /usr/include/X11/Xlocale.h:35:0,
                 from ../FL/fl_utf8.h:64,
                 from ../FL/Fl.H:32,
                 from ../FL/Fl_File_Chooser.H:30,
                 from ../FL/Fl_Native_File_Chooser.H:48,
                 from Fl_Native_File_Chooser_FLTK.cxx:20,
                 from Fl_Native_File_Chooser.cxx:31:
Fl_Native_File_Chooser_GTK.cxx: In member function ‘virtual int Fl_GTK_File_Chooser::show()’:
Fl_Native_File_Chooser_GTK.cxx:380:17: error: ‘__LC_ALL’ was not declared in this scope
   p = setlocale(LC_ALL, NULL);
                 ^
Fl_Native_File_Chooser_GTK.cxx:380:17: note: suggested alternative: ‘LC_ALL’
In file included from /usr/include/X11/Xlocale.h:35:0,
                 from ../FL/fl_utf8.h:64,
                 from ../FL/Fl.H:32,
                 from Fl_PostScript.cxx:21:
Fl_PostScript.cxx: In member function ‘int Fl_PostScript_Graphics_Driver::clocale_printf(const char*, ...)’:
Fl_PostScript.cxx:158:34: error: ‘__LC_NUMERIC’ was not declared in this scope
   char *saved_locale = setlocale(LC_NUMERIC, NULL);
                                  ^
Fl_PostScript.cxx:158:34: note: suggested alternative: ‘LC_NUMERIC’
Compiling Fl_Scrollbar.cxx...
Compiling Fl_Shared_Image.cxx...
Compiling Fl_Single_Window.cxx...
make[4]: *** [../makeinclude:161: Fl_Native_File_Chooser.o] Error 1
make[4]: *** Waiting for unfinished jobs....
make[4]: *** [../makeinclude:161: Fl_PostScript.o] Error 1
[ 69%] Built target relion_lib
[ 69%] Building NVCC (Device) object src/apps/CMakeFiles/relion_jaz_gpu_util.dir/__/jaz/cuda/./relion_jaz_gpu_util_generated_test00.cu.o
make[3]: *** [Makefile:24: all] Error 1
make[2]: *** [CMakeFiles/OWN_FLTK.dir/build.make:114: OWN_FLTK-prefix/src/OWN_FLTK-stamp/OWN_FLTK-build] Error 2
make[1]: *** [CMakeFiles/Makefile2:64: CMakeFiles/OWN_FLTK.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
Scanning dependencies of target relion_jaz_gpu_util
Linking CXX static library ../../lib/librelion_jaz_gpu_util.a

gcc:

Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/opt/rh/devtoolset-7/root/usr/libexec/gcc/x86_64-redhat-linux/7/lto-wrapper
Target: x86_64-redhat-linux
Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/opt/rh/devtoolset-7/root/usr --mandir=/opt/rh/devtoolset-7/root/usr/share/man --infodir=/opt/rh/devtoolset-7/root/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --enable-plugin --with-linker-hash-style=gnu --enable-initfini-array --with-default-libstdcxx-abi=gcc4-compatible --with-isl=/builddir/build/BUILD/gcc-7.3.1-20180303/obj-x86_64-redhat-linux/isl-install --enable-libmpx --enable-gnu-indirect-function --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
Thread model: posix
gcc version 7.3.1 20180303 (Red Hat 7.3.1-5) (GCC) 

nvcc

nvcc: NVIDIA (R) Cuda compiler driver
Copyright (c) 2005-2019 NVIDIA Corporation
Built on Sun_Jul_28_19:07:16_PDT_2019
Cuda compilation tools, release 10.1, V10.1.243

openmpi 4.1.0
CentOS Linux release 7.9.2009 (Core)

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