From 3c14ab0f11ee6eed12ce7a934095d27015abe9cd Mon Sep 17 00:00:00 2001 From: aschroed Date: Wed, 21 Aug 2024 18:08:20 -0400 Subject: [PATCH] removed pdb; version bump; changelog --- CHANGELOG.rst | 7 +++++++ chalicelib_fourfront/checks/wrangler_checks.py | 3 +-- pyproject.toml | 2 +- 3 files changed, 9 insertions(+), 3 deletions(-) diff --git a/CHANGELOG.rst b/CHANGELOG.rst index 7c34bf9a..c7f4c6f4 100644 --- a/CHANGELOG.rst +++ b/CHANGELOG.rst @@ -7,6 +7,13 @@ foursight Change Log ---------- +4.8.3 +===== + +* Update entrez_gene_id validation check to play more nicely with ncbi +* add kwargs so gids can be added or removed from the ignore list - for those genes without any status live or other + + 4.8.2 ===== diff --git a/chalicelib_fourfront/checks/wrangler_checks.py b/chalicelib_fourfront/checks/wrangler_checks.py index 4f099d02..ee2101c3 100644 --- a/chalicelib_fourfront/checks/wrangler_checks.py +++ b/chalicelib_fourfront/checks/wrangler_checks.py @@ -1080,7 +1080,7 @@ def validate_entrez_geneids(connection, **kwargs): return check # because until this update this check had no full_output need this (only once) - if not 'full_output' in last_result: + if 'full_output' not in last_result: last_result['full_output'] = {} # gids to ignore list gids2ignore = last_result['full_output'].get('ignore', []) @@ -1091,7 +1091,6 @@ def validate_entrez_geneids(connection, **kwargs): gids2ignore.extend([ni.strip() for ni in new_ignores.split(',') if ni not in gids2ignore]) rm_ignores = kwargs.get('rm_from_ignore') if rm_ignores: - import pdb; pdb.set_trace() if rm_ignores == 'all': # reset ignore list gids2ignore = [] diff --git a/pyproject.toml b/pyproject.toml index b2175a10..0cc8edd8 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "foursight" -version = "4.9.0" +version = "4.8.3" description = "Serverless Chalice Application for Monitoring" authors = ["4DN-DCIC Team "] license = "MIT"