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VCF files #4

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lfalquet opened this issue Mar 18, 2014 · 1 comment
Open

VCF files #4

lfalquet opened this issue Mar 18, 2014 · 1 comment

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@lfalquet
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Hi Wai,

All generated VCF files should be compatible with the VCF format 4.1.
In addition I would also filter out all the calls that are below 20bp since they create a lot of noise in the merged VCF and they are beyond our scope of large structural variants.

Cheers
Laurent
@wyleung
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wyleung commented Jun 17, 2014

List of candidates for change:

SVdetect - vcf writer
Breakdancer - vcf writer

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@wyleung @lfalquet