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i downloaded the allbiotc2 using git. When i try with make install, it gives below errors. Can you please help me to install this software
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_2.fastq: No such file or directory
Install python packages for the pipeline
Reading package lists...
Building dependency tree...
Reading state information...
python-biopython is already the newest version.
0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded.
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_2.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_2.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_2.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_2.fastq: No such file or directory
/home/sukesh/allbiotc2/pindel/Makefile:91: warning: overriding commands for target install' /home/sukesh/allbiotc2/breakdancer/Makefile:57: warning: ignoring old commands for target install'
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_2.fastq: No such file or directory
/home/sukesh/allbiotc2/clever/Makefile:62: warning: overriding commands for target install' /home/sukesh/allbiotc2/pindel/Makefile:91: warning: ignoring old commands for target install'
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_2.fastq: No such file or directory
Reading package lists...
Building dependency tree...
Reading state information...
libboost-all-dev is already the newest version.
0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded.
sudo: pip: command not found
make[1]: *** [install] Error 1
make: *** [install] Error 2
Thanks
Sukesh
The text was updated successfully, but these errors were encountered:
Dear Sir,
i downloaded the allbiotc2 using git. When i try with make install, it gives below errors. Can you please help me to install this software
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_2.fastq: No such file or directory
Install python packages for the pipeline
Reading package lists...
Building dependency tree...
Reading state information...
python-biopython is already the newest version.
0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded.
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_2.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_2.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_2.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_2.fastq: No such file or directory
/home/sukesh/allbiotc2/pindel/Makefile:91: warning: overriding commands for target
install' /home/sukesh/allbiotc2/breakdancer/Makefile:57: warning: ignoring old commands for target
install'ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_2.fastq: No such file or directory
/home/sukesh/allbiotc2/clever/Makefile:62: warning: overriding commands for target
install' /home/sukesh/allbiotc2/pindel/Makefile:91: warning: ignoring old commands for target
install'ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_2.fastq: No such file or directory
Reading package lists...
Building dependency tree...
Reading state information...
libboost-all-dev is already the newest version.
0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded.
sudo: pip: command not found
make[1]: *** [install] Error 1
make: *** [install] Error 2
Thanks
Sukesh
The text was updated successfully, but these errors were encountered: