From 07bf55fa5225793cfbfc40601d34b6f6bf03d893 Mon Sep 17 00:00:00 2001
From: mthang <m.thang@qfab.org>
Date: Wed, 7 Aug 2024 16:23:49 +1000
Subject: [PATCH] Update documentation.html

Add a note to 6. How Do I Upload Data and Create a Genome Track via the Apollo (browser) Interface?
---
 app/home/templates/home/resources/documentation.html | 11 +++++++++++
 1 file changed, 11 insertions(+)

diff --git a/app/home/templates/home/resources/documentation.html b/app/home/templates/home/resources/documentation.html
index 4e658f4..f8e119c 100644
--- a/app/home/templates/home/resources/documentation.html
+++ b/app/home/templates/home/resources/documentation.html
@@ -627,6 +627,17 @@ <h4>
     </a>
     .
   </p>
+  <p>
+    NOTE: The speed of loading reference genome will be very slow if the reference genome is created via Jbrowse interface. It might not be noticeable if the size of reference genome is small. 
+    Use prepare-refseqs.pl tool to create reference genome via the terminal if possible. This perl script splits the reference genome sequence into chunk (default: 20kb), and the loading speed of the reference genome/tracks in Jbrowse will improve greatly. This script is available on the Apollo instance.
+    See     
+    <a
+    href="https://jbrowse.org/docs/prepare-refseqs.pl.html"
+    >
+    here
+    </a>
+    for more details.
+  </p>
   <ol>
     <li>Log into your Apollo Instance</li>
     <li>