From 14b245088b331e790c8605fe76443f8ffe165758 Mon Sep 17 00:00:00 2001 From: Adibvafa Fallahpour <90617686+Adibvafa@users.noreply.github.com> Date: Tue, 24 Sep 2024 09:44:12 -0400 Subject: [PATCH] Update README.md --- README.md | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index e39da48..0ad2c0f 100644 --- a/README.md +++ b/README.md @@ -98,9 +98,12 @@ Set `deterministic=False` to generate variable sequences. Control the variabilit Using high temperatures might result in prediction of DNA sequences that do not translate to the input protein.
Generate multiple sequences by setting `num_sequences` to a value greater than 1. -
+

+ -**You can use the [inference template](https://github.com/Adibvafa/CodonTransformer/raw/main/src/CodonTransformer_inference_template.xlsx) for batch inference in [Google Colab](https://adibvafa.github.io/CodonTransformer/GoogleColab).** +### Batch Inference +**You can use the [inference template](https://github.com/Adibvafa/CodonTransformer/raw/main/src/CodonTransformer_inference_template.xlsx) to setup your dataset for batch inference in [Google Colab](https://adibvafa.github.io/CodonTransformer/GoogleColab).** +A sample dataset is provided under [\demo](https://github.com/Adibvafa/CodonTransformer/tree/main/demo) . A typical inference might take 1-3 seconds based on available compute.
@@ -119,7 +122,7 @@ cd CodonTransformer pip install -r requirements.txt ``` -The package requires `python>=3.9`. The requirements are [availabe here](requirements.txt). +The package requires `python>=3.9`, supports all major operating systems, and takes about 10-30 seconds depending on already installed requirements, [availabe here](requirements.txt).