From 14b245088b331e790c8605fe76443f8ffe165758 Mon Sep 17 00:00:00 2001
From: Adibvafa Fallahpour <90617686+Adibvafa@users.noreply.github.com>
Date: Tue, 24 Sep 2024 09:44:12 -0400
Subject: [PATCH] Update README.md
---
README.md | 9 ++++++---
1 file changed, 6 insertions(+), 3 deletions(-)
diff --git a/README.md b/README.md
index e39da48..0ad2c0f 100644
--- a/README.md
+++ b/README.md
@@ -98,9 +98,12 @@ Set `deterministic=False` to generate variable sequences. Control the variabilit
Using high temperatures might result in prediction of DNA sequences that do not translate to the input protein.
Generate multiple sequences by setting `num_sequences` to a value greater than 1.
-
+
+
-**You can use the [inference template](https://github.com/Adibvafa/CodonTransformer/raw/main/src/CodonTransformer_inference_template.xlsx) for batch inference in [Google Colab](https://adibvafa.github.io/CodonTransformer/GoogleColab).**
+### Batch Inference
+**You can use the [inference template](https://github.com/Adibvafa/CodonTransformer/raw/main/src/CodonTransformer_inference_template.xlsx) to setup your dataset for batch inference in [Google Colab](https://adibvafa.github.io/CodonTransformer/GoogleColab).**
+A sample dataset is provided under [\demo](https://github.com/Adibvafa/CodonTransformer/tree/main/demo) . A typical inference might take 1-3 seconds based on available compute.
@@ -119,7 +122,7 @@ cd CodonTransformer
pip install -r requirements.txt
```
-The package requires `python>=3.9`. The requirements are [availabe here](requirements.txt).
+The package requires `python>=3.9`, supports all major operating systems, and takes about 10-30 seconds depending on already installed requirements, [availabe here](requirements.txt).