All notable changes to this project will be documented in this file.
The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.
- Added a Dockerfile to the repository for containerization. Documentation on how to use the Dockerfile needs to be added to the README.
- Removed unnecessary imports from
setup.py
to clean up the codebase.
- Added CLI boolean handling to improve command-line interface usability.
- Added new pytests for CLI to ensure correct handling of booleans.
- Updated the README to reflect the new pytest additions.
- Updated CI/CD pipelines to accommodate pytest changes.
- Improved input_type value check mechanism to use .lower() before checking against values 'vcf' or 'matrix'.
- Updated dependency from PyPDF2 to pypdf to increase compatibility and resolve installation issues on bioconda.