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Error with Pandas 2.0.0 #133

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llecompte opened this issue Apr 13, 2023 · 3 comments · May be fixed by #192
Open

Error with Pandas 2.0.0 #133

llecompte opened this issue Apr 13, 2023 · 3 comments · May be fixed by #192
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@mdbarnesUCSD
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@llecompte
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Hello,

Thank you for developing SigProfiler tools.
I noticed an error with the new version of pandas (2.0.0) :
AttributeError: 'DataFrame' object has no attribute 'append'

I was able to run SigProfilerAssignment successfully using a version of pandas < 2.0.0.

Best regards,
Lolita
@grantn5
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grantn5 commented Apr 19, 2023

I have also come across this issue

@mdbarnesUCSD
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Hi @llecompte and @grantn5,

Thanks for reaching out. Please use pandas < 2.0.0 until the code can be updated to support pandas >= 2.0.0.

@mdbarnesUCSD mdbarnesUCSD added the enhancement New feature or request label Apr 19, 2023
@mdbarnesUCSD mdbarnesUCSD self-assigned this Apr 20, 2023
@mdbarnesUCSD mdbarnesUCSD added bug Something isn't working and removed enhancement New feature or request labels Apr 24, 2023
@hfl112
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hfl112 commented Oct 30, 2023

I also encounter the same error, you can downgrade pandas to 1.4.4. It works for me

soymintc added a commit to soymintc/SigProfilerMatrixGenerator that referenced this issue Aug 7, 2024
@soymintc
fix AlexandrovLab#133: update DataFrame append to concat
f76b8ab
@soymintc soymintc linked a pull request Aug 7, 2024 that will close this issue
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fix #133: update DataFrame append to concat soymintc/SigProfilerMatrixGenerator
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@llecompte @mdbarnesUCSD @hfl112 @grantn5