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TEM Config

This repository contains configuration files for the TEM acquisition system. It uses Pigeon Config (installable using pip install pigeon-config) to manage configurations for multiple systems.

Usage

  1. Compile the desired configuration using pigeon-config. For example, to compile the configuration for T3, run pigeon-config config/T3.
  2. Run docker compose.

Example

Install Pigeon Config:

pip install pigeon-config

Compile the configuration for creating a graph of the PyTEM state machine:

pigeon-config config/graph

Pull the necessary Docker containers from the compiled Docker compose file (must be connected to Allen Institute network or VPN):

sudo docker compose pull

Run the compiled Docker compose file:

sudo docker compose up

The graph should be saved to a file graph.png.