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apollo_sv-base.owl
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apollo_sv-base.owl
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<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/apollo_sv/apollo_sv-base.owl#"
xml:base="http://purl.obolibrary.org/obo/apollo_sv/apollo_sv-base.owl"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:go="http://purl.obolibrary.org/obo/go#"
xmlns:uo="http://purl.obolibrary.org/obo/uo#"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:www="http://www.referent-tracking.com/"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:core="http://purl.obolibrary.org/obo/uberon/core#"
xmlns:doap="http://usefulinc.com/ns/doap#"
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:pato="http://purl.obolibrary.org/obo/pato#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:skos="http://www.w3.org/2004/02/skos/core#"
xmlns:swrla="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#"
xmlns:terms="http://purl.org/dc/terms/"
xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:apollo_sv="http://purl.obolibrary.org/obo/apollo_sv.owl/"
xmlns:ncbitaxon="http://purl.obolibrary.org/obo/ncbitaxon#"
xmlns:ace_lexicon="http://attempto.ifi.uzh.ch/ace_lexicon#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/apollo_sv/apollo_sv-base.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/apollo_sv/releases/2024-08-15/apollo_sv-base.owl"/>
<dc:contributor>Amanda Hicks</dc:contributor>
<dc:contributor>John Levander</dc:contributor>
<dc:contributor>Josh Hanna</dc:contributor>
<dc:contributor>Matt Diller</dc:contributor>
<dc:contributor>Mike Wagner</dc:contributor>
<dc:contributor>Shawn T. Brown</dc:contributor>
<dc:contributor>William R. Hogan</dc:contributor>
<dc:creator>Mathias Brochhausen</dc:creator>
<dc:title xml:lang="en">Apollo Structured Vocabulary (Apollo-SV)</dc:title>
<dc:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
<terms:description xml:lang="en">An OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation.</terms:description>
<terms:license>https://creativecommons.org/licenses/by/4.0/</terms:license>
<www:RTS_00000001>C87985BA-6A8A-483A-A6B6-63975101F672</www:RTS_00000001>
<www:RTS_00000002>082D5D78-D916-457E-B4FD-365F86F45B30</www:RTS_00000002>
<rdfs:comment xml:lang="en">When citing Apollo-SV, use the permanent URL of the ontology: http://purl.obolibrary.org/obo/apollo_sv.owl. When referencing a specific component of the Apollo-SV such as a class, object property, annotation property, or individual, use the component's Uniform Resource Identifier (URI).</rdfs:comment>
<owl:versionInfo>2023-01-10</owl:versionInfo>
<owl:versionInfo>2024-08-15</owl:versionInfo>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000319 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000319">
<obo:IAO_0000118 xml:lang="en">National Library of Medicine Identifier
</obo:IAO_0000118>
<rdfs:comment xml:lang="en">This identifier is the one that the National Library of Medicine uses to identify journals uniquely in PubMed.</rdfs:comment>
<rdfs:label xml:lang="en">NLM ID</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000320 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000320">
<obo:IAO_0000111 xml:lang="en">linking ISSN</obo:IAO_0000111>
<obo:IAO_0000118 xml:lang="en">International Standard Serial Number, Linking</obo:IAO_0000118>
<rdfs:comment xml:lang="en">The linking ISSN is a single number assigned to all formats of a journal. The online and print versions of a journal, for example, are typically different. The linking ISSN refers to the journal regardless of format.</rdfs:comment>
<rdfs:label xml:lang="en">ISSN Linking</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000321 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000321">
<obo:IAO_0000118 xml:lang="en">Iso Abbr</obo:IAO_0000118>
<rdfs:comment xml:lang="en">ISO Abbreviations are constructed at NLM to assist NCBI in linking from GenBank to PubMed.</rdfs:comment>
<rdfs:label xml:lang="en">ISO Title Abbreviation</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000324 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000324">
<rdfs:comment xml:lang="en">The abbreviated journal title assigned by the National Library of Medicine. Typically, it's the ISO title abbreviation without periods.</rdfs:comment>
<rdfs:label xml:lang="en">NLM Title Abbreviation</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000325 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000325">
<obo:IAO_0000115 xml:lang="en">The date on which a URI annotated with this property was created.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:comment xml:lang="en">This is the date that you created the URI that represents something, NOT the date that the thing referenced by the URI was created.
For example, if you create a URI on 2014-09-24 to represent a book published on 1982-10-17, then this annotation property should have the value 2014-09-24.
In other words, this annotation refers to the representation, not the represented thing.
For the 1982-10-17 date, we suggest the dc:created annotation.</rdfs:comment>
<rdfs:label xml:lang="en">URI creation date</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000329 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000329">
<obo:IAO_0000111 xml:lang="en">author list</obo:IAO_0000111>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:comment xml:lang="en">an annotation property for capturing the list of authors on the publication or other document to which the entity to which the annotation is attached refers. That is, this annotation should be attached only to individuals that represent information content entities, and its values must denote the people that authored the ICE.</rdfs:comment>
<rdfs:label xml:lang="en">author list <annotation></rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000488 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000488">
<obo:IAO_0000111 xml:lang="en">source code version control repository URL</obo:IAO_0000111>
<obo:IAO_0000117 xml:lang="en">WIlliam R. Hogan</obo:IAO_0000117>
<rdfs:comment xml:lang="en">This annotation is intended for annotating instances of software application, software module, ontology (artifact), etc. with a uniform resource locator that points to the source code version control repository where they are managed. Note that for OWL individuals that reference a particular version of the software or ontology, this URL should point to the place in the repository where that version is located, rather than the general main page of the repository.</rdfs:comment>
<rdfs:label xml:lang="en">source code repository URL</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000523 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000523">
<obo:IAO_0000111 xml:lang="en">human readable synopsis</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A comment that summarizes the most relevant or salient features and history of the entity for human readers.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:label xml:lang="en">human readable synopsis</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2000/01/rdf-schema#comment"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000111 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000111"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000112 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000112"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000117 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000117"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000118 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000118"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000119 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000232 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000232"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000600 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000600"/>
<!-- http://purl.obolibrary.org/obo/IAO_0100001 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0100001"/>
<!-- http://purl.obolibrary.org/obo/apollo_sv.owl/APOLLO_SV_0000040 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/apollo_sv.owl/APOLLO_SV_0000040"/>
<!-- http://purl.org/dc/elements/1.1/contributor -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/contributor"/>
<!-- http://purl.org/dc/elements/1.1/creator -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/creator"/>
<!-- http://purl.org/dc/elements/1.1/date -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/date"/>
<!-- http://purl.org/dc/elements/1.1/source -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/source"/>
<!-- http://purl.org/dc/elements/1.1/title -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/title"/>
<!-- http://purl.org/dc/elements/1.1/type -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/type"/>
<!-- http://purl.org/dc/terms/description -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/description"/>
<!-- http://purl.org/dc/terms/license -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/license"/>
<!-- http://www.referent-tracking.com/RTS_00000001 -->
<owl:AnnotationProperty rdf:about="http://www.referent-tracking.com/RTS_00000001"/>
<!-- http://www.referent-tracking.com/RTS_00000002 -->
<owl:AnnotationProperty rdf:about="http://www.referent-tracking.com/RTS_00000002"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000004 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000004">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty"/>
<rdfs:label xml:lang="en">basis of</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000028 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000028">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty"/>
<rdfs:comment xml:lang="en">p is based on e, if p is a purely intentional entity, e is an entity and p assumption/simulation that e exists regardless of the truth of this assumption. </rdfs:comment>
<rdfs:label xml:lang="en">obsolete is based on</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000037 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000037">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#AsymmetricProperty"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#IrreflexiveProperty"/>
<rdfs:domain>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000245"/>
</owl:unionOf>
</owl:Class>
</rdfs:domain>
<rdfs:range>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000004"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000015"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000030"/>
</owl:unionOf>
</owl:Class>
</rdfs:range>
<obo:IAO_0000115 xml:lang="en">a commissions b, iff a does not participate in the creation or execution of b and participates in a legal agreement that c participates on the creation or execution of b and c getting something in exchange for that participation.</obo:IAO_0000115>
<obo:IAO_0000600 xml:lang="en">A relation between two entities where the first entity formally requests a third party to create or execute the second entity.</obo:IAO_0000600>
<apollo_sv:APOLLO_SV_0000040>commissions</apollo_sv:APOLLO_SV_0000040>
<rdfs:label xml:lang="en">commissions</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000057 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000057">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#AsymmetricProperty"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#IrreflexiveProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000001"/>
<obo:IAO_0000115 xml:lang="en">A relation between to particulars such that aRb where b can be any kind of entity while the second is a universal. b instantiates a at some times. </obo:IAO_0000115>
<rdfs:comment>Barry Smith, Waclaw Kusnierczyk, Daniel Schober, Werner Ceusters, “Towards a Reference Terminology for Ontology Research and Development in the Biomedical Domain”, O. Bodenreider, ed., Proceedings of KR-MED, 2006, 57-66. Also available online at: http://ceur-ws.org/Vol-222.</rdfs:comment>
<rdfs:label xml:lang="en">instantiates</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000067 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000067">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#AsymmetricProperty"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#IrreflexiveProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000070"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000001"/>
<obo:IAO_0000115 xml:lang="en">a simulates b, iff a is a purely intentional entity that is representing a fictional individual or fact b and a participates in a simulating.</obo:IAO_0000115>
<rdfs:label xml:lang="en">simulates</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000116 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000116">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty"/>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<rdfs:label xml:lang="en">causally_precedes</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000177 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000177">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty"/>
<rdfs:label xml:lang="en">obsoleted_administrated by</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000543 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000543">
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<obo:IAO_0000111 xml:lang="en">has basis in quality</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">(Q is_a Quality ⋀ D is_a Disposition ⋀ Q base of D) ® ∀q (q instance_of Q ® b (q inheres_in b ⋀ d (d instance_of D ⋀ d inheres_in b)))</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">Representing dispositions
Johannes Röhl and Ludger Jansen
Journal of Biomedical Semantics 2011 2(Suppl 4):S4
DOI: 10.1186/2041-1480-2-S4-S4</obo:IAO_0000119>
<rdfs:comment xml:lang="en">The relationship between a disposition and the quality that confers the disposition on the material entity in which they both inhere.
For example, the disposition of a piece of glass to bend light and the lattice structure of the glass (quality) that results in the bending of the light.</rdfs:comment>
<rdfs:label xml:lang="en">has basis in</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000050 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000051 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000051"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000054 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000054"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000055 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000055"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000066 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000066"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000067 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000067"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000108 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000108"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000111 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000111"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000113 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000113"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000117 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000117"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000118 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000118"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000137 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000137"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000139 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000139"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000156 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000156"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000136 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000136"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000219 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000219"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000293 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000293"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000299 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000299"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000312 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000312"/>
<!-- http://purl.obolibrary.org/obo/OBI_0001938 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0001938"/>
<!-- http://purl.obolibrary.org/obo/OMRSE_00000070 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000070"/>
<!-- http://purl.obolibrary.org/obo/OMRSE_00000071 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000071"/>
<!-- http://purl.obolibrary.org/obo/RO_0000052 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000052"/>
<!-- http://purl.obolibrary.org/obo/RO_0000053 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000053"/>
<!-- http://purl.obolibrary.org/obo/RO_0000056 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000056"/>
<!-- http://purl.obolibrary.org/obo/RO_0000057 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000057"/>
<!-- http://purl.obolibrary.org/obo/RO_0000059 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000059"/>
<!-- http://purl.obolibrary.org/obo/RO_0000091 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000091"/>
<!-- http://purl.obolibrary.org/obo/RO_0001015 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001015"/>
<!-- http://purl.obolibrary.org/obo/RO_0001025 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001025"/>
<!-- http://purl.obolibrary.org/obo/RO_0002087 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002087"/>
<!-- http://purl.obolibrary.org/obo/RO_0002090 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002090"/>
<!-- http://purl.obolibrary.org/obo/RO_0002163 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002163"/>
<!-- http://purl.obolibrary.org/obo/RO_0002212 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002212"/>
<!-- http://purl.obolibrary.org/obo/RO_0002218 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002218"/>
<!-- http://purl.obolibrary.org/obo/RO_0002233 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002233"/>
<!-- http://purl.obolibrary.org/obo/RO_0002234 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002234"/>
<!-- http://purl.obolibrary.org/obo/RO_0002350 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002350"/>
<!-- http://purl.obolibrary.org/obo/RO_0002351 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002351"/>
<!-- http://purl.obolibrary.org/obo/RO_0002404 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002404"/>
<!-- http://purl.obolibrary.org/obo/RO_0002411 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002411"/>
<!-- http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty -->
<owl:ObjectProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Data properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000102 -->
<owl:DatatypeProperty rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000102">
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000031"/>
<rdfs:label xml:lang="en">is expressed as</rdfs:label>
</owl:DatatypeProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000000">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000031"/>
<obo:IAO_0000115 xml:lang="en">A generically dependent continuant which derives its existence and its entire endowment from an intending experience of consciousness (an "act") that is laden with determinate, uniformily structured content.</obo:IAO_0000115>
<obo:IAO_0000600 xml:lang="en">A generically dependent continuant which derives its existence and its entire endowment from an intending experience of consciousness (an "act") that is laden with determinate, uniformily structured content.</obo:IAO_0000600>
<dc:source>Ingarden, R. (1964) Der Streit um die Existenz der Welt I. Existentalontologie. Max Niemeyer, Tübingen.</dc:source>
<dc:source>Ingarden, R. (1965a) Das literarische Kunstwerk. 3. Auflage. Max Niemeyer, Tübingen.</dc:source>
<dc:source>Ingarden, R. (1965b) Der Streit um die Existenz der Welt II/1. Formalontologie 1. Teil. Max Niemeyer, Tübingen.</dc:source>
<dc:source>Johansson I. (2009) Proof of the existence of universals – and Roman Ingarden's Ontology. Metaphysica. International Journal for Ontology & Metaphysics. 10, 65-87</dc:source>
<dc:source>Thomasson AL. "Ingarden and the Ontology of Cultural Objects." In: Chrudziminski A (ed.): Existence, Culture, and Person. The Ontology of Roman Ingarden. Frankfurt: ontos, 2005, 115-136.</dc:source>
<rdfs:comment xml:lang="en">MB: Right now we represent 'purely intentional entities' as siblings to 'information content entities'. Given their nature I am not entirly sure that this is correct. It seems that both 'information content entity' and 'simulation' are subclass to 'purely intentional entity'.</rdfs:comment>
<rdfs:label xml:lang="en">purely intentional entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000174"/>
<obo:IAO_0000115 xml:lang="en">A disease transmission model whose concretization is realized as a simulation of infectious disease epidemic or infectious disease pandemic.</obo:IAO_0000115>
<obo:IAO_0000117>William Hogan and Michael Wagner</obo:IAO_0000117>
<obo:IAO_0000600 xml:lang="en">An algorithm the concretizations of which models the transmission of transmissible disease.</obo:IAO_0000600>
<rdfs:label xml:lang="en">epidemic model</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000002 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000002">
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000043"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000115"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000137"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000234"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">The average number of transmissions of an infectious agent from an infectious organism to a susceptible organism within a completely susceptible population.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000600 xml:lang="en">The number of organisms that each infected organism infects in a completely susceptible population during its infectious period.</obo:IAO_0000600>
<apollo_sv:APOLLO_SV_0000040>basicReproductionNumbers</apollo_sv:APOLLO_SV_0000040>
<rdfs:comment xml:lang="en">MB: Here we run into the well know DL problem that we cannot specify that the infectious agent that is transmitted is of the same type that the infectious agent the population is susceptible to.</rdfs:comment>
<rdfs:label xml:lang="en">basic reproduction number</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000003 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000003">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000152"/>
<obo:IAO_0000115 xml:lang="en">A population survey that assesses the level of immunity against a particular pathogen in a specified population.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000600 xml:lang="en">A population survey that assesses the level of immunity against a particular pathogen in a specified population.</obo:IAO_0000600>
<rdfs:comment xml:lang="en">Comment from Mike (to do!):
I checked because an infection and immunity census would involve two different census methods. One would be some kind of disease surveillance that counts infections. The other is some kind of immunity census process based on seroprevalence studies or vaccination registries.</rdfs:comment>
<rdfs:label xml:lang="en">population immunity survey</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000005 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000005">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<obo:IAO_0000115 xml:lang="en">a planned process that (1) has at least one process part that has as participants representations of participants (in place of those participants) of processes of type X, and where all such process parts substitute for parts of processes of type X, and (2) is carried out for the purpose of planning for processes of type X, learning more about processes of type X, or teaching about processes of type X.</obo:IAO_0000115>
<obo:IAO_0000600 xml:lang="en">A process that replaces the essential participants of another type of process with representations of those participants.</obo:IAO_0000600>
<apollo_sv:APOLLO_SV_0000040>simulating of process of type X</apollo_sv:APOLLO_SV_0000040>
<rdfs:comment xml:lang="en">For example, in a simulated volcano eruption, representations of lava, lava tubes, vents, etc. take the place of actual lava, lava tubes, vents, etc.
Even in the case of a simulated disaster scenario where actual ambulances, fire trucks, and people participate, representations of catastrophic events and injuries, etc. take the place of real ones.</rdfs:comment>
<rdfs:label xml:lang="en">simulating of process of type X</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000006 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000006">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0020000"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000219"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000245"/>
</owl:unionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000037"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0020000"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000219"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000245"/>
</owl:unionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000037"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">An identifier that refers to the legal person that commissions a simulation process.</obo:IAO_0000115>
<obo:IAO_0000600 xml:lang="en">An identifier that refers to the person or organization who is requesting one or more executions of the simulator software.</obo:IAO_0000600>
<rdfs:comment xml:lang="en">Class was originally created to correspond with a complex type from Apollo XSD v3.1.0.</rdfs:comment>
<rdfs:label xml:lang="en">simulation requester identifier</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000007 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000007">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000594"/>
<obo:IAO_0000115 xml:lang="en">A software application that provides a model of a real phenomenon based on a set of mathematical formulas.</obo:IAO_0000115>
<obo:IAO_0000119>http://en.wikipedia.org/wiki/Simulation_software</obo:IAO_0000119>
<obo:IAO_0000600 xml:lang="en">A software application that provides a model of a real phenomenon based on a set of mathematical formulas.</obo:IAO_0000600>
<apollo_sv:APOLLO_SV_0000040>simulator</apollo_sv:APOLLO_SV_0000040>
<rdfs:label xml:lang="en">simulation software application</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000008 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000008">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000011"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000010"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000096"/>
</owl:unionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000010"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000096"/>
</owl:unionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A planned process that has specified output a software product and that involves the creation of source code.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000119>http://en.wikipedia.org/wiki/Software_development</obo:IAO_0000119>
<obo:IAO_0000600 xml:lang="en">A planned process resulting in a software product involving the creation of source code.</obo:IAO_0000600>
<rdfs:label xml:lang="en">software development</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000009 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000009">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0020000"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000219"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000245"/>
</owl:unionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000056"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000008"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000007"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000105"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000219"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000245"/>
</owl:unionOf>
</owl:Class>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000056"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000008"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000007"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">An identifier that refers to the legal person that creates and maintains a simulator.</obo:IAO_0000115>
<obo:IAO_0000600 xml:lang="en">An identifier that refers to the person or organization who is responsible for the simulator. It is intended to uniquely identify a person or organization. That said, we do not plan to control the namespace for simulator developer at this point in development. We will add our ideas about alternatives at a future date.</obo:IAO_0000600>
<rdfs:label xml:lang="en">simulator developer identifier</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000010 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000010">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0020000"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000219"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000007"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000109"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000054"/>
</owl:Restriction>