diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json new file mode 100644 index 0000000..56491e1 --- /dev/null +++ b/.devcontainer/devcontainer.json @@ -0,0 +1,36 @@ +// For format details, see https://aka.ms/devcontainer.json. For config options, see the +// README at: https://github.com/devcontainers/templates/tree/main/src/python +{ + "name": "Python 3", + // Or use a Dockerfile or Docker Compose file. More info: https://containers.dev/guide/dockerfile + "image": "mcr.microsoft.com/devcontainers/python:3.10-bullseye", + + // Features to add to the dev container. More info: https://containers.dev/features. + "features": { + "ghcr.io/devcontainers-contrib/features/poetry:2": {}, + "ghcr.io/devcontainers/features/node:1": {} + }, + + // Use 'forwardPorts' to make a list of ports inside the container available locally. + // "forwardPorts": [], + + // Use 'postCreateCommand' to run commands after the container is created. + "postCreateCommand": "poetry install && poetry run playwright install --with-deps", + + // Configure tool-specific properties. + "customizations": { + "vscode": { + "extensions": [ + "ms-python.python", + "ms-toolsai.jupyter", + "charliermarsh.ruff", + "streetsidesoftware.code-spell-checker", + "tamasfe.even-better-toml", + "ryanluker.vscode-coverage-gutters" + ] + } + } + + // Uncomment to connect as root instead. More info: https://aka.ms/dev-containers-non-root. + // "remoteUser": "root" +} diff --git a/.github/workflows/main.yaml b/.github/workflows/main.yaml new file mode 100644 index 0000000..20575a1 --- /dev/null +++ b/.github/workflows/main.yaml @@ -0,0 +1,18 @@ +name: 'Validate Tapyr App' +on: + pull_request: + push: + branches: + - main + +jobs: + test: + runs-on: ubuntu-latest + steps: + - name: Checkout (GitHub) + uses: actions/checkout@v4 + + - name: Run quality checks + uses: devcontainers/ci@v0.3 + with: + runCmd: ./quality_checks.sh diff --git a/.github/workflows/pre-commit.yml b/.github/workflows/pre-commit.yml new file mode 100644 index 0000000..65947d3 --- /dev/null +++ b/.github/workflows/pre-commit.yml @@ -0,0 +1,14 @@ +name: pre-commit + +on: + pull_request: + push: + branches: [main] + +jobs: + pre-commit: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + - uses: actions/setup-python@v5 + - uses: pre-commit/action@v3.0.1 diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..dccd03a --- /dev/null +++ b/.gitignore @@ -0,0 +1,15 @@ +__pycache__ +.ipynb_checkpoints +.DS_Store + +# Code coverage +lcov.info +.coverage + +# Results of playwright tests with tracing +test-results/ + +# Files from playwright installed with npm +node_modules +package-lock.json +package.json diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml new file mode 100644 index 0000000..b967a38 --- /dev/null +++ b/.pre-commit-config.yaml @@ -0,0 +1,16 @@ +repos: +- repo: https://github.com/pre-commit/pre-commit-hooks + rev: v4.5.0 + hooks: + - id: trailing-whitespace + - id: end-of-file-fixer + - id: check-yaml + - id: check-added-large-files + exclude: ^data/records\.parquet$ + +- repo: https://github.com/astral-sh/ruff-pre-commit + rev: v0.4.1 + hooks: + - id: ruff + args: [ --fix ] + - id: ruff-format diff --git a/.vscode/settings.json b/.vscode/settings.json new file mode 100644 index 0000000..a3a1838 --- /dev/null +++ b/.vscode/settings.json @@ -0,0 +1,7 @@ +{ + "python.testing.pytestArgs": [ + "tests" + ], + "python.testing.unittestEnabled": false, + "python.testing.pytestEnabled": true +} diff --git a/README.md b/README.md new file mode 100644 index 0000000..bf52c41 --- /dev/null +++ b/README.md @@ -0,0 +1,94 @@ +# Tapyr - Shiny for Python Application TemplateTapyr logo + +> Create and deploy enterprise-ready PyShiny dashboards with ease. + +# WIP: Not the final version of README. + +## Introduction + +Tapyr is designed for data scientists and developers seeking a seamless transition from development to deployment, this template uses `poetry` for dependency management and `pytest`/`playwright` for comprehensive app validation/testing/quality assurance. +Ideal for projects aiming for high-quality code and efficient deployment on Posit Connect. + +## Docs + +For comprehensive documentation, please visit our [documentation TODO](TODO). + +## Getting Started + +Check out our get started with `tapyr` [blog post TODO](TOOD). + +### Using Devcontainer + +To ensure a consistent development experience across all environments, we recommend using the [devcontainer](https://code.visualstudio.com/docs/remote/containers) configuration with Visual Studio Code or DevPod for container-based development. + +1. **Start the Devcontainer**: Open the project in VS Code and select "Reopen in Container" when prompted, or use the Command Palette (`Ctrl+Shift+P`) and choose "Remote-Containers: Reopen in Container". Alternatively, use [DevPod](https://devpod.sh/) following their instructions. +2. **Activate the virtual environment**: + ```sh + poetry shell + ``` +3. **Run the application**: + ```sh + shiny run app.py --reload + ``` +4. **Execute tests**: + ```sh + poetry run pytest + ``` + +*Note*: The Devcontainer might limit some `playwright` features, such as `codegen`. For full functionality, consider a local setup. + +### Setting Up Locally with Poetry + +For developers preferring a local setup without Devcontainer: + +1. **Install pipx**: Ensure pipx is installed for managing isolated CLI apps. +2. **Install Poetry**: + ```sh + pipx install poetry + ``` +3. **Clone the repository** and navigate to it. +4. **Install dependencies**: + ```sh + poetry install + playwright install + ``` + +*Attention*: Follow any additional steps prompted by `playwright install`. + +### Deployment on Posit Connect + +Deploy your application to Posit Connect by: + +1. **Exporting your API Key**: + ```sh + export CONNECT_API_KEY="your_api_key_here" + ``` +2. **Configuring Posit Connect**: + ```sh + rsconnect add \ + --api-key $CONNECT_API_KEY \ + --server \ + --name + ``` +3. **Deploying**: + ```sh + rsconnect deploy shiny -t "Tapyr App" . + ``` + +Replace placeholders with your server URL, server name, and API key. Verify the deployment on Posit Connect for successful upload. + +--- + +Developed with :heart: at [Appsilon](https://appsilon.com). +Get in touch: . + +Want to stay up to date with Tapyr and other packages? Join 4,2k explorers and get the [📧 Shiny Weekly Newsletter](https://go.appsilon.com/shiny-weekly?utm_source=community&utm_medium=github&utm_content=tapyr) into your mailbox and check our [Slack community](https://go.appsilon.com/shiny4allcommunity). + +Explore the [Rhinoverse](https://rhinoverse.dev) - a family of R packages built around [Rhino](https://appsilon.github.io/rhino/)! + +Appsilon is a +[**Posit (formerly RStudio) Full Service Certified Partner**](https://www.rstudio.com/certified-partners/). + + + We are hiring! + diff --git a/app.py b/app.py new file mode 100644 index 0000000..301fab8 --- /dev/null +++ b/app.py @@ -0,0 +1,19 @@ +import sys +from pathlib import Path + +from loguru import logger +from shiny import App, ui + +from tapyr_template.settings import AppSettings +from tapyr_template.view.root import get_dashboard_ui, server + +# Setup settings and logger +app_settings = AppSettings() +logger.remove() +logger.add(sys.stderr, level=app_settings.log_level) + +# Combine clean shiny UI with CSS and external resources +ui_with_css = ui.TagList(ui.tags.link(href="style.css", rel="stylesheet"), get_dashboard_ui()) + +app_dir = Path(__file__).parent +app = App(ui_with_css, server, static_assets=app_dir / "www") diff --git a/notebooks/01_experiments.ipynb b/notebooks/01_experiments.ipynb new file mode 100644 index 0000000..fbabc90 --- /dev/null +++ b/notebooks/01_experiments.ipynb @@ -0,0 +1,69 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "%load_ext autoreload\n", + "%autoreload 2" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "from tapyr_template.logic.utils import divide" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "divide(10, 2)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + 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index 0000000..edec3f2 --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,45 @@ +[tool.poetry] +name = "tapyr_template" +version = "0.1.0" +description = "" +authors = ["Appsilon.com "] +readme = "README.md" +packages = [{include = "tapyr_template"}] + +[tool.coverage.run] +source = ["tapyr_template"] + +[tool.poetry.dependencies] +python = "^3.10" +shiny = "^0.9.0" +rich = "^13.7.1" +loguru = "^0.7.2" +pydantic-settings = "^2.2.1" +python-dotenv = "^1.0.1" + +[tool.poetry.group.dev.dependencies] +icecream = "^2.1.3" # For debugging, print() on steroids +ipykernel = "^6.29.4" # For running Jupyter notebooks in VS Code +ipywidgets = "^8.1.2" # For running Jupyter notebooks in VS Code +pre-commit = "^3.7.0" +ruff = "^0.4.1" +rsconnect-python = "^1.23.0" +pytest = "^8.1.1" +playwright = "^1.43.0" +pytest-playwright = "^0.4.4" +requests = "^2.31.0" +tenacity = "^8.2.3" +pytest-watch = "^4.2.0" +pytest-cov = "^5.0.0" +pyright = "^1.1.360" + +[build-system] +requires = ["poetry-core"] +build-backend = "poetry.core.masonry.api" + +[tool.pytest.ini_options] +addopts = "--cov . --cov-report=lcov:lcov.info --cov-report=term" +filterwarnings = [ + # This warning is caused by the `jupyter_client` package and is not relevant to us + "ignore:Jupyter is migrating its paths to use standard platformdirs.*:DeprecationWarning:jupyter_client.connect" +] diff --git a/quality_checks.sh b/quality_checks.sh new file mode 100755 index 0000000..a564e51 --- /dev/null +++ b/quality_checks.sh @@ -0,0 +1,11 @@ +#!/bin/bash +# This script is for running quality checks in GitHub Actions. +# It runs tests, and type checks with pyright. + +set -e # Exit immediately if a command exits with a non-zero status. + +echo "Running pytest for unit tests..." +poetry run pytest + +echo "Running pyright for type checking..." +poetry run pyright tapyr_template diff --git a/renovate.json b/renovate.json new file mode 100644 index 0000000..5db72dd --- /dev/null +++ b/renovate.json @@ -0,0 +1,6 @@ +{ + "$schema": "https://docs.renovatebot.com/renovate-schema.json", + "extends": [ + "config:recommended" + ] +} diff --git a/requirements.txt b/requirements.txt new file mode 100644 index 0000000..b8fd5b1 --- /dev/null +++ b/requirements.txt @@ -0,0 +1,2 @@ +# This single dot is required by Posit Connect to deploy the app +. diff --git a/ruff.toml b/ruff.toml new file mode 100644 index 0000000..56b3c49 --- /dev/null +++ b/ruff.toml @@ -0,0 +1,33 @@ +target-version = "py310" +line-length = 120 + +[lint] +select = [ + "I", # isort: Import sorting + "S", # flake8-bandit: Security checks from Bandit + "B", # flake8-bugbear: Finds likely bugs and design problems in your program + "PT", # flake8-pytest-style: PyTest style checks + "DTZ", # flake8-datetimez: Checks for correct datetime usage + "ISC", # flake8-implicit-str-concat: Checks for implicitly concatenated strings in a list + "RET", # flake8-return: Checks return values + "PTH", # flake8-use-pathlib: Encourages the use of pathlib over os.path + "N", # pep8-naming: Naming convention checks + "E", # pycodestyle errors: Checks against PEP 8 errors + "F", # Pyflakes: Checks for various errors + "UP", # pyupgrade: Checks for older syntax versions and suggests upgrades + "NPY", # NumPy-specific rules + "PD", # pandas-vet: Checks for pandas best practices and potential errors + "RUF", # Ruff-specific rules: Rules specific to Ruff +] +unfixable = [ + "B", # Marking flake8-bugbear as unfixable, indicating that these warnings should be manually reviewed +] +ignore = [ + "ISC001" # ruff recommends disabling the rule +] + +[lint.per-file-ignores] +"tests/*" = [ + "S101", # Security check: assert statements + "S311", # Security check: random +] diff --git a/tapyr_template/__init__.py b/tapyr_template/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tapyr_template/logic/__init__.py b/tapyr_template/logic/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tapyr_template/logic/utils.py b/tapyr_template/logic/utils.py new file mode 100644 index 0000000..ed18ffd --- /dev/null +++ b/tapyr_template/logic/utils.py @@ -0,0 +1,11 @@ +from loguru import logger + + +@logger.catch(reraise=True) +def divide(x: int, y: int) -> float: + """ + The purpose of this function is to illustrate where to put functions in the template. + Additionally it shows how to use loguru to catch exceptions and log them. + """ + + return x / y diff --git a/tapyr_template/settings.py b/tapyr_template/settings.py new file mode 100644 index 0000000..f64db12 --- /dev/null +++ b/tapyr_template/settings.py @@ -0,0 +1,5 @@ +from pydantic_settings import BaseSettings + + +class AppSettings(BaseSettings): + log_level: str = "INFO" diff --git a/tapyr_template/view/__init__.py b/tapyr_template/view/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tapyr_template/view/root/__init__.py b/tapyr_template/view/root/__init__.py new file mode 100644 index 0000000..2a99138 --- /dev/null +++ b/tapyr_template/view/root/__init__.py @@ -0,0 +1,2 @@ +from .ui import get_dashboard_ui # noqa F401 +from .server import server # noqa F401 diff --git a/tapyr_template/view/root/server.py b/tapyr_template/view/root/server.py new file mode 100644 index 0000000..8507a7b --- /dev/null +++ b/tapyr_template/view/root/server.py @@ -0,0 +1,5 @@ +from shiny import Inputs, Outputs, Session + + +def server(input: Inputs, output: Outputs, session: Session): + pass diff --git a/tapyr_template/view/root/ui.py b/tapyr_template/view/root/ui.py new file mode 100644 index 0000000..42f1bad --- /dev/null +++ b/tapyr_template/view/root/ui.py @@ -0,0 +1,31 @@ +from shiny import ui + + +def get_dashboard_ui() -> ui.Tag: + return ui.page_fluid( + # This example shows how custom PyShiny apps can be! + ui.card( + ui.row( + ui.column( + 7, + ui.h1( + ui.span("Tapyr", style="color: #486590; font-size: 3rem;"), + " | PyShiny Template by ", + ui.span("Appsilon", style="color: #007bff; font-size: 3rem;"), + ), + ui.a( + "Start with the docs!", + href="https://tapyr.appsilon.com/", + class_="docs-link", + data_testid="docs-link", + ), + style="padding: 2rem;", + ), + ui.column( + 5, + ui.img(src="images/tapyr.png", style="width: 300px; display: block; margin: 0 auto;"), + ), + ), + ), + style="display: flex; justify-content: center; align-items: center; height: 100vh;", + ) diff --git a/tests/conftest.py b/tests/conftest.py new file mode 100644 index 0000000..6a24057 --- /dev/null +++ b/tests/conftest.py @@ -0,0 +1,24 @@ +from collections.abc import Generator + +import pytest +from loguru import logger + + +class LogSink: + """Custom log sink to capture log messages from loguru.""" + + def __init__(self): + self.messages = [] + + def __call__(self, message): + self.messages.append(message) + + +@pytest.fixture() +def loguru_sink() -> Generator[LogSink, None, None]: + """Fixture to capture log messages from loguru.""" + sink = LogSink() + logger.remove() + logger.add(sink) + yield sink + logger.remove() diff --git a/tests/helpers/logging_helpers.py b/tests/helpers/logging_helpers.py new file mode 100644 index 0000000..a6d6ff0 --- /dev/null +++ b/tests/helpers/logging_helpers.py @@ -0,0 +1,2 @@ +def log_contain_message(log_sink, message): + return any(message in record for record in log_sink.messages) diff --git a/tests/playwirght/conftest.py b/tests/playwirght/conftest.py new file mode 100644 index 0000000..e96123e --- /dev/null +++ b/tests/playwirght/conftest.py @@ -0,0 +1,33 @@ +import threading + +import pytest +import requests +from tenacity import retry, stop_after_delay, wait_fixed +from uvicorn import Config, Server + +APP_HOST = "127.0.0.1" +APP_PORT = 8989 +APP_URL = f"http://{APP_HOST}:{APP_PORT}" + + +@retry(wait=wait_fixed(0.5), stop=stop_after_delay(10)) +def wait_for_server_to_start(url): + response = requests.get(url) # noqa: S113 + response.raise_for_status() # Will raise an exception if the request is unsuccessful, i.e. server is not ready + + +def run_server(): + config = Config(app="app:app", host=APP_HOST, port=APP_PORT, log_level="info") + server = Server(config) + server.run() + + +@pytest.fixture(scope="session", autouse=True) +def _shiny_server(): + # Start the server in a background thread + thread = threading.Thread(target=run_server, daemon=True) + thread.start() + + wait_for_server_to_start(APP_URL) + + return diff --git a/tests/playwirght/test_ui.py b/tests/playwirght/test_ui.py new file mode 100644 index 0000000..94ca61d --- /dev/null +++ b/tests/playwirght/test_ui.py @@ -0,0 +1,7 @@ +from conftest import APP_URL +from playwright.sync_api import Page, expect + + +def test_footer(page: Page): + page.goto(APP_URL) + expect(page.get_by_test_id("docs-link")).to_contain_text("Start with the docs!") diff --git a/tests/pytest/test_utils.py b/tests/pytest/test_utils.py new file mode 100644 index 0000000..9de4393 --- /dev/null +++ b/tests/pytest/test_utils.py @@ -0,0 +1,26 @@ +import pytest + +from tapyr_template.logic.utils import divide +from tests.helpers.logging_helpers import log_contain_message + + +def test_divide(): + # Given + x = 2 + y = 2 + expected = 1.0 + # When + result = divide(x, y) + # Then + assert result == expected + + +def test_divide_by_zero(loguru_sink): + # Given + x = 2 + y = 0 + # When + with pytest.raises(ZeroDivisionError): + divide(x, y) + # Then + assert log_contain_message(loguru_sink, "ZeroDivisionError: division by zero") diff --git a/www/favicon.ico b/www/favicon.ico new file mode 100644 index 0000000..9f938b2 Binary files /dev/null and b/www/favicon.ico differ diff --git a/www/images/tapyr.png b/www/images/tapyr.png new file mode 100644 index 0000000..919e864 Binary files /dev/null and b/www/images/tapyr.png differ diff --git a/www/style.css b/www/style.css new file mode 100644 index 0000000..109ad17 --- /dev/null +++ b/www/style.css @@ -0,0 +1,25 @@ +@import url('https://fonts.googleapis.com/css2?family=Roboto+Mono:ital,wght@0,400;0,500;0,600;1,400;1,500;1,600&display=swap'); +@import url('https://fonts.googleapis.com/css2?family=Maven+Pro:wght@300;400;500;600;700&display=swap'); +@import url('https://fonts.googleapis.com/css2?family=Roboto:ital,wght@0,400;0,500;1,400;1,500&display=swap'); + +body { + font-family: 'Maven Pro', sans-serif; + background-color: #f0f6ff; + color: #333333; +} + +h1 { + font-size: 2rem; + margin-top: 1rem; + font-weight: 600; +} + +.docs-link { + text-decoration: none; + color: #fff; + background-color: #007bff; + padding: 10px 20px; + border-radius: 5px; + font-size: 1.5rem; + display: inline-block; +}