Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Implement AleRax #93

Open
austinhpatton opened this issue Oct 8, 2023 · 0 comments
Open

Implement AleRax #93

austinhpatton opened this issue Oct 8, 2023 · 0 comments
Labels
enhancement New feature or request

Comments

@austinhpatton
Copy link
Collaborator

Description of feature

We should look into implementing the recently released AleRax into the workflow, potentially as an alternative to generax/speciesrax:

https://www.biorxiv.org/content/10.1101/2023.10.06.561091v1

Capable of efficiently inferring both reconciled gene family trees and a shared species tree. Depending on it's implementation of parallelization, may prove a challenge (I.e. if individual gene tree inference tasks need to communicate with a single, shared species tree inference task with MPI).

@austinhpatton austinhpatton added the enhancement New feature or request label Oct 8, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
None yet
Development

No branches or pull requests

1 participant