activate.sh

#!/bin/bash

export condaname="fermitools"

function string_replace {
    echo "${1/\*/$2}"
}

# This instructs the Fermi ST where to find their data

export INST_DIR=$CONDA_PREFIX/share/${condaname}
export FERMI_DIR=$INST_DIR
export BASE_DIR=$INST_DIR
export EXTFILESSYS=$CONDA_PREFIX/share/${condaname}/refdata/fermi
export GENERICSOURCESDATAPATH=$CONDA_PREFIX/share/${condaname}/data/genericSources
export TIMING_DIR=$CONDA_PREFIX/share/${condaname}/refdata/fermi/jplephem
#export PFILES=$CONDA_PREFIX/share/${condaname}/syspfiles

# Keep a copy of the current path so we can restore
# upon deactivation
export FERMI_OLD_PATH=$PATH

# Keep a copy of the CALDB path if it exists so                                                                                                                                   
# we can restore upon deactivation                                                                                                                                                 
if [ "CALDB" ]; then
    export CALDB_OLD_PATH=$CALDB
fi

# Set necessary CALDB variables                                                                                                                                                    
export CALDBALIAS=$FERMI_DIR/data/caldb/software/tools/alias_config.fits
export CALDBCONFIG=$FERMI_DIR/data/caldb/software/tools/caldb.config
export CALDBROOT=$FERMI_DIR/data/caldb
export CALDB=$FERMI_DIR/data/caldb


# The new path to check or add
NEW_FERMI_PATH=$CONDA_PREFIX/bin/${condaname}

# Check that the new path is not already a member of the $PATH
if [[ ${PATH} != *"${NEW_FERMI_PATH}"* ]]; then

    # Add the new fermi path to the $PATH
    export PATH=${NEW_FERMI_PATH}:${PATH}

fi

# Add path for the ST binaries

# Setup PFILES

# Save old value (this will be the empty string if
# PFILES is not set)
export FERMI_OLD_PFILES=$PFILES

if [ -z ${PFILES+x} ]; then

    # PFILES is unset, set it appropriately
    mkdir -p $HOME/pfiles

    export PFILES=".:${HOME}/pfiles;${INST_DIR}/syspfiles"

else

    if [[ ${PFILES} == *[';']* ]]; then

        # current value already contains a ';', which
        # separates read-write pfiles path to read-only
        # pfiles path. Just add the ST one

        export PFILES="${PFILES}:${INST_DIR}/syspfiles"

    else

        # Current value doesn't have any read-only
        # pfiles path. Add the ST one.

        export PFILES="${PFILES};${INST_DIR}/syspfiles"

    fi


fi

# Make sure there is no ROOTSYS (which would confuse ROOT)
unset ROOTSYS

# Check whether the .rootrc file exists in the user home,
# if not create it
#if [ -f "${HOME}/.rootrc" ]; then
        
    # Make it read/write
#    chmod u+rw ${HOME}/.rootrc

#else
        
    # File does not exist. Copy the system.rootrc file
#    cp ${CONDA_PREFIX}/etc/root/system.rootrc ${HOME}/.rootrc
    
    # Make it read/write
#    chmod u+rw ${HOME}/.rootrc

#fi

# We need to make sure that the path to the ST library dir is
# contained in the paths that ROOT will search for libraries, 
# because the dynamic loader of ROOT does not honor RPATH

cat << EOF | root -b -l
// I am using "default" as default value because I was having problems
// using the empty string.
TString old_value=gEnv->GetValue("Unix.*.Root.DynamicPath", "default");

// The formatting with the { at the end of the line is NECESSARY
// for this to work properly (as this is input for the stdin of
// root)
if(!old_value.Contains("lib/${condaname}")) { 
    TString new_value = old_value + TString(":${CONDA_PREFIX}/lib/${condaname}/");

    gEnv->SetValue("Unix.*.Root.DynamicPath", new_value);

    gEnv->SaveLevel(kEnvUser);
}

exit();

EOF

# Add aliases for python executables
sitepackagesdir=$(python -c "from distutils.sysconfig import get_python_lib; print(get_python_lib())")

alias gtburst="python $sitepackagesdir/${condaname}/gtburst.py"
alias ModelEditor="python $sitepackagesdir/${condaname}/ModelEditor.py"
alias ObsSim="python $sitepackagesdir/${condaname}/ObsSim.py"

# Issue warnings if PYTHONPATH and/or LD_LIBRARY_PATH are set

if [ -z ${LD_LIBRARY_PATH+x} ]; then

    :

else

    # Issue warning
    echo "You have LD_LIBRARY_PATH set. This might interfere with the correct functioning of conda and the Fermi ST"

fi

if [ -z ${PYTHONPATH+x} ]; then

    :

else

    # Issue warning
    echo "You have PYTHONPATH set. This might interfere with the correct functioning of conda and the Fermi ST"

fi