From d748a29c59a4cf4b83eefc291182b580193eb7c3 Mon Sep 17 00:00:00 2001 From: Vijay Vammi Date: Sun, 30 Jul 2023 06:23:13 +0100 Subject: [PATCH 1/2] feat: Improving bash functionality, map catalog being specific to iterable --- magnus/graph.py | 7 +- magnus/nodes.py | 54 +-- magnus/sdk.py | 1 + magnus/tasks.py | 275 +++++++---- poetry.lock | 723 +++++++++++++++++------------ pyproject.toml | 2 +- tests/magnus/test_nodes.py | 17 +- tests/magnus/test_tasks.py | 47 +- tests/scenarios/conftest.py | 6 +- tests/scenarios/test_traversals.py | 4 +- 10 files changed, 663 insertions(+), 473 deletions(-) diff --git a/magnus/graph.py b/magnus/graph.py index 7f918928..d70d7c87 100644 --- a/magnus/graph.py +++ b/magnus/graph.py @@ -382,9 +382,10 @@ def create_node(name: str, step_config: dict, internal_branch_name: str = None): internal_name = internal_branch_name + "." + name try: + node_type = step_config.pop("type") # Remove the type as it is not used in node creation. node_mgr = driver.DriverManager( namespace="nodes", - name=step_config["type"], + name=node_type, invoke_on_load=True, invoke_kwds={ "name": name, @@ -394,6 +395,10 @@ def create_node(name: str, step_config: dict, internal_branch_name: str = None): }, ) return node_mgr.driver + except KeyError: + msg = "The node configuration does not contain the required key 'type'." + logger.exception(step_config) + raise Exception(msg) except Exception as _e: msg = ( f"Could not find the node type {step_config['type']}. Please ensure you have installed " diff --git a/magnus/nodes.py b/magnus/nodes.py index bb389396..78f69519 100644 --- a/magnus/nodes.py +++ b/magnus/nodes.py @@ -2,16 +2,17 @@ import logging import multiprocessing from collections import OrderedDict +from copy import deepcopy from datetime import datetime from typing import List, Optional, Union from pydantic import BaseModel, Extra -from stevedore import driver import magnus from magnus import defaults, utils from magnus.datastore import StepAttempt from magnus.graph import create_graph +from magnus.tasks import create_task logger = logging.getLogger(defaults.NAME) @@ -41,6 +42,9 @@ class BaseNode: errors_on: List[str] = [] class Config(BaseModel): + class Config: + extra = Extra.forbid + executor_config: dict = {} def __init__(self, *args, **kwargs): @@ -55,7 +59,7 @@ def __init__(self, name, internal_name, config, internal_branch_name=None): # pylint: disable=R0914,R0913 self.name = name self.internal_name = internal_name #  Dot notation naming of the steps - self.config = self.Config(**config) + self.config = self.Config(**config) # Will hold the config as it comes in self.internal_branch_name = internal_branch_name # parallel, map, dag only have internal names self.is_composite = False @@ -394,42 +398,25 @@ class TaskNode(BaseNode): errors_on = ["branches"] class Config(BaseNode.Config): - next_node: str command: str command_type: str = defaults.COMMAND_TYPE - command_config: dict = {} + image: str = "" + next_node: str catalog: dict = {} retry: int = 1 on_failure: str = "" + command_config: dict = {} def __init__(self, name, internal_name, config, internal_branch_name=None): super().__init__(name, internal_name, config, internal_branch_name) - task_type = self.config.command_type - logger.info(f"Trying to get a task of type {task_type}") - try: - task_mgr = driver.DriverManager(namespace="tasks", name=task_type, invoke_on_load=False) - except Exception as _e: - msg = ( - f"Could not find the task type {task_type}. Please ensure you have installed the extension that" - " provides the task type. " - "\nCore supports: python(default), python-lambda, shell, notebook. python-function" - ) - raise Exception(msg) from _e - self.task = task_mgr.driver - - def _to_dict(self) -> dict: - """ - The dict representation of the node. - - Returns: - dict: The dict representation of the node. - """ - config_dict = dict(self.config.dict()) - config_dict["type"] = self.node_type - config_dict["command_config"] = self.config.command_config - config_dict["command_type"] = self.task.task_type - return config_dict + self.executable = create_task( + node_name=self.name, + command=self.config.command, + image=self.config.image, + command_type=self.config.command_type, + command_config=self.config.command_config, + ) def execute(self, executor, mock=False, map_variable: dict = None, **kwargs) -> StepAttempt: """ @@ -450,10 +437,7 @@ def execute(self, executor, mock=False, map_variable: dict = None, **kwargs) -> attempt_log.status = defaults.SUCCESS if not mock: # Do not run if we are mocking the execution, could be useful for caching and dry runs - command_config = {"command": self.config.command} - command_config.update(self.config.command_config) - task = self.task(config=command_config) - task.execute_command(map_variable=map_variable) + self.executable.execute_command(map_variable=map_variable) except Exception as _e: # pylint: disable=W0703 logger.exception("Task failed") attempt_log.status = defaults.FAIL @@ -684,7 +668,7 @@ def get_sub_graphs(self): branches = {} for branch_name, branch_config in self.config.branches.items(): sub_graph = create_graph( - branch_config, + deepcopy(branch_config), internal_branch_name=self.internal_name + "." + branch_name, ) branches[self.internal_name + "." + branch_name] = sub_graph @@ -892,7 +876,7 @@ def get_sub_graph(self): branch_config = self.config.branch branch = create_graph( - branch_config, + deepcopy(branch_config), internal_branch_name=self.internal_name + "." + self.branch_placeholder_name, ) return branch diff --git a/magnus/sdk.py b/magnus/sdk.py index 2cfc567b..0f46ac31 100644 --- a/magnus/sdk.py +++ b/magnus/sdk.py @@ -216,6 +216,7 @@ def construct(self, steps: List[Task]): messages: List[str] = [] for step in steps: step._construct_node() + print(step.node.__dict__) messages.extend(step.node.validate()) # type: ignore if not steps: diff --git a/magnus/tasks.py b/magnus/tasks.py index 5e13a55d..7913cf0f 100644 --- a/magnus/tasks.py +++ b/magnus/tasks.py @@ -6,64 +6,28 @@ import os import subprocess import sys +from typing import ClassVar, Optional -from pydantic import BaseModel +from pydantic import BaseModel, Extra, validator +from stevedore import driver -from magnus import defaults, put_in_catalog, utils +from magnus import defaults, utils logger = logging.getLogger(defaults.NAME) -@contextlib.contextmanager -def output_to_file(path: str): - """Context manager to put the output of a function execution to catalog. - - Args: - path (str): Mostly the command you are executing. - - """ - log_file = open(f"{path}.log", "w") - f = io.StringIO() - try: - with contextlib.redirect_stdout(f): - yield - finally: - print(f.getvalue()) # print to console - log_file.write(f.getvalue()) # Print to file - - f.close() - log_file.close() - put_in_catalog(log_file.name) - os.remove(log_file.name) - - # --8<-- [start:docs] -class BaseTaskType: # pylint: disable=too-few-public-methods +class BaseTaskType(BaseModel): # pylint: disable=too-few-public-methods """A base task class which does the execution of command defined by the user.""" - task_type = "" - - class Config(BaseModel): - command: str - - def __init__(self, config: dict = None): - config = config or {} - self.config = self.Config(**config) + task_type: ClassVar[str] = "" + command: str + node_name: str - @property - def command(self): - """Return the command to execute.""" - return self.config.command - - def _to_dict(self) -> dict: - """Return a dictionary representation of the task.""" - task = {} - task["command"] = self.command - task["config"] = self.config - - return task + class Config: + extra = Extra.forbid def _get_parameters(self, map_variable: dict = None, **kwargs) -> dict: """Return the parameters in scope for the execution. @@ -111,46 +75,44 @@ def _set_parameters(self, parameters: dict = None, **kwargs): logger.info(f"Setting User defined parameter {key} with value: {value}") os.environ[defaults.PARAMETER_PREFIX + key] = json.dumps(value) - -# --8<-- [end:docs] - - -class PythonFunctionType(BaseTaskType): - task_type = "python-function" - - def execute_command(self, map_variable: dict = None, **kwargs): - """Execute the python function as defined by the command. + @contextlib.contextmanager + def output_to_file(self, map_variable: dict = None): + """Context manager to put the output of a function execution to catalog. Args: - map_variable (dict, optional): If the node is part of an internal branch. Defaults to None. + map_variable (dict, optional): If the command is part of map node, the value of map. Defaults to None. + """ - parameters = self._get_parameters() - filtered_parameters = utils.filter_arguments_for_func(self.command, parameters, map_variable) + from magnus import put_in_catalog # Causing cyclic imports + log_file_name = self.node_name.replace(" ", "_") if map_variable: - os.environ[defaults.PARAMETER_PREFIX + "MAP_VARIABLE"] = json.dumps(map_variable) + for _, value in map_variable.items(): + log_file_name += "_" + str(value) - logger.info(f"Calling {self.command} with {filtered_parameters}") + log_file = open(log_file_name, "w") - with output_to_file(self.command) as _: - try: - user_set_parameters = self.command(**filtered_parameters) - except Exception as _e: - msg = f"Call to the function {self.command} with {filtered_parameters} did not succeed.\n" - logger.exception(msg) - logger.exception(_e) - raise + f = io.StringIO() + try: + with contextlib.redirect_stdout(f): + yield + finally: + print(f.getvalue()) # print to console + log_file.write(f.getvalue()) # Print to file - if map_variable: - del os.environ[defaults.PARAMETER_PREFIX + "MAP_VARIABLE"] + f.close() + log_file.close() + put_in_catalog(log_file.name) + os.remove(log_file.name) - self._set_parameters(user_set_parameters) + +# --8<-- [end:docs] class PythonTaskType(BaseTaskType): # pylint: disable=too-few-public-methods """The task class for python command.""" - task_type = "python" + task_type: ClassVar[str] = "python" def execute_command(self, map_variable: dict = None, **kwargs): """Execute the notebook as defined by the command.""" @@ -166,7 +128,8 @@ def execute_command(self, map_variable: dict = None, **kwargs): os.environ[defaults.PARAMETER_PREFIX + "MAP_VARIABLE"] = json.dumps(map_variable) logger.info(f"Calling {func} from {module} with {filtered_parameters}") - with output_to_file(self.command) as _: + + with self.output_to_file(map_variable=map_variable) as _: try: user_set_parameters = f(**filtered_parameters) except Exception as _e: @@ -184,7 +147,7 @@ def execute_command(self, map_variable: dict = None, **kwargs): class PythonLambdaTaskType(BaseTaskType): # pylint: disable=too-few-public-methods """The task class for python-lambda command.""" - task_type = "python-lambda" + task_type: ClassVar[str] = "python-lambda" def execute_command(self, map_variable: dict = None, **kwargs): """Execute the lambda function as defined by the command. @@ -228,24 +191,23 @@ def execute_command(self, map_variable: dict = None, **kwargs): class NotebookTaskType(BaseTaskType): """The task class for Notebook based execution.""" - task_type = "notebook" + task_type: ClassVar[str] = "notebook" + notebook_output_path: str = "" + optional_ploomber_args: dict = {} - class Config(BaseTaskType.Config): - notebook_output_path: str = "" - optional_ploomber_args: dict = {} + @validator("command") + def notebook_should_end_with_ipynb(cls, command: str): + if not command.endswith(".ipynb"): + raise Exception("Notebook task should point to a ipynb file") - @property - def notebook_output_path(self): - if self.config.notebook_output_path: - return self.config.notebook_output_path + return command - return "".join(self.command.split(".")[:-1]) + "_out.ipynb" + @validator("notebook_output_path") + def correct_notebook_output_path(cls, notebook_output_path: str, values: dict): + if notebook_output_path: + return notebook_output_path - def __init__(self, config: dict = None): - super().__init__(config) - - if not self.config.command.endswith(".ipynb"): - raise Exception("Notebook task should point to a ipynb file") + return "".join(values["command"].command.split(".")[:-1]) + "_out.ipynb" def execute_command(self, map_variable: dict = None, **kwargs): """Execute the python notebook as defined by the command. @@ -260,15 +222,20 @@ def execute_command(self, map_variable: dict = None, **kwargs): try: import ploomber_engine as pm + from magnus import put_in_catalog # Causes issues with cyclic import + parameters = self._get_parameters() filtered_parameters = parameters + notebook_output_path = self.notebook_output_path + if map_variable: os.environ[defaults.PARAMETER_PREFIX + "MAP_VARIABLE"] = json.dumps(map_variable) - notebook_output_path = self.notebook_output_path + for _, value in map_variable.items(): + notebook_output_path += "_" + str(value) - ploomber_optional_args = self.config.optional_ploomber_args # type: ignore + ploomber_optional_args = self.optional_ploomber_args # type: ignore kwds = { "input_path": self.command, @@ -296,14 +263,11 @@ def execute_command(self, map_variable: dict = None, **kwargs): class ShellTaskType(BaseTaskType): """The task class for shell based commands.""" - task_type = "shell" + task_type: ClassVar[str] = "shell" def execute_command(self, map_variable: dict = None, **kwargs): - # TODO can we do this without shell=True. Hate that but could not find a way out - # This is horribly weird, focussing only on python ways of doing for now - # It might be that we have to write a bash/windows script that does things for us - # Need to over-ride set parameters too - # There could be some ideas from ploomber that are useful here. + # Using shell=True as we want to have chained commands to be executed in the same shell. + # TODO can we do this without shell=True. """Execute the shell command as defined by the command. Args: @@ -314,15 +278,120 @@ def execute_command(self, map_variable: dict = None, **kwargs): if map_variable: subprocess_env[defaults.PARAMETER_PREFIX + "MAP_VARIABLE"] = json.dumps(map_variable) - result = subprocess.run( + with subprocess.Popen( self.command, - check=True, - env=subprocess_env, shell=True, + env=subprocess_env, stdout=subprocess.PIPE, - stderr=subprocess.PIPE, + stderr=subprocess.STDOUT, universal_newlines=True, - ) + ) as proc, self.output_to_file(map_variable=map_variable) as _: + for line in proc.stdout: # type: ignore + logger.info(line) + print(line) + + proc.wait() + if proc.returncode != 0: + raise Exception("Command failed") + + +class ContainerTaskType(BaseTaskType): + """ + The task class for container based execution. + """ + + task_type: ClassVar[str] = "container" + image: str + + def execute_command(self, map_variable: dict = None, **kwargs): + # Conditional import + try: + import docker # pylint: disable=C0415 + + client = docker.from_env() + except ImportError as e: + msg = "Task type of container requires docker to be installed. Please install via optional: docker" + logger.exception(msg) + raise Exception(msg) from e + except Exception as ex: + logger.exception("Could not get access to docker") + raise Exception("Could not get the docker socket file, do you have docker installed?") from ex + + container_env_variables = {} - print(result.stdout) - print(result.stderr) + for key, value in self._get_parameters().items(): + container_env_variables[defaults.PARAMETER_PREFIX + key] = value + + if map_variable: + container_env_variables[defaults.PARAMETER_PREFIX + "MAP_VARIABLE"] = json.dumps(map_variable) + + try: + container = client.containers.create( + image=self.config.image, + command=self.command, + auto_remove=False, + network_mode="host", + environment=container_env_variables, + ) + container.start() + stream = container.logs(stream=True, follow=True) + while True: + try: + output = next(stream).decode("utf-8") + output = output.strip("\r\n") + logger.info(output) + except StopIteration: + logger.info("Docker Run completed") + break + + except Exception as _e: + logger.exception("Problems with spinning up the container") + raise _e + + +def create_task( + node_name: str, + command: str, + image: str = "", + command_type: str = defaults.COMMAND_TYPE, + command_config: Optional[dict] = None, +) -> BaseTaskType: + """ + Creates a task object from the command configuration. + + Args: + command (str): The command to run + image (str, optional): Only in case of a container based command. Defaults to "". + command_type (str, optional): The command type. Defaults to defaults.COMMAND_TYPE, python + command_config (Optional[dict], optional): Any optional command config. Defaults to None. + + Returns: + tasks.BaseTaskType: The command object + """ + # If we want to run a container, we need to know which container. + if command_type == ContainerTaskType.task_type and not image: + msg = "Image is required when trying to run a container task type" + logger.exception(msg) + raise Exception(msg) + + command_config = command_config or {} + command_config["command"] = command + command_config["node_name"] = node_name + + if image: + command_config["image"] = image + + try: + task_mgr = driver.DriverManager( + namespace="tasks", + name=command_type, + invoke_on_load=True, + invoke_kwds=command_config, + ) + return task_mgr.driver + except Exception as _e: + msg = ( + f"Could not find the task type {command_type}. Please ensure you have installed " + "the extension that provides the node type." + ) + raise Exception(msg) from _e diff --git a/poetry.lock b/poetry.lock index 50459ad9..3e6eeca0 100644 --- a/poetry.lock +++ b/poetry.lock @@ -246,99 +246,99 @@ files = [ [[package]] name = "charset-normalizer" -version = "3.1.0" +version = "3.2.0" description = "The Real First Universal Charset Detector. 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hash = "sha256:b75ddc264f0ba5615db7ba217daeb99701ad295353c45f9e95963337ceeeffb2"}, ] [[package]] name = "urllib3" -version = "2.0.2" +version = "2.0.3" description = "HTTP library with thread-safe connection pooling, file post, and more." category = "main" optional = false python-versions = ">=3.7" files = [ - {file = "urllib3-2.0.2-py3-none-any.whl", hash = "sha256:d055c2f9d38dc53c808f6fdc8eab7360b6fdbbde02340ed25cfbcd817c62469e"}, - {file = "urllib3-2.0.2.tar.gz", hash = "sha256:61717a1095d7e155cdb737ac7bb2f4324a858a1e2e6466f6d03ff630ca68d3cc"}, + {file = "urllib3-2.0.3-py3-none-any.whl", hash = "sha256:48e7fafa40319d358848e1bc6809b208340fafe2096f1725d05d67443d0483d1"}, + {file = "urllib3-2.0.3.tar.gz", hash = "sha256:bee28b5e56addb8226c96f7f13ac28cb4c301dd5ea8a6ca179c0b9835e032825"}, ] [package.extras] @@ -2642,25 +2767,25 @@ zstd = ["zstandard (>=0.18.0)"] [[package]] name = "virtualenv" -version = "20.23.0" +version = "20.23.1" description = "Virtual Python Environment builder" category = "dev" optional = false python-versions = ">=3.7" files = [ - {file = "virtualenv-20.23.0-py3-none-any.whl", hash = "sha256:6abec7670e5802a528357fdc75b26b9f57d5d92f29c5462ba0fbe45feacc685e"}, - {file = "virtualenv-20.23.0.tar.gz", hash = "sha256:a85caa554ced0c0afbd0d638e7e2d7b5f92d23478d05d17a76daeac8f279f924"}, + {file = "virtualenv-20.23.1-py3-none-any.whl", hash = "sha256:34da10f14fea9be20e0fd7f04aba9732f84e593dac291b757ce42e3368a39419"}, + {file = "virtualenv-20.23.1.tar.gz", hash = "sha256:8ff19a38c1021c742148edc4f81cb43d7f8c6816d2ede2ab72af5b84c749ade1"}, ] [package.dependencies] distlib = ">=0.3.6,<1" -filelock = ">=3.11,<4" -importlib-metadata = {version = ">=6.4.1", markers = "python_version < \"3.8\""} -platformdirs = ">=3.2,<4" +filelock = ">=3.12,<4" +importlib-metadata = {version = ">=6.6", markers = "python_version < \"3.8\""} +platformdirs = ">=3.5.1,<4" [package.extras] -docs = ["furo (>=2023.3.27)", "proselint (>=0.13)", "sphinx (>=6.1.3)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=22.12)"] -test = ["covdefaults (>=2.3)", "coverage (>=7.2.3)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.3.1)", "pytest-env (>=0.8.1)", "pytest-freezegun (>=0.4.2)", "pytest-mock (>=3.10)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=67.7.1)", "time-machine (>=2.9)"] +docs = ["furo (>=2023.5.20)", "proselint (>=0.13)", "sphinx (>=7.0.1)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"] +test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.3.1)", "pytest-env (>=0.8.1)", "pytest-freezer (>=0.4.6)", "pytest-mock (>=3.10)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=67.8)", "time-machine (>=2.9)"] [[package]] name = "watchdog" @@ -2728,14 +2853,14 @@ files = [ [[package]] name = "websocket-client" -version = "1.5.2" +version = "1.6.1" description = "WebSocket client for Python with low level API options" category = "main" optional = true python-versions = ">=3.7" files = [ - {file = "websocket-client-1.5.2.tar.gz", hash = "sha256:c7d67c13b928645f259d9b847ab5b57fd2d127213ca41ebd880de1f553b7c23b"}, - {file = "websocket_client-1.5.2-py3-none-any.whl", hash = "sha256:f8c64e28cd700e7ba1f04350d66422b6833b82a796b525a51e740b8cc8dab4b1"}, + {file = "websocket-client-1.6.1.tar.gz", hash = "sha256:c951af98631d24f8df89ab1019fc365f2227c0892f12fd150e935607c79dd0dd"}, + {file = "websocket_client-1.6.1-py3-none-any.whl", hash = "sha256:f1f9f2ad5291f0225a49efad77abf9e700b6fef553900623060dad6e26503b9d"}, ] [package.extras] diff --git a/pyproject.toml b/pyproject.toml index 87e4c5e9..8975f750 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -102,7 +102,7 @@ magnus= 'magnus.cli:cli' "python-lambda" = "magnus.tasks:PythonLambdaTaskType" "shell" = "magnus.tasks:ShellTaskType" "notebook" = "magnus.tasks:NotebookTaskType" -"python-function" = "magnus.tasks:PythonFunctionType" +"container" = "magnus.tasks:ContainerTaskType" # Plugins for Nodes [tool.poetry.plugins."nodes"] diff --git a/tests/magnus/test_nodes.py b/tests/magnus/test_nodes.py index 50559b90..f70a659c 100644 --- a/tests/magnus/test_nodes.py +++ b/tests/magnus/test_nodes.py @@ -73,7 +73,7 @@ def test_base_node__get_branch_log_name_returns_map_modified_internal_name_if_ma def test_base_node__get_branch_by_name_raises_exception(): - node = nodes.BaseNode(name="test", internal_name="test", config={"catalog": "some settings"}) + node = nodes.BaseNode(name="test", internal_name="test", config={}) with pytest.raises(Exception): node._get_branch_by_name("fail") @@ -133,8 +133,7 @@ def test_task_node_sets_attempt_log_success_in_no_exception_of_execution(mocker, configuration = {"command": "test", "next": "next_node"} task_node = nodes.TaskNode(name="test", internal_name="test", config=configuration) - task_node.task = mocker.MagicMock() - task_node.task.execute_command = mocker.MagicMock() + task_node.executable = mocker.MagicMock() task_node.execute(executor=mock_executor) @@ -157,7 +156,7 @@ def test_fail_node_sets_branch_log_fail(mocker, monkeypatch): mock_executor.run_log_store.create_attempt_log = mocker.MagicMock(return_value=mock_attempt_log) mock_executor.run_log_store.get_branch_log = mocker.MagicMock(return_value=mock_branch_log) - node = nodes.FailNode(name="test", internal_name="test", config={"command": "nocommand"}) + node = nodes.FailNode(name="test", internal_name="test", config={}) node.execute(executor=mock_executor) @@ -172,7 +171,7 @@ def test_fail_node_sets_attempt_log_success_even_in_exception(mocker, monkeypatc mock_executor.run_log_store.create_attempt_log = mocker.MagicMock(return_value=mock_attempt_log) mock_executor.run_log_store.get_branch_log = mocker.MagicMock(side_effect=Exception()) - node = nodes.FailNode(name="test", internal_name="test", config={"command": "nocommand"}) + node = nodes.FailNode(name="test", internal_name="test", config={}) node.execute(executor=mock_executor) @@ -180,7 +179,7 @@ def test_fail_node_sets_attempt_log_success_even_in_exception(mocker, monkeypatc def test_fail_node_execute_as_graph_raises_exception(): - fail_node = nodes.FailNode(name="test", internal_name="test", config={"command": "nocommand"}) + fail_node = nodes.FailNode(name="test", internal_name="test", config={}) with pytest.raises(Exception): fail_node.execute_as_graph(None) @@ -194,7 +193,7 @@ def test_success_node_sets_branch_log_success(mocker, monkeypatch): mock_executor.run_log_store.create_attempt_log = mocker.MagicMock(return_value=mock_attempt_log) mock_executor.run_log_store.get_branch_log = mocker.MagicMock(return_value=mock_branch_log) - node = nodes.SuccessNode(name="test", internal_name="test", config={"command": "nocommand"}) + node = nodes.SuccessNode(name="test", internal_name="test", config={}) node.execute(executor=mock_executor) @@ -209,7 +208,7 @@ def test_success_node_sets_attempt_log_success_even_in_exception(mocker, monkeyp mock_executor.run_log_store.create_attempt_log = mocker.MagicMock(return_value=mock_attempt_log) mock_executor.run_log_store.get_branch_log = mocker.MagicMock(side_effect=Exception()) - node = nodes.SuccessNode(name="test", internal_name="test", config={"command": "nocommand"}) + node = nodes.SuccessNode(name="test", internal_name="test", config={}) node.execute(executor=mock_executor) @@ -217,7 +216,7 @@ def test_success_node_sets_attempt_log_success_even_in_exception(mocker, monkeyp def test_success_node_execute_as_graph_raises_exception(): - success_node = nodes.SuccessNode(name="test", internal_name="test", config={"command": "nocommand"}) + success_node = nodes.SuccessNode(name="test", internal_name="test", config={}) with pytest.raises(Exception): success_node.execute_as_graph(None) diff --git a/tests/magnus/test_tasks.py b/tests/magnus/test_tasks.py index 0da3ab7e..d4bbf5b9 100644 --- a/tests/magnus/test_tasks.py +++ b/tests/magnus/test_tasks.py @@ -8,38 +8,42 @@ @pytest.fixture def configuration(): - return {"command": "dummy"} + return {"command": "dummy", "node_name": "dummy"} def test_base_task_execute_command_raises_not_implemented_error(configuration): - base_execution_type = tasks.BaseTaskType(configuration) + base_execution_type = tasks.BaseTaskType(**configuration) with pytest.raises(NotImplementedError): base_execution_type.execute_command() def test_base_task_get_parameters_gets_from_utils(mocker, monkeypatch, configuration): - mock_get_user_set_parameters = mocker.MagicMock() + mock_get_user_set_parameters = mocker.MagicMock(configuration) monkeypatch.setattr(tasks.utils, "get_user_set_parameters", mock_get_user_set_parameters) - base_execution_type = tasks.BaseTaskType(configuration) + base_execution_type = tasks.BaseTaskType(**configuration) base_execution_type._get_parameters() mock_get_user_set_parameters.assert_called_once_with(remove=False) def test_base_task_set_parameters_does_nothing_if_no_parameters_sent(configuration): - base_execution_type = tasks.BaseTaskType(configuration) + base_execution_type = tasks.BaseTaskType(**configuration) base_execution_type._set_parameters() -def test_base_task_set_parameters_sets_environ_vars_if_sent(mocker, monkeypatch, configuration): +def test_base_task_set_parameters_sets_environ_vars_if_sent( + mocker, + monkeypatch, + configuration, +): mock_os_environ = {} monkeypatch.setattr(tasks.os, "environ", mock_os_environ) - base_execution_type = tasks.BaseTaskType(configuration) + base_execution_type = tasks.BaseTaskType(**configuration) base_execution_type._set_parameters(parameters={"x": 10}) assert mock_os_environ[defaults.PARAMETER_PREFIX + "x"] == "10" @@ -55,11 +59,11 @@ def __init__(self): monkeypatch.setattr(tasks.utils, "get_module_and_func_names", mocker.MagicMock(return_value=("idk", "func"))) monkeypatch.setattr(tasks.importlib, "import_module", mocker.MagicMock(return_value=DummyModule())) - monkeypatch.setattr(tasks, "output_to_file", contextlib.nullcontext) + monkeypatch.setattr(tasks.BaseTaskType, "output_to_file", mocker.MagicMock(return_value=contextlib.nullcontext())) monkeypatch.setattr(tasks.utils, "filter_arguments_for_func", mocker.MagicMock(return_value={"a": 1})) - py_exec = tasks.PythonTaskType(configuration) + py_exec = tasks.PythonTaskType(**configuration) with pytest.raises(Exception): py_exec.execute_command() @@ -73,10 +77,11 @@ def __init__(self): monkeypatch.setattr(tasks.utils, "get_module_and_func_names", mocker.MagicMock(return_value=("idk", "func"))) monkeypatch.setattr(tasks.importlib, "import_module", mocker.MagicMock(return_value=DummyModule())) - monkeypatch.setattr(tasks, "output_to_file", contextlib.nullcontext) + monkeypatch.setattr(tasks.BaseTaskType, "output_to_file", mocker.MagicMock(return_value=contextlib.nullcontext())) monkeypatch.setattr(tasks.utils, "filter_arguments_for_func", mocker.MagicMock(return_value={})) - py_exec = tasks.PythonTaskType(configuration) + py_exec = tasks.PythonTaskType(**configuration) + py_exec.execute_command() dummy_func.assert_called_once() @@ -91,10 +96,10 @@ def __init__(self): monkeypatch.setattr(tasks.utils, "get_module_and_func_names", mocker.MagicMock(return_value=("idk", "func"))) monkeypatch.setattr(tasks.importlib, "import_module", mocker.MagicMock(return_value=DummyModule())) - monkeypatch.setattr(tasks, "output_to_file", contextlib.nullcontext) + monkeypatch.setattr(tasks.BaseTaskType, "output_to_file", mocker.MagicMock(return_value=contextlib.nullcontext())) monkeypatch.setattr(tasks.utils, "filter_arguments_for_func", mocker.MagicMock(return_value={"a": 1})) - py_exec = tasks.PythonTaskType(configuration) + py_exec = tasks.PythonTaskType(**configuration) py_exec.execute_command() dummy_func.assert_called_once_with(a=1) @@ -108,10 +113,10 @@ def __init__(self): monkeypatch.setattr(tasks.utils, "get_module_and_func_names", mocker.MagicMock(return_value=("idk", "func"))) monkeypatch.setattr(tasks.importlib, "import_module", mocker.MagicMock(return_value=DummyModule())) - monkeypatch.setattr(tasks, "output_to_file", contextlib.nullcontext) + monkeypatch.setattr(tasks.BaseTaskType, "output_to_file", mocker.MagicMock(return_value=contextlib.nullcontext())) monkeypatch.setattr(tasks.utils, "filter_arguments_for_func", mocker.MagicMock(return_value={"a": 1})) - py_exec = tasks.PythonTaskType(configuration) + py_exec = tasks.PythonTaskType(**configuration) py_exec.execute_command(map_variable={"map_name": "map_value"}) dummy_func.assert_called_once_with(a=1) @@ -125,12 +130,12 @@ def __init__(self): monkeypatch.setattr(tasks.utils, "get_module_and_func_names", mocker.MagicMock(return_value=("idk", "func"))) monkeypatch.setattr(tasks.importlib, "import_module", mocker.MagicMock(return_value=DummyModule())) - monkeypatch.setattr(tasks, "output_to_file", contextlib.nullcontext) + monkeypatch.setattr(tasks.BaseTaskType, "output_to_file", mocker.MagicMock(return_value=contextlib.nullcontext())) monkeypatch.setattr( tasks.utils, "filter_arguments_for_func", mocker.MagicMock(return_value={"a": 1, "map_name": "map_value"}) ) - py_exec = tasks.PythonTaskType(configuration) + py_exec = tasks.PythonTaskType(**configuration) py_exec.execute_command() dummy_func.assert_called_once_with(a=1, map_name="map_value") @@ -144,10 +149,10 @@ def __init__(self): monkeypatch.setattr(tasks.utils, "get_module_and_func_names", mocker.MagicMock(return_value=("idk", "func"))) monkeypatch.setattr(tasks.importlib, "import_module", mocker.MagicMock(return_value=DummyModule())) - monkeypatch.setattr(tasks, "output_to_file", contextlib.nullcontext) + monkeypatch.setattr(tasks.BaseTaskType, "output_to_file", mocker.MagicMock(return_value=contextlib.nullcontext())) monkeypatch.setattr(tasks.utils, "filter_arguments_for_func", mocker.MagicMock(return_value={"a": 1})) - py_exec = tasks.PythonTaskType(configuration) + py_exec = tasks.PythonTaskType(**configuration) py_exec.execute_command(map_variable="iterme") assert defaults.PARAMETER_PREFIX + "a" in os.environ @@ -157,7 +162,7 @@ def __init__(self): def test_python_lambda_task_type_execute_command_raises_for_under_and_dunder(): - lambda_exec = tasks.PythonLambdaTaskType({"command": "_ and __"}) + lambda_exec = tasks.PythonLambdaTaskType(command="_ and __", node_name="dummy") with pytest.raises(Exception): lambda_exec.execute_command() @@ -169,7 +174,7 @@ def test_notebook_raises_exception_if_command_is_not_a_notebook(): def test_notebook_raises_exception_if_ploomber_is_not_installed(mocker, monkeypatch): - task_exec = tasks.NotebookTaskType(config={"command": "test.ipynb"}) + task_exec = tasks.NotebookTaskType(command="test.ipynb", node_name="dummy") with pytest.raises(Exception): task_exec.execute_command() diff --git a/tests/scenarios/conftest.py b/tests/scenarios/conftest.py index 713e0f0c..7e4a93ac 100644 --- a/tests/scenarios/conftest.py +++ b/tests/scenarios/conftest.py @@ -8,11 +8,12 @@ def as_is_node(): def _closure(name, next_node, on_failure=""): step_config = { "command": "does not matter", - "command_type": "python-function", + "command_type": "python", "type": "as-is", "next": next_node, "on_failure": on_failure, } + return graph.create_node(name=name, step_config=step_config) return _closure @@ -23,7 +24,7 @@ def as_is_container_node(): def _closure(name, next_node, on_failure=""): step_config = { "command": "does not matter", - "command_type": "python-function", + "command_type": "python", "type": "as-is", "next": next_node, "on_failure": on_failure, @@ -44,6 +45,7 @@ def _closure(name, next_node, on_failure=""): "next": next_node, "on_failure": on_failure, } + return graph.create_node(name=name, step_config=step_config) return _closure diff --git a/tests/scenarios/test_traversals.py b/tests/scenarios/test_traversals.py index 461e655e..1e7f434b 100644 --- a/tests/scenarios/test_traversals.py +++ b/tests/scenarios/test_traversals.py @@ -222,8 +222,8 @@ def test_failure(fail_graph): pipeline_file=str(context_dir_path / "dag.yaml"), run_id=run_id, ) - except: - pass + except Exception as ex: + print(ex) try: run_log = get_run_log(context_dir_path, run_id) From e7593225161181dc99da736e95f68bf18a1525bf Mon Sep 17 00:00:00 2001 From: Vijay Vammi Date: Sun, 30 Jul 2023 07:02:07 +0100 Subject: [PATCH 2/2] fix: release process PSR fix to 7.x.x --- .github/workflows/release.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/release.yaml b/.github/workflows/release.yaml index 080b51c9..c823695e 100644 --- a/.github/workflows/release.yaml +++ b/.github/workflows/release.yaml @@ -27,7 +27,7 @@ jobs: - uses: actions/setup-python@v4 with: python-version: 3.8 - - run: python -m pip install python-semantic-release + - run: python -m pip install python-semantic-release==7.34.6 - name: Figure version id: last_tag run: |