diff --git a/.github/workflows/docs.yaml b/.github/workflows/docs.yaml index 4d05ab54..997b0857 100644 --- a/.github/workflows/docs.yaml +++ b/.github/workflows/docs.yaml @@ -9,10 +9,10 @@ jobs: runs-on: ubuntu-latest steps: - uses: actions/checkout@v2 - - uses: actions/setup-python@v2 - with: - python-version: 3.8 - - run: python -m pip install poetry + - name: Install uv + run: curl -LsSf https://astral.sh/uv/install.sh | sh + - name: "Set up Python" + run: uv python install - run: | - python -m poetry install --only docs - poetry run mkdocs gh-deploy --force + uv sync --only-group docs + uv run mkdocs gh-deploy --force diff --git a/.github/workflows/pr.yaml b/.github/workflows/pr.yaml index 27f8b63e..a59f6f2a 100644 --- a/.github/workflows/pr.yaml +++ b/.github/workflows/pr.yaml @@ -7,16 +7,14 @@ on: - "mkdocs.yml" branches: - "main" + workflow_dispatch: + workflow_call: jobs: PRCheck: runs-on: ubuntu-latest steps: - uses: actions/checkout@v3 - - uses: actions/setup-python@v4 - with: - python-version: 3.8 - - run: python -m pip install poetry - run: | # Download the binary curl -sLO https://github.com/argoproj/argo-workflows/releases/download/v3.5.4/argo-linux-amd64.gz @@ -33,6 +31,23 @@ jobs: # Test installation argo version - - run: | - python -m poetry install --without docs,binary,perf,tutorial,compare - poetry run tox + - name: Install uv + run: curl -LsSf https://astral.sh/uv/install.sh | sh + + - name: "Set up Python" + run: uv python install + + - name: Install the project + run: uv sync --all-extras --dev + + - name: Run lint + # For example, using `flake8` + run: uvx ruff format + + - name: Run tests + run: | + export PYTHONDONTWRITEBYTECODE=1 + uv run pytest -m "not container" + + - name: mypy + run: uv run mypy runnable extensions diff --git a/.github/workflows/release.yaml b/.github/workflows/release.yaml index c80689da..a3fb532f 100644 --- a/.github/workflows/release.yaml +++ b/.github/workflows/release.yaml @@ -6,35 +6,10 @@ on: - "examples/**" branches: - "main" - - "rc" jobs: PRCheck: - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v3 - - uses: actions/setup-python@v4 - with: - python-version: 3.9 - - run: | - # Download the binary - curl -sLO https://github.com/argoproj/argo-workflows/releases/download/v3.5.4/argo-linux-amd64.gz - - # Unzip - gunzip argo-linux-amd64.gz - - # Make binary executable - chmod +x argo-linux-amd64 - - # Move binary to path - mv ./argo-linux-amd64 /usr/local/bin/argo - - # Test installation - argo version - - run: python -m pip install poetry - - run: | - python -m poetry install --without docs,binary,perf,tutorial,compare - poetry run tox + uses: "./.github/workflows/pr.yaml" Release: runs-on: ubuntu-latest @@ -43,27 +18,24 @@ jobs: - uses: actions/checkout@v3 with: fetch-depth: 0 - - uses: actions/setup-python@v4 - with: - python-version: 3.9 - - run: python -m pip install poetry + - name: Install uv + run: curl -LsSf https://astral.sh/uv/install.sh | sh + - name: "Set up Python" + run: uv python install - run: | - python -m poetry install --only release - + uv sync --only-group release - name: Figure version continue-on-error: true env: GH_TOKEN: "${{ secrets.GITHUB_TOKEN }}" id: last_tag run: | - CURRENT=$(python -m poetry run semantic-release -v --noop version --print-last-released) + CURRENT=$(uv run semantic-release -v --noop version --print-last-released) echo "Current: $CURRENT" - VERSION=$(python -m poetry run semantic-release -v --noop version --print) + VERSION=$(uv run semantic-release -v --noop version --print) echo "new: $VERSION" - # python -m poetry run semantic-release version --tag --push - if [ "$CURRENT" == "$VERSION" ]; then echo "version=$VERSION" >> $GITHUB_OUTPUT exit 1 diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 4b80822a..708b6e4e 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -13,21 +13,13 @@ repos: exclude: assets - repo: https://github.com/charliermarsh/ruff-pre-commit # Ruff version. - rev: "v0.0.259" + rev: "v0.8.3" hooks: - id: ruff args: [--fix, --exit-non-zero-on-fix] exclude: ^tests - - repo: https://github.com/psf/black - rev: 23.1.0 - hooks: - - id: black - # It is recommended to specify the latest version of Python - # supported by your project here, or alternatively use - # pre-commit's default_language_version, see - # https://pre-commit.com/#top_level-default_language_version - language_version: python3.8 - + - id: ruff-format + exclude: ^tests - repo: https://github.com/jorisroovers/gitlint rev: v0.19.1 hooks: diff --git a/docs/iterative.md b/docs/iterative.md new file mode 100644 index 00000000..cc94f833 --- /dev/null +++ b/docs/iterative.md @@ -0,0 +1,44 @@ +## The problems we are trying to solve. + +- feature: + - Users should be able to record custom data to the logs. + +- There is some data that need not be replicated but should be captured in logs. + - DECISION: We would not play a role in sourcing the data and the user is expected to do it. + - There should be a provision to identify the source data as a soft get. + - This is true for large datasets. How true is that though? + - This data could be sourced from a different location than the catalog. + - This is a soft requirement and can be justified if it is not satisfied. + - For simplicity lets assume that this is part of the catalog location. + - This could be achieved by using a type of catalog that does not copy but records. + + +!!! note: + Can this be simplified by using a "cached catalog"? + +- cached catalog: + - the run log will capture the catalog metadata. + - The catalog will not be run id specific. + +- Cached behavior: Given a previous run. + - Users can refer to data generated from a previous run. + - If the step by name is part of the pipeline and executed successfully, we want to skip execution of the step. + - The logs should make it clear that it is a continuation of the previous run. + - Its OK to assume that the run log is maintained in the same way. + - Its OK to assume that the catalog is maintained in the same way. + + - Question about the recursive behavior. + - What if the referenced run is a continuation of the previous run? + - The desired behavior should be: + - original run_id + - continuation run_id + - ... + - The step will be skipped based on the status of penultimate run only. + + - What about many runs trying to write the same file all at once? + - Do we keep versions of it or error out? + - The desired behavior could be: + - do the processing. + - While saving, check for the existence of the file, + - If it exists, write a versioned file and error out. + - If it does not exist, continue successfully. diff --git a/examples/02-sequential/default_fail.py b/examples/02-sequential/default_fail.py index 6c7f8512..d20e8afc 100644 --- a/examples/02-sequential/default_fail.py +++ b/examples/02-sequential/default_fail.py @@ -21,7 +21,9 @@ def main(): step2 = PythonTask(name="step 2", function=raise_ex) # This will fail - step3 = Stub(name="step 3", terminate_with_success=True) # This step will not be executed + step3 = Stub( + name="step 3", terminate_with_success=True + ) # This step will not be executed pipeline = Pipeline(steps=[step1, step2, step3]) diff --git a/examples/03-parameters/passing_parameters_notebook.py b/examples/03-parameters/passing_parameters_notebook.py index 4ada02c1..169b16cf 100644 --- a/examples/03-parameters/passing_parameters_notebook.py +++ b/examples/03-parameters/passing_parameters_notebook.py @@ -43,7 +43,11 @@ def main(): ) pipeline = Pipeline( - steps=[write_parameters_from_notebook, read_parameters, read_parameters_in_notebook], + steps=[ + write_parameters_from_notebook, + read_parameters, + read_parameters_in_notebook, + ], ) _ = pipeline.execute() diff --git a/examples/06-parallel/nesting.py b/examples/06-parallel/nesting.py index 27bf543c..8804b905 100644 --- a/examples/06-parallel/nesting.py +++ b/examples/06-parallel/nesting.py @@ -54,7 +54,10 @@ def parallel_pipeline(execute: bool = True): parallel_step = Parallel( name="parallel step", terminate_with_success=True, - branches={"branch1": traversal(execute=False), "branch2": traversal(execute=False)}, + branches={ + "branch1": traversal(execute=False), + "branch2": traversal(execute=False), + }, ) pipeline = Pipeline(steps=[parallel_step]) @@ -69,7 +72,10 @@ def main(): parallel_step = Parallel( name="nested_parallel", terminate_with_success=True, - branches={"branch1": parallel_pipeline(execute=False), "branch2": parallel_pipeline(execute=False)}, + branches={ + "branch1": parallel_pipeline(execute=False), + "branch2": parallel_pipeline(execute=False), + }, ) pipeline = Pipeline(steps=[parallel_step]) diff --git a/examples/07-map/custom_reducer.py b/examples/07-map/custom_reducer.py index cb3b4314..76cbb62f 100644 --- a/examples/07-map/custom_reducer.py +++ b/examples/07-map/custom_reducer.py @@ -84,7 +84,12 @@ def iterable_branch(execute: bool = True): ) pipeline = Pipeline( - steps=[process_chunk_task_python, process_chunk_task_notebook, process_chunk_task_shell, read_chunk], + steps=[ + process_chunk_task_python, + process_chunk_task_notebook, + process_chunk_task_shell, + read_chunk, + ], ) if execute: diff --git a/examples/07-map/map.py b/examples/07-map/map.py index ca6fffee..4a5809e5 100644 --- a/examples/07-map/map.py +++ b/examples/07-map/map.py @@ -87,7 +87,12 @@ def iterable_branch(execute: bool = True): ) pipeline = Pipeline( - steps=[process_chunk_task_python, process_chunk_task_notebook, process_chunk_task_shell, read_chunk], + steps=[ + process_chunk_task_python, + process_chunk_task_notebook, + process_chunk_task_shell, + read_chunk, + ], ) if execute: diff --git a/examples/common/functions.py b/examples/common/functions.py index 0c475026..c21ce968 100644 --- a/examples/common/functions.py +++ b/examples/common/functions.py @@ -126,7 +126,9 @@ def process_chunk(chunk: int): return chunk * 10 -def read_processed_chunk(chunk: int, processed_python: int, processed_notebook: int, processed_shell: int): +def read_processed_chunk( + chunk: int, processed_python: int, processed_notebook: int, processed_shell: int +): """ A downstream step of process_chunk of map state which reads the processed chunk. Since the process_chunk returns the chunk multiplied by 10, we assert that. @@ -137,7 +139,10 @@ def read_processed_chunk(chunk: int, processed_python: int, processed_notebook: def assert_default_reducer( - processed_python: List[int], processed_notebook: List[int], processed_shell: List[int], chunks: List[int] + processed_python: List[int], + processed_notebook: List[int], + processed_shell: List[int], + chunks: List[int], ): """ Demonstrates the default reducer which just returns the list of processed chunks. @@ -147,7 +152,12 @@ def assert_default_reducer( assert processed_shell == [chunk * 1000 for chunk in chunks] -def assert_custom_reducer(processed_python: int, processed_notebook: int, processed_shell: int, chunks: List[int]): +def assert_custom_reducer( + processed_python: int, + processed_notebook: int, + processed_shell: int, + chunks: List[int], +): """ Asserts the custom reducer returns the max of all the processed chunks. """ diff --git a/examples/common/process_chunk.ipynb b/examples/common/process_chunk.ipynb index 55d705c6..7ced1b94 100644 --- a/examples/common/process_chunk.ipynb +++ b/examples/common/process_chunk.ipynb @@ -32,7 +32,7 @@ "metadata": {}, "outputs": [], "source": [ - "assert chunk*10 == processed_python" + "assert chunk * 10 == processed_python" ] }, { @@ -42,7 +42,7 @@ "metadata": {}, "outputs": [], "source": [ - "processed_notebook = processed_python*10" + "processed_notebook = processed_python * 10" ] } ], diff --git a/examples/common/write_parameters.ipynb b/examples/common/write_parameters.ipynb index da016317..32591dab 100644 --- a/examples/common/write_parameters.ipynb +++ b/examples/common/write_parameters.ipynb @@ -15,7 +15,7 @@ "\n", "from examples.common.functions import ComplexParams\n", "\n", - "pydantic_param = ComplexParams(x=10, foo=\"bar\")\n" + "pydantic_param = ComplexParams(x=10, foo=\"bar\")" ] }, { diff --git a/examples/comparisons/metaflow/main.py b/examples/comparisons/metaflow/main.py index 68724bd7..71ef379c 100644 --- a/examples/comparisons/metaflow/main.py +++ b/examples/comparisons/metaflow/main.py @@ -46,7 +46,11 @@ def train(model, train_loader, optimizer, epoch): optimizer.step() if idx * len(data) % 10000 == 0: out = "Train Epoch: " + "{} [{}/{} ({:.0f}%)]\tLoss: {:.6f}".format( - epoch, idx * len(data), len(train_loader.dataset), 100.0 * idx / len(train_loader), loss.item() + epoch, + idx * len(data), + len(train_loader.dataset), + 100.0 * idx / len(train_loader), + loss.item(), ) print(out) @@ -65,9 +69,13 @@ def test(model, test_loader): def get_data_loaders(name="train"): - transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.1307,), (0.3081,))]) + transform = transforms.Compose( + [transforms.ToTensor(), transforms.Normalize((0.1307,), (0.3081,))] + ) if name == "train": - dataset = datasets.MNIST("../data", train=True, download=True, transform=transform) + dataset = datasets.MNIST( + "../data", train=True, download=True, transform=transform + ) train_args = {"batch_size": 32} return dataset, train_args elif name == "test": diff --git a/examples/comparisons/runnable/main.py b/examples/comparisons/runnable/main.py index 3b9d9c36..d03772a7 100644 --- a/examples/comparisons/runnable/main.py +++ b/examples/comparisons/runnable/main.py @@ -42,7 +42,6 @@ 4 directories, 28 files """ - from __future__ import print_function # import argparse @@ -152,22 +151,31 @@ def test(model, device, test_loader): for data, target in test_loader: data, target = data.to(device), target.to(device) output = model(data) - test_loss += F.nll_loss(output, target, reduction="sum").item() # sum up batch loss - pred = output.argmax(dim=1, keepdim=True) # get the index of the max log-probability + test_loss += F.nll_loss( + output, target, reduction="sum" + ).item() # sum up batch loss + pred = output.argmax( + dim=1, keepdim=True + ) # get the index of the max log-probability correct += pred.eq(target.view_as(pred)).sum().item() test_loss /= len(test_loader.dataset) print( "\nTest set: Average loss: {:.4f}, Accuracy: {}/{} ({:.0f}%)\n".format( - test_loss, correct, len(test_loader.dataset), 100.0 * correct / len(test_loader.dataset) + test_loss, + correct, + len(test_loader.dataset), + 100.0 * correct / len(test_loader.dataset), ) ) # A function to prepare the dataset. def prepare_dataset(train_batch_size: Dict[str, Any], test_batch_size: Dict[str, Any]): - transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.1307,), (0.3081,))]) + transform = transforms.Compose( + [transforms.ToTensor(), transforms.Normalize((0.1307,), (0.3081,))] + ) dataset1 = datasets.MNIST("data", train=True, download=True, transform=transform) dataset2 = datasets.MNIST("data", train=False, transform=transform) train_loader = torch.utils.data.DataLoader(dataset1, **train_batch_size) diff --git a/examples/comparisons/source.py b/examples/comparisons/source.py index 10c7daed..c0f46503 100644 --- a/examples/comparisons/source.py +++ b/examples/comparisons/source.py @@ -68,15 +68,22 @@ def test(model, device, test_loader): for data, target in test_loader: data, target = data.to(device), target.to(device) output = model(data) - test_loss += F.nll_loss(output, target, reduction="sum").item() # sum up batch loss - pred = output.argmax(dim=1, keepdim=True) # get the index of the max log-probability + test_loss += F.nll_loss( + output, target, reduction="sum" + ).item() # sum up batch loss + pred = output.argmax( + dim=1, keepdim=True + ) # get the index of the max log-probability correct += pred.eq(target.view_as(pred)).sum().item() test_loss /= len(test_loader.dataset) print( "\nTest set: Average loss: {:.4f}, Accuracy: {}/{} ({:.0f}%)\n".format( - test_loss, correct, len(test_loader.dataset), 100.0 * correct / len(test_loader.dataset) + test_loss, + correct, + len(test_loader.dataset), + 100.0 * correct / len(test_loader.dataset), ) ) @@ -85,18 +92,58 @@ def main(): # Training settings parser = argparse.ArgumentParser(description="PyTorch MNIST Example") parser.add_argument( - "--batch-size", type=int, default=64, metavar="N", help="input batch size for training (default: 64)" + "--batch-size", + type=int, + default=64, + metavar="N", + help="input batch size for training (default: 64)", + ) + parser.add_argument( + "--test-batch-size", + type=int, + default=1000, + metavar="N", + help="input batch size for testing (default: 1000)", + ) + parser.add_argument( + "--epochs", + type=int, + default=14, + metavar="N", + help="number of epochs to train (default: 14)", + ) + parser.add_argument( + "--lr", + type=float, + default=1.0, + metavar="LR", + help="learning rate (default: 1.0)", ) parser.add_argument( - "--test-batch-size", type=int, default=1000, metavar="N", help="input batch size for testing (default: 1000)" + "--gamma", + type=float, + default=0.7, + metavar="M", + help="Learning rate step gamma (default: 0.7)", + ) + parser.add_argument( + "--no-cuda", action="store_true", default=False, help="disables CUDA training" + ) + parser.add_argument( + "--no-mps", + action="store_true", + default=False, + help="disables macOS GPU training", + ) + parser.add_argument( + "--dry-run", + action="store_true", + default=False, + help="quickly check a single pass", + ) + parser.add_argument( + "--seed", type=int, default=1, metavar="S", help="random seed (default: 1)" ) - parser.add_argument("--epochs", type=int, default=14, metavar="N", help="number of epochs to train (default: 14)") - parser.add_argument("--lr", type=float, default=1.0, metavar="LR", help="learning rate (default: 1.0)") - parser.add_argument("--gamma", type=float, default=0.7, metavar="M", help="Learning rate step gamma (default: 0.7)") - parser.add_argument("--no-cuda", action="store_true", default=False, help="disables CUDA training") - parser.add_argument("--no-mps", action="store_true", default=False, help="disables macOS GPU training") - parser.add_argument("--dry-run", action="store_true", default=False, help="quickly check a single pass") - parser.add_argument("--seed", type=int, default=1, metavar="S", help="random seed (default: 1)") parser.add_argument( "--log-interval", type=int, @@ -104,7 +151,12 @@ def main(): metavar="N", help="how many batches to wait before logging training status", ) - parser.add_argument("--save-model", action="store_true", default=False, help="For Saving the current Model") + parser.add_argument( + "--save-model", + action="store_true", + default=False, + help="For Saving the current Model", + ) args = parser.parse_args() use_cuda = not args.no_cuda and torch.cuda.is_available() use_mps = not args.no_mps and torch.backends.mps.is_available() @@ -125,7 +177,9 @@ def main(): train_kwargs.update(cuda_kwargs) test_kwargs.update(cuda_kwargs) - transform = transforms.Compose([transforms.ToTensor(), transforms.Normalize((0.1307,), (0.3081,))]) + transform = transforms.Compose( + [transforms.ToTensor(), transforms.Normalize((0.1307,), (0.3081,))] + ) dataset1 = datasets.MNIST("../data", train=True, download=True, transform=transform) dataset2 = datasets.MNIST("../data", train=False, transform=transform) train_loader = torch.utils.data.DataLoader(dataset1, **train_kwargs) diff --git a/examples/tutorials/mnist/baseline_comparison.py b/examples/tutorials/mnist/baseline_comparison.py index 02ade587..5b317b61 100644 --- a/examples/tutorials/mnist/baseline_comparison.py +++ b/examples/tutorials/mnist/baseline_comparison.py @@ -71,9 +71,15 @@ def build_model(train_params: TrainParams, num_classes: int): model = keras.Sequential( [ keras.Input(shape=train_params.input_shape), - layers.Conv2D(32, train_params.kernel_size, activation=train_params.conv_activation), + layers.Conv2D( + 32, train_params.kernel_size, activation=train_params.conv_activation + ), layers.MaxPooling2D(pool_size=train_params.pool_size), - layers.Conv2D(64, kernel_size=train_params.kernel_size, activation=train_params.conv_activation), + layers.Conv2D( + 64, + kernel_size=train_params.kernel_size, + activation=train_params.conv_activation, + ), layers.MaxPooling2D(pool_size=train_params.pool_size), layers.Flatten(), layers.Dropout(0.5), @@ -106,7 +112,11 @@ def build_baseline_model(baseline_params: BaseLineParams, num_classes: int): ) ) - model.compile(loss=baseline_params.loss, optimizer=baseline_params.optimizer, metrics=baseline_params.metrics) + model.compile( + loss=baseline_params.loss, + optimizer=baseline_params.optimizer, + metrics=baseline_params.metrics, + ) print(model.summary()) model.save("baseline_model.keras") @@ -116,7 +126,11 @@ def train_model(x_train: np.ndarray, y_train: np.ndarray, train_params: TrainPar import keras model = keras.models.load_model("model.keras") - model.compile(loss=train_params.loss, optimizer=train_params.optimizer, metrics=train_params.metrics) + model.compile( + loss=train_params.loss, + optimizer=train_params.optimizer, + metrics=train_params.metrics, + ) model.fit( x_train, @@ -129,13 +143,21 @@ def train_model(x_train: np.ndarray, y_train: np.ndarray, train_params: TrainPar model.save("trained_model.keras") -def train_baseline_model(x_train: np.ndarray, y_train: np.ndarray, train_params: BaseLineParams): +def train_baseline_model( + x_train: np.ndarray, y_train: np.ndarray, train_params: BaseLineParams +): import keras model = keras.models.load_model("baseline_model.keras") - model.compile(loss=train_params.loss, optimizer=train_params.optimizer, metrics=train_params.metrics) + model.compile( + loss=train_params.loss, + optimizer=train_params.optimizer, + metrics=train_params.metrics, + ) - _x_train = x_train.reshape(x_train.shape[0], train_params.num_pixels).astype("float32") + _x_train = x_train.reshape(x_train.shape[0], train_params.num_pixels).astype( + "float32" + ) # _y_train = y_train.reshape(y_train.shape[0], train_params.num_pixels).astype("float32") model.fit( @@ -161,7 +183,9 @@ def evaluate_model(x_test: np.ndarray, y_test: np.ndarray): return score -def evaluate_baseline_model(x_test: np.ndarray, y_test: np.ndarray, train_params: BaseLineParams): +def evaluate_baseline_model( + x_test: np.ndarray, y_test: np.ndarray, train_params: BaseLineParams +): import keras trained_model = keras.models.load_model("trained_baseline_model.keras") @@ -182,7 +206,12 @@ def main(): load_data_task = PythonTask( function=load_data, name="load_data", - returns=[pickled("x_train"), pickled("y_train"), pickled("x_test"), pickled("y_test")], + returns=[ + pickled("x_train"), + pickled("y_train"), + pickled("x_test"), + pickled("y_test"), + ], ) # def scale_data(x_train: np.ndarray, x_test: np.ndarray) @@ -248,9 +277,15 @@ def main(): terminate_with_success=True, ) - train_pipeline = Pipeline(steps=[build_model_task, train_model_task, evaluate_model_task]) + train_pipeline = Pipeline( + steps=[build_model_task, train_model_task, evaluate_model_task] + ) baseline_train = Pipeline( - steps=[build_baseline_model_task, train_baseline_model_task, evaluate_baseline_model_task] + steps=[ + build_baseline_model_task, + train_baseline_model_task, + evaluate_baseline_model_task, + ] ) parallel_step = Parallel( diff --git a/examples/tutorials/mnist/hyper_parameter_tuning.py b/examples/tutorials/mnist/hyper_parameter_tuning.py index 8e149453..40ccb3b8 100644 --- a/examples/tutorials/mnist/hyper_parameter_tuning.py +++ b/examples/tutorials/mnist/hyper_parameter_tuning.py @@ -47,7 +47,9 @@ def convert_to_categorically(y_train: np.ndarray, y_test: np.ndarray, num_classe return y_train, y_test -def build_model(train_params: TrainParams, hpt_id: int, hpt: List[List[int]], num_classes: int): +def build_model( + train_params: TrainParams, hpt_id: int, hpt: List[List[int]], num_classes: int +): hp = hpt[hpt_id] hp_id = "_".join(map(str, hp)) print(hp_id) @@ -75,18 +77,32 @@ def build_model(train_params: TrainParams, hpt_id: int, hpt: List[List[int]], nu ) model = keras.Sequential(_layers) - model.compile(loss=train_params.loss, optimizer=train_params.optimizer, metrics=train_params.metrics) + model.compile( + loss=train_params.loss, + optimizer=train_params.optimizer, + metrics=train_params.metrics, + ) print(model.summary()) model.save(f"model{hp_id}.keras") -def train_model(x_train: np.ndarray, y_train: np.ndarray, hpt_id: int, train_params: TrainParams, hpt: List[List[int]]): +def train_model( + x_train: np.ndarray, + y_train: np.ndarray, + hpt_id: int, + train_params: TrainParams, + hpt: List[List[int]], +): hp = hpt[hpt_id] hp_id = "_".join(map(str, hp)) model = keras.models.load_model(f"model{hp_id}.keras") - model.compile(loss=train_params.loss, optimizer=train_params.optimizer, metrics=train_params.metrics) + model.compile( + loss=train_params.loss, + optimizer=train_params.optimizer, + metrics=train_params.metrics, + ) model.fit( x_train, @@ -99,7 +115,9 @@ def train_model(x_train: np.ndarray, y_train: np.ndarray, hpt_id: int, train_par model.save(f"trained_model{hp_id}.keras") -def evaluate_model(x_test: np.ndarray, y_test: np.ndarray, hpt: List[List[int]], hpt_id: int): +def evaluate_model( + x_test: np.ndarray, y_test: np.ndarray, hpt: List[List[int]], hpt_id: int +): hp = hpt[hpt_id] hp_id = "_".join(map(str, hp)) trained_model = keras.models.load_model(f"trained_model{hp_id}.keras") @@ -118,7 +136,12 @@ def main(): load_data_task = PythonTask( function=load_data, name="load_data", - returns=[pickled("x_train"), pickled("y_train"), pickled("x_test"), pickled("y_test")], + returns=[ + pickled("x_train"), + pickled("y_train"), + pickled("x_test"), + pickled("y_test"), + ], ) # def scale_data(x_train: np.ndarray, x_test: np.ndarray) @@ -159,7 +182,9 @@ def main(): terminate_with_success=True, ) - train_pipeline = Pipeline(steps=[build_model_task, train_model_task, evaluate_model_task]) + train_pipeline = Pipeline( + steps=[build_model_task, train_model_task, evaluate_model_task] + ) hpt_step = Map( name="hpt", @@ -170,7 +195,9 @@ def main(): terminate_with_success=True, ) - pipeline = Pipeline(steps=[load_data_task, scale_data_task, convert_to_categorically_task, hpt_step]) + pipeline = Pipeline( + steps=[load_data_task, scale_data_task, convert_to_categorically_task, hpt_step] + ) pipeline.execute(parameters_file="examples/tutorials/mnist/parameters.yaml") diff --git a/examples/tutorials/mnist/modular_source.py b/examples/tutorials/mnist/modular_source.py index 8411de67..7c1f705b 100644 --- a/examples/tutorials/mnist/modular_source.py +++ b/examples/tutorials/mnist/modular_source.py @@ -1,4 +1,3 @@ -import time from typing import List import numpy as np @@ -106,7 +105,12 @@ def main(): load_data_task = PythonTask( function=load_data, name="load_data", - returns=[pickled("x_train"), pickled("y_train"), pickled("x_test"), pickled("y_test")], + returns=[ + pickled("x_train"), + pickled("y_train"), + pickled("x_test"), + pickled("y_test"), + ], ) # def scale_data(x_train: np.ndarray, x_test: np.ndarray) diff --git a/examples/tutorials/mnist/parameters_source.py b/examples/tutorials/mnist/parameters_source.py index 10a71b12..ed63c35c 100644 --- a/examples/tutorials/mnist/parameters_source.py +++ b/examples/tutorials/mnist/parameters_source.py @@ -51,9 +51,15 @@ def build_model(train_params: TrainParams, num_classes: int): model = keras.Sequential( [ keras.Input(shape=train_params.input_shape), - layers.Conv2D(32, train_params.kernel_size, activation=train_params.conv_activation), + layers.Conv2D( + 32, train_params.kernel_size, activation=train_params.conv_activation + ), layers.MaxPooling2D(pool_size=train_params.pool_size), - layers.Conv2D(64, kernel_size=train_params.kernel_size, activation=train_params.conv_activation), + layers.Conv2D( + 64, + kernel_size=train_params.kernel_size, + activation=train_params.conv_activation, + ), layers.MaxPooling2D(pool_size=train_params.pool_size), layers.Flatten(), layers.Dropout(0.5), @@ -68,7 +74,11 @@ def build_model(train_params: TrainParams, num_classes: int): def train_model(x_train: np.ndarray, y_train: np.ndarray, train_params: TrainParams): model = keras.models.load_model("model.keras") - model.compile(loss=train_params.loss, optimizer=train_params.optimizer, metrics=train_params.metrics) + model.compile( + loss=train_params.loss, + optimizer=train_params.optimizer, + metrics=train_params.metrics, + ) model.fit( x_train, @@ -98,7 +108,12 @@ def main(): load_data_task = PythonTask( function=load_data, name="load_data", - returns=[pickled("x_train"), pickled("y_train"), pickled("x_test"), pickled("y_test")], + returns=[ + pickled("x_train"), + pickled("y_train"), + pickled("x_test"), + pickled("y_test"), + ], ) # def scale_data(x_train: np.ndarray, x_test: np.ndarray) diff --git a/examples/tutorials/reddit_text_classification/pipeline.py b/examples/tutorials/reddit_text_classification/pipeline.py index 50b57786..244cff7f 100644 --- a/examples/tutorials/reddit_text_classification/pipeline.py +++ b/examples/tutorials/reddit_text_classification/pipeline.py @@ -5,7 +5,7 @@ tfidf, tokenize, ) -from runnable import Pipeline, PythonTask, Stub, pickled +from runnable import Pipeline, Stub, pickled def driver(): @@ -25,10 +25,16 @@ def driver(): def runnable_pipeline(): - extract_task = Stub(name="extract", function=extract_text, returns=[pickled("x"), pickled("labels")]) + extract_task = Stub( + name="extract", function=extract_text, returns=[pickled("x"), pickled("labels")] + ) clean_task = Stub(name="clean", function=clean, returns=[pickled("cleaned_x")]) - tokenize_task = Stub(name="tokenize", function=tokenize, returns=[pickled("tokenised_x")]) - vectorise_task = Stub(name="tfidf", function=tfidf, returns=[pickled("vectorised_x")]) + tokenize_task = Stub( + name="tokenize", function=tokenize, returns=[pickled("tokenised_x")] + ) + vectorise_task = Stub( + name="tfidf", function=tfidf, returns=[pickled("vectorised_x")] + ) model_fit_task = Stub( name="model_fit", @@ -42,7 +48,9 @@ def runnable_pipeline(): add_terminal_nodes=True, ) - pipeline.execute(parameters_file="examples/tutorials/reddit_text_classification/parameters.yaml") + pipeline.execute( + parameters_file="examples/tutorials/reddit_text_classification/parameters.yaml" + ) return pipeline diff --git a/examples/tutorials/reddit_text_classification/steps.py b/examples/tutorials/reddit_text_classification/steps.py index 86806896..4affd46a 100644 --- a/examples/tutorials/reddit_text_classification/steps.py +++ b/examples/tutorials/reddit_text_classification/steps.py @@ -32,7 +32,7 @@ def fit(self, X, y=None, **fit_params): def transform_clean_text(raw_text): try: decoded = raw_text.encode("ISO-8859-1").decode("utf-8") - except: + except: # noqa: E722 decoded = raw_text.encode("ISO-8859-1").decode("cp1252") html_unescaped = unescape(decoded) html_unescaped = re.sub(r"\r\n", " ", html_unescaped) @@ -41,8 +41,12 @@ def transform_clean_text(raw_text): html_unescaped = html_unescaped.replace(">", " > ") html_unescaped = html_unescaped.replace("<", " < ") html_unescaped = html_unescaped.replace("--", " - ") - html_unescaped = CleanTransformer.__uplus_pattern.sub(" U\g ", html_unescaped) - html_unescaped = CleanTransformer.__markup_link_pattern.sub(" \1 \2 ", html_unescaped) + html_unescaped = CleanTransformer.__uplus_pattern.sub( + " U\g ", html_unescaped + ) + html_unescaped = CleanTransformer.__markup_link_pattern.sub( + " \1 \2 ", html_unescaped + ) html_unescaped = html_unescaped.replace("\\", "") return html_unescaped diff --git a/runnable/extensions/__init__.py b/extensions/README.md similarity index 100% rename from runnable/extensions/__init__.py rename to extensions/README.md diff --git a/runnable/extensions/catalog/file_system/__init__.py b/extensions/__init__.py similarity index 100% rename from runnable/extensions/catalog/file_system/__init__.py rename to extensions/__init__.py diff --git a/runnable/extensions/catalog/file_system/implementation.py b/extensions/catalog/file_system.py similarity index 86% rename from runnable/extensions/catalog/file_system/implementation.py rename to extensions/catalog/file_system.py index b584936c..901ea086 100644 --- a/runnable/extensions/catalog/file_system/implementation.py +++ b/extensions/catalog/file_system.py @@ -5,9 +5,8 @@ from typing import Any, Dict, List, Optional from runnable import defaults, utils -from runnable.catalog import BaseCatalog +from runnable.catalog import BaseCatalog, is_catalog_out_of_sync from runnable.datastore import DataCatalog -from runnable.extensions.catalog import is_catalog_out_of_sync logger = logging.getLogger(defaults.LOGGER_NAME) @@ -41,7 +40,9 @@ def get_summary(self) -> Dict[str, Any]: return summary - def get(self, name: str, run_id: str, compute_data_folder: str = "", **kwargs) -> List[DataCatalog]: + def get( + self, name: str, run_id: str, compute_data_folder: str = "", **kwargs + ) -> List[DataCatalog]: """ Get the file by matching glob pattern to the name @@ -55,7 +56,9 @@ def get(self, name: str, run_id: str, compute_data_folder: str = "", **kwargs) - Returns: List(object) : A list of catalog objects """ - logger.info(f"Using the {self.service_name} catalog and trying to get {name} for run_id: {run_id}") + logger.info( + f"Using the {self.service_name} catalog and trying to get {name} for run_id: {run_id}" + ) copy_to = self.compute_data_folder if compute_data_folder: @@ -66,7 +69,9 @@ def get(self, name: str, run_id: str, compute_data_folder: str = "", **kwargs) - catalog_location = self.get_catalog_location() run_catalog = Path(catalog_location) / run_id / copy_to - logger.debug(f"Copying objects to {copy_to} from the run catalog location of {run_catalog}") + logger.debug( + f"Copying objects to {copy_to} from the run catalog location of {run_catalog}" + ) if not utils.does_dir_exist(run_catalog): msg = ( @@ -78,7 +83,9 @@ def get(self, name: str, run_id: str, compute_data_folder: str = "", **kwargs) - # Iterate through the contents of the run_catalog and copy the files that fit the name pattern # We should also return a list of data hashes glob_files = run_catalog.glob(name) - logger.debug(f"Glob identified {glob_files} as matches to from the catalog location: {run_catalog}") + logger.debug( + f"Glob identified {glob_files} as matches to from the catalog location: {run_catalog}" + ) data_catalogs = [] run_log_store = self._context.run_log_store @@ -135,7 +142,9 @@ def put( Returns: List(object) : A list of catalog objects """ - logger.info(f"Using the {self.service_name} catalog and trying to put {name} for run_id: {run_id}") + logger.info( + f"Using the {self.service_name} catalog and trying to put {name} for run_id: {run_id}" + ) copy_from = self.compute_data_folder if compute_data_folder: @@ -146,7 +155,9 @@ def put( run_catalog = Path(catalog_location) / run_id utils.safe_make_dir(run_catalog) - logger.debug(f"Copying objects from {copy_from} to the run catalog location of {run_catalog}") + logger.debug( + f"Copying objects from {copy_from} to the run catalog location of {run_catalog}" + ) if not utils.does_dir_exist(copy_from): msg = ( @@ -160,7 +171,9 @@ def put( # We should also return a list of datastore.DataCatalog items glob_files = copy_from.glob(name) # type: ignore - logger.debug(f"Glob identified {glob_files} as matches to from the compute data folder: {copy_from}") + logger.debug( + f"Glob identified {glob_files} as matches to from the compute data folder: {copy_from}" + ) data_catalogs = [] run_log_store = self._context.run_log_store @@ -173,7 +186,9 @@ def put( data_catalog = run_log_store.create_data_catalog(str(relative_file_path)) data_catalog.catalog_handler_location = catalog_location - data_catalog.catalog_relative_path = run_id + os.sep + str(relative_file_path) + data_catalog.catalog_relative_path = ( + run_id + os.sep + str(relative_file_path) + ) data_catalog.data_hash = utils.get_data_hash(str(file)) data_catalog.stage = "put" data_catalogs.append(data_catalog) @@ -182,10 +197,14 @@ def put( logger.info(f"{data_catalog.name} was found to be changed, syncing") # Make the directory in the catalog if required - Path(run_catalog / relative_file_path.parent).mkdir(parents=True, exist_ok=True) + Path(run_catalog / relative_file_path.parent).mkdir( + parents=True, exist_ok=True + ) shutil.copy(file, run_catalog / relative_file_path) else: - logger.info(f"{data_catalog.name} was found to be unchanged, ignoring syncing") + logger.info( + f"{data_catalog.name} was found to be unchanged, ignoring syncing" + ) if not data_catalogs: raise Exception(f"Did not find any files matching {name} in {copy_from}") diff --git a/extensions/catalog/pyproject.toml b/extensions/catalog/pyproject.toml new file mode 100644 index 00000000..a829d229 --- /dev/null +++ b/extensions/catalog/pyproject.toml @@ -0,0 +1,7 @@ +[project] +name = "catalog" +version = "0.1.0" +description = "Add your description here" +readme = "README.md" +requires-python = ">=3.9" +dependencies = [] diff --git a/runnable/extensions/executor/__init__.py b/extensions/executor/__init__.py similarity index 88% rename from runnable/extensions/executor/__init__.py rename to extensions/executor/__init__.py index a696dc4f..8683af68 100644 --- a/runnable/extensions/executor/__init__.py +++ b/extensions/executor/__init__.py @@ -4,6 +4,7 @@ from abc import abstractmethod from typing import Dict, List, Optional, cast +from extensions.nodes.nodes import TaskNode from runnable import ( console, context, @@ -17,7 +18,6 @@ from runnable.datastore import DataCatalog, JsonParameter, RunLog, StepLog from runnable.defaults import TypeMapVariable from runnable.executor import BaseExecutor -from runnable.extensions.nodes import TaskNode from runnable.graph import Graph from runnable.nodes import BaseNode @@ -74,9 +74,13 @@ def _set_up_run_log(self, exists_ok=False): If exists_ok, we allow the run log to be already present in the run log store. """ try: - attempt_run_log = self._context.run_log_store.get_run_log_by_id(run_id=self._context.run_id, full=False) + attempt_run_log = self._context.run_log_store.get_run_log_by_id( + run_id=self._context.run_id, full=False + ) - logger.warning(f"The run log by id: {self._context.run_id} already exists, is this designed?") + logger.warning( + f"The run log by id: {self._context.run_id} already exists, is this designed?" + ) raise exceptions.RunLogExistsError( f"The run log by id: {self._context.run_id} already exists and is {attempt_run_log.status}" ) @@ -97,12 +101,16 @@ def _set_up_run_log(self, exists_ok=False): dag_hash=self._context.dag_hash, ) # Any interaction with run log store attributes should happen via API if available. - self._context.run_log_store.set_parameters(run_id=self._context.run_id, parameters=params) + self._context.run_log_store.set_parameters( + run_id=self._context.run_id, parameters=params + ) # Update run_config run_config = utils.get_run_config() logger.debug(f"run_config as seen by executor: {run_config}") - self._context.run_log_store.set_run_config(run_id=self._context.run_id, run_config=run_config) + self._context.run_log_store.set_run_config( + run_id=self._context.run_id, run_config=run_config + ) def prepare_for_graph_execution(self): """ @@ -143,7 +151,9 @@ def prepare_for_node_execution(self): integration.validate(self, self._context.secrets_handler) integration.configure_for_execution(self, self._context.secrets_handler) - def _sync_catalog(self, stage: str, synced_catalogs=None) -> Optional[List[DataCatalog]]: + def _sync_catalog( + self, stage: str, synced_catalogs=None + ) -> Optional[List[DataCatalog]]: """ 1). Identify the catalog settings by over-riding node settings with the global settings. 2). For stage = get: @@ -163,6 +173,7 @@ def _sync_catalog(self, stage: str, synced_catalogs=None) -> Optional[List[DataC Exception: If the stage is not in one of get/put """ + assert isinstance(self._context_node, BaseNode) if stage not in ["get", "put"]: msg = ( "Catalog service only accepts get/put possible actions as part of node execution." @@ -187,7 +198,9 @@ def _sync_catalog(self, stage: str, synced_catalogs=None) -> Optional[List[DataC for name_pattern in node_catalog_settings.get(stage) or []: if stage == "get": data_catalog = self._context.catalog_handler.get( - name=name_pattern, run_id=self._context.run_id, compute_data_folder=compute_data_folder + name=name_pattern, + run_id=self._context.run_id, + compute_data_folder=compute_data_folder, ) elif stage == "put": @@ -217,10 +230,13 @@ def get_effective_compute_data_folder(self) -> str: Returns: str: The compute data folder as defined by the node defaulting to catalog handler """ + assert isinstance(self._context_node, BaseNode) compute_data_folder = self._context.catalog_handler.compute_data_folder catalog_settings = self._context_node._get_catalog_settings() - effective_compute_data_folder = catalog_settings.get("compute_data_folder", "") or compute_data_folder + effective_compute_data_folder = ( + catalog_settings.get("compute_data_folder", "") or compute_data_folder + ) return effective_compute_data_folder @@ -235,7 +251,13 @@ def step_attempt_number(self) -> int: """ return int(os.environ.get(defaults.ATTEMPT_NUMBER, 1)) - def _execute_node(self, node: BaseNode, map_variable: TypeMapVariable = None, mock: bool = False, **kwargs): + def _execute_node( + self, + node: BaseNode, + map_variable: TypeMapVariable = None, + mock: bool = False, + **kwargs, + ): """ This is the entry point when we do the actual execution of the function. DO NOT Over-ride this function. @@ -255,7 +277,9 @@ def _execute_node(self, node: BaseNode, map_variable: TypeMapVariable = None, mo map_variable (dict, optional): If the node is of a map state, map_variable is the value of the iterable. Defaults to None. """ - logger.info(f"Trying to execute node: {node.internal_name}, attempt : {self.step_attempt_number}") + logger.info( + f"Trying to execute node: {node.internal_name}, attempt : {self.step_attempt_number}" + ) self._context_node = node @@ -278,7 +302,7 @@ def _execute_node(self, node: BaseNode, map_variable: TypeMapVariable = None, mo console.print(f"Summary of the step: {step_log.internal_name}") console.print(step_log.get_summary(), style=defaults.info_style) - self._context_node = None # type: ignore + self._context_node = None self._context.run_log_store.add_step_log(step_log, self._context.run_id) @@ -294,7 +318,9 @@ def add_code_identities(self, node: BaseNode, step_log: StepLog, **kwargs): """ step_log.code_identities.append(utils.get_git_code_identity()) - def execute_from_graph(self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs): + def execute_from_graph( + self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs + ): """ This is the entry point to from the graph execution. @@ -319,7 +345,9 @@ def execute_from_graph(self, node: BaseNode, map_variable: TypeMapVariable = Non map_variable (dict, optional): If the node if of a map state, this corresponds to the value of iterable. Defaults to None. """ - step_log = self._context.run_log_store.create_step_log(node.name, node._get_step_log_name(map_variable)) + step_log = self._context.run_log_store.create_step_log( + node.name, node._get_step_log_name(map_variable) + ) self.add_code_identities(node=node, step_log=step_log) @@ -344,16 +372,22 @@ def execute_from_graph(self, node: BaseNode, map_variable: TypeMapVariable = Non task_console.export_text(clear=True) task_name = node._resolve_map_placeholders(node.internal_name, map_variable) - console.print(f":runner: Executing the node {task_name} ... ", style="bold color(208)") + console.print( + f":runner: Executing the node {task_name} ... ", style="bold color(208)" + ) self.trigger_job(node=node, map_variable=map_variable, **kwargs) log_file_name = utils.make_log_file_name(node=node, map_variable=map_variable) task_console.save_text(log_file_name, clear=True) - self._context.catalog_handler.put(name=log_file_name, run_id=self._context.run_id) + self._context.catalog_handler.put( + name=log_file_name, run_id=self._context.run_id + ) os.remove(log_file_name) - def trigger_job(self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs): + def trigger_job( + self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs + ): """ Call this method only if we are responsible for traversing the graph via execute_from_graph(). @@ -369,7 +403,9 @@ def trigger_job(self, node: BaseNode, map_variable: TypeMapVariable = None, **kw """ pass - def _get_status_and_next_node_name(self, current_node: BaseNode, dag: Graph, map_variable: TypeMapVariable = None): + def _get_status_and_next_node_name( + self, current_node: BaseNode, dag: Graph, map_variable: TypeMapVariable = None + ): """ Given the current node and the graph, returns the name of the next node to execute. @@ -390,7 +426,9 @@ def _get_status_and_next_node_name(self, current_node: BaseNode, dag: Graph, map step_log = self._context.run_log_store.get_step_log( current_node._get_step_log_name(map_variable), self._context.run_id ) - logger.info(f"Finished executing the node {current_node} with status {step_log.status}") + logger.info( + f"Finished executing the node {current_node} with status {step_log.status}" + ) try: next_node_name = current_node._get_next_node() @@ -440,7 +478,9 @@ def execute_graph(self, dag: Graph, map_variable: TypeMapVariable = None, **kwar while True: working_on = dag.get_node_by_name(current_node) - task_name = working_on._resolve_map_placeholders(working_on.internal_name, map_variable) + task_name = working_on._resolve_map_placeholders( + working_on.internal_name, map_variable + ) if previous_node == current_node: raise Exception("Potentially running in a infinite loop") @@ -451,7 +491,9 @@ def execute_graph(self, dag: Graph, map_variable: TypeMapVariable = None, **kwar depth = " " * ((task_name.count(".")) or 1 - 1) - task_execution = self._context.progress.add_task(f"{depth}Executing {task_name}", total=1) + task_execution = self._context.progress.add_task( + f"{depth}Executing {task_name}", total=1 + ) try: self.execute_from_graph(working_on, map_variable=map_variable, **kwargs) @@ -468,7 +510,9 @@ def execute_graph(self, dag: Graph, map_variable: TypeMapVariable = None, **kwar ) else: self._context.progress.update( - task_execution, description=f"{depth}[red] {task_name} Failed", completed=True + task_execution, + description=f"{depth}[red] {task_name} Failed", + completed=True, ) # type ignore except Exception as e: # noqa: E722 self._context.progress.update( @@ -489,7 +533,9 @@ def execute_graph(self, dag: Graph, map_variable: TypeMapVariable = None, **kwar if branch_execution_task: self._context.progress.update( - branch_execution_task, description=f"[green3] {branch_task_name} completed", completed=True + branch_execution_task, + description=f"[green3] {branch_task_name} completed", + completed=True, ) run_log = self._context.run_log_store.get_branch_log( @@ -517,7 +563,9 @@ def send_return_code(self, stage="traversal"): """ run_id = self._context.run_id - run_log = self._context.run_log_store.get_run_log_by_id(run_id=run_id, full=False) + run_log = self._context.run_log_store.get_run_log_by_id( + run_id=run_id, full=False + ) if run_log.status == defaults.FAIL: raise exceptions.ExecutionFailedError(run_id=run_id) @@ -563,11 +611,15 @@ def _resolve_executor_config(self, node: BaseNode): if ctx_node_config: if ctx_node_config not in self.overrides: - raise Exception(f"No override of key: {ctx_node_config} found in the overrides section") + raise Exception( + f"No override of key: {ctx_node_config} found in the overrides section" + ) effective_node_config.update(self.overrides[ctx_node_config]) - effective_node_config = utils.apply_variables(effective_node_config, self._context.variables) + effective_node_config = utils.apply_variables( + effective_node_config, self._context.variables + ) logger.debug(f"Effective node config: {effective_node_config}") return effective_node_config diff --git a/runnable/extensions/executor/argo/implementation.py b/extensions/executor/argo.py similarity index 82% rename from runnable/extensions/executor/argo/implementation.py rename to extensions/executor/argo.py index 73b42836..73a4acf8 100644 --- a/runnable/extensions/executor/argo/implementation.py +++ b/extensions/executor/argo.py @@ -19,10 +19,10 @@ from ruamel.yaml import YAML from typing_extensions import Annotated +from extensions.executor import GenericExecutor +from extensions.nodes.nodes import DagNode, MapNode, ParallelNode from runnable import defaults, exceptions, integration, utils from runnable.defaults import TypeMapVariable -from runnable.extensions.executor import GenericExecutor -from runnable.extensions.nodes import DagNode, MapNode, ParallelNode from runnable.graph import Graph, create_node, search_node_by_internal_name from runnable.integration import BaseIntegration from runnable.nodes import BaseNode @@ -225,15 +225,21 @@ def timeout(self) -> str: return f"{self.max_step_duration + 60*60}s" -ShlexCommand = Annotated[str, PlainSerializer(lambda x: shlex.split(x), return_type=List[str])] +ShlexCommand = Annotated[ + str, PlainSerializer(lambda x: shlex.split(x), return_type=List[str]) +] class Container(BaseModel): image: str command: ShlexCommand - volume_mounts: Optional[List["ContainerVolume"]] = Field(default=None, serialization_alias="volumeMounts") + volume_mounts: Optional[List["ContainerVolume"]] = Field( + default=None, serialization_alias="volumeMounts" + ) image_pull_policy: str = Field(default="", serialization_alias="imagePullPolicy") - resources: Optional[Resources] = Field(default=None, serialization_alias="resources") + resources: Optional[Resources] = Field( + default=None, serialization_alias="resources" + ) env_vars: List[EnvVar] = Field(default_factory=list, exclude=True) secrets_from_k8s: List[SecretEnvVar] = Field(default_factory=list, exclude=True) @@ -268,28 +274,44 @@ def transform_depends_as_str(self, depends: List[str]) -> str: return " || ".join(depends) @field_serializer("arguments", when_used="unless-none") - def empty_arguments_to_none(self, arguments: List[Argument]) -> Dict[str, List[Argument]]: + def empty_arguments_to_none( + self, arguments: List[Argument] + ) -> Dict[str, List[Argument]]: return {"parameters": arguments} class ContainerTemplate(BaseModel): # These templates are used for actual execution nodes. name: str - active_deadline_seconds: Optional[int] = Field(default=None, serialization_alias="activeDeadlineSeconds", gt=0) - node_selector: Optional[Dict[str, str]] = Field(default=None, serialization_alias="nodeSelector") - retry_strategy: Optional[Retry] = Field(default=None, serialization_alias="retryStrategy") - tolerations: Optional[List[Toleration]] = Field(default=None, serialization_alias="tolerations") + active_deadline_seconds: Optional[int] = Field( + default=None, serialization_alias="activeDeadlineSeconds", gt=0 + ) + node_selector: Optional[Dict[str, str]] = Field( + default=None, serialization_alias="nodeSelector" + ) + retry_strategy: Optional[Retry] = Field( + default=None, serialization_alias="retryStrategy" + ) + tolerations: Optional[List[Toleration]] = Field( + default=None, serialization_alias="tolerations" + ) container: Container - outputs: Optional[List[OutputParameter]] = Field(default=None, serialization_alias="outputs") - inputs: Optional[List[Parameter]] = Field(default=None, serialization_alias="inputs") + outputs: Optional[List[OutputParameter]] = Field( + default=None, serialization_alias="outputs" + ) + inputs: Optional[List[Parameter]] = Field( + default=None, serialization_alias="inputs" + ) def __hash__(self): return hash(self.name) @field_serializer("outputs", when_used="unless-none") - def reshape_outputs(self, outputs: List[OutputParameter]) -> Dict[str, List[OutputParameter]]: + def reshape_outputs( + self, outputs: List[OutputParameter] + ) -> Dict[str, List[OutputParameter]]: return {"parameters": outputs} @field_serializer("inputs", when_used="unless-none") @@ -301,7 +323,9 @@ class DagTemplate(BaseModel): # These are used for parallel, map nodes dag definition name: str = "runnable-dag" tasks: List[DagTaskTemplate] = Field(default=[], exclude=True) - inputs: Optional[List[Parameter]] = Field(default=None, serialization_alias="inputs") + inputs: Optional[List[Parameter]] = Field( + default=None, serialization_alias="inputs" + ) parallelism: Optional[int] = None fail_fast: bool = Field(default=False, serialization_alias="failFast") @@ -318,7 +342,9 @@ def dag(self) -> Dict[str, List[DagTaskTemplate]]: return {"tasks": self.tasks} @field_serializer("inputs", when_used="unless-none") - def reshape_inputs(self, inputs: List[Parameter], _info) -> Dict[str, List[Parameter]]: + def reshape_inputs( + self, inputs: List[Parameter], _info + ) -> Dict[str, List[Parameter]]: return {"parameters": inputs} @@ -405,19 +431,25 @@ def render(self, list_of_iter_values: Optional[List] = None): dag_inputs = [] if list_of_iter_values: for value in list_of_iter_values: - task_template_arguments.append(Argument(name=value, value="{{inputs.parameters." + value + "}}")) + task_template_arguments.append( + Argument(name=value, value="{{inputs.parameters." + value + "}}") + ) dag_inputs.append(Parameter(name=value)) clean_name = self.executor.get_clean_name(self.node) fan_out_template = self.executor._create_fan_out_template( composite_node=self.node, list_of_iter_values=list_of_iter_values ) - fan_out_template.arguments = task_template_arguments if task_template_arguments else None + fan_out_template.arguments = ( + task_template_arguments if task_template_arguments else None + ) fan_in_template = self.executor._create_fan_in_template( composite_node=self.node, list_of_iter_values=list_of_iter_values ) - fan_in_template.arguments = task_template_arguments if task_template_arguments else None + fan_in_template.arguments = ( + task_template_arguments if task_template_arguments else None + ) self.executor._gather_task_templates_of_dag( self.node.branch, @@ -452,19 +484,25 @@ def render(self, list_of_iter_values: Optional[List] = None): dag_inputs = [] if list_of_iter_values: for value in list_of_iter_values: - task_template_arguments.append(Argument(name=value, value="{{inputs.parameters." + value + "}}")) + task_template_arguments.append( + Argument(name=value, value="{{inputs.parameters." + value + "}}") + ) dag_inputs.append(Parameter(name=value)) clean_name = self.executor.get_clean_name(self.node) fan_out_template = self.executor._create_fan_out_template( composite_node=self.node, list_of_iter_values=list_of_iter_values ) - fan_out_template.arguments = task_template_arguments if task_template_arguments else None + fan_out_template.arguments = ( + task_template_arguments if task_template_arguments else None + ) fan_in_template = self.executor._create_fan_in_template( composite_node=self.node, list_of_iter_values=list_of_iter_values ) - fan_in_template.arguments = task_template_arguments if task_template_arguments else None + fan_in_template.arguments = ( + task_template_arguments if task_template_arguments else None + ) branch_templates = [] for name, branch in self.node.branches.items(): @@ -508,7 +546,9 @@ def render(self, list_of_iter_values: Optional[List] = None): list_of_iter_values = [] for value in list_of_iter_values: - task_template_arguments.append(Argument(name=value, value="{{inputs.parameters." + value + "}}")) + task_template_arguments.append( + Argument(name=value, value="{{inputs.parameters." + value + "}}") + ) dag_inputs.append(Parameter(name=value)) clean_name = self.executor.get_clean_name(self.node) @@ -516,12 +556,16 @@ def render(self, list_of_iter_values: Optional[List] = None): fan_out_template = self.executor._create_fan_out_template( composite_node=self.node, list_of_iter_values=list_of_iter_values ) - fan_out_template.arguments = task_template_arguments if task_template_arguments else None + fan_out_template.arguments = ( + task_template_arguments if task_template_arguments else None + ) fan_in_template = self.executor._create_fan_in_template( composite_node=self.node, list_of_iter_values=list_of_iter_values ) - fan_in_template.arguments = task_template_arguments if task_template_arguments else None + fan_in_template.arguments = ( + task_template_arguments if task_template_arguments else None + ) list_of_iter_values.append(self.node.iterate_as) @@ -536,7 +580,13 @@ def render(self, list_of_iter_values: Optional[List] = None): template=f"{clean_name}-map", arguments=task_template_arguments if task_template_arguments else None, ) - task_template.with_param = "{{tasks." + f"{clean_name}-fan-out" + ".outputs.parameters." + "iterate-on" + "}}" + task_template.with_param = ( + "{{tasks." + + f"{clean_name}-fan-out" + + ".outputs.parameters." + + "iterate-on" + + "}}" + ) argument = Argument(name=self.node.iterate_as, value="{{item}}") if task_template.arguments is None: @@ -570,33 +620,47 @@ def get_renderer(node): class MetaData(BaseModel): - generate_name: str = Field(default="runnable-dag-", serialization_alias="generateName") - annotations: Optional[Dict[str, str]] = Field(default_factory=dict) - labels: Optional[Dict[str, str]] = Field(default_factory=dict) + generate_name: str = Field( + default="runnable-dag-", serialization_alias="generateName" + ) + # The type ignore is related to: https://github.com/python/mypy/issues/18191 + annotations: Optional[Dict[str, str]] = Field(default_factory=dict) # type: ignore + labels: Optional[Dict[str, str]] = Field(default_factory=dict) # type: ignore namespace: Optional[str] = Field(default=None) class Spec(BaseModel): active_deadline_seconds: int = Field(serialization_alias="activeDeadlineSeconds") entrypoint: str = Field(default="runnable-dag") - node_selector: Optional[Dict[str, str]] = Field(default_factory=dict, serialization_alias="nodeSelector") - tolerations: Optional[List[Toleration]] = Field(default=None, serialization_alias="tolerations") + node_selector: Optional[Dict[str, str]] = Field( + default_factory=dict, # type: ignore + serialization_alias="nodeSelector", + ) + tolerations: Optional[List[Toleration]] = Field( + default=None, serialization_alias="tolerations" + ) parallelism: Optional[int] = Field(default=None, serialization_alias="parallelism") # TODO: This has to be user driven - pod_gc: Dict[str, str] = Field( + pod_gc: Dict[str, str] = Field( # type ignore default={"strategy": "OnPodSuccess", "deleteDelayDuration": "600s"}, serialization_alias="podGC", ) retry_strategy: Retry = Field(default=Retry(), serialization_alias="retryStrategy") - service_account_name: Optional[str] = Field(default=None, serialization_alias="serviceAccountName") + service_account_name: Optional[str] = Field( + default=None, serialization_alias="serviceAccountName" + ) templates: List[Union[DagTemplate, ContainerTemplate]] = Field(default_factory=list) - template_defaults: Optional[TemplateDefaults] = Field(default=None, serialization_alias="templateDefaults") + template_defaults: Optional[TemplateDefaults] = Field( + default=None, serialization_alias="templateDefaults" + ) - arguments: Optional[List[EnvVar]] = Field(default_factory=list) - persistent_volumes: List[UserVolumeMounts] = Field(default_factory=list, exclude=True) + arguments: Optional[List[EnvVar]] = Field(default_factory=list) # type: ignore + persistent_volumes: List[UserVolumeMounts] = Field( + default_factory=list, exclude=True + ) @field_validator("parallelism") @classmethod @@ -615,12 +679,18 @@ def volumes(self) -> List[Volume]: raise Exception(f"Duplicate claim name {user_volume.name}") claim_names[user_volume.name] = user_volume.name - volume = Volume(name=f"executor-{i}", claim=user_volume.name, mount_path=user_volume.mount_path) + volume = Volume( + name=f"executor-{i}", + claim=user_volume.name, + mount_path=user_volume.mount_path, + ) volumes.append(volume) return volumes @field_serializer("arguments", when_used="unless-none") - def reshape_arguments(self, arguments: List[EnvVar], _info) -> Dict[str, List[EnvVar]]: + def reshape_arguments( + self, arguments: List[EnvVar], _info + ) -> Dict[str, List[EnvVar]]: return {"parameters": arguments} @@ -690,7 +760,9 @@ class ArgoExecutor(GenericExecutor): output_file: str = "argo-pipeline.yaml" # Metadata related fields - name: str = Field(default="runnable-dag-", description="Used as an identifier for the workflow") + name: str = Field( + default="runnable-dag-", description="Used as an identifier for the workflow" + ) annotations: Dict[str, str] = Field(default_factory=dict) labels: Dict[str, str] = Field(default_factory=dict) @@ -746,7 +818,9 @@ def step_timeout(self) -> int: """ Maximum time the step can take to complete, including the pending state. """ - return self.max_step_duration_in_seconds + 2 * 60 * 60 # 2 hours + max_step_duration_in_seconds + return ( + self.max_step_duration_in_seconds + 2 * 60 * 60 + ) # 2 hours + max_step_duration_in_seconds @property def metadata(self) -> MetaData: @@ -766,7 +840,9 @@ def spec(self) -> Spec: retry_strategy=self.retry_strategy, service_account_name=self.service_account_name, persistent_volumes=self.persistent_volumes, - template_defaults=TemplateDefaults(max_step_duration=self.max_step_duration_in_seconds), + template_defaults=TemplateDefaults( + max_step_duration=self.max_step_duration_in_seconds + ), ) def prepare_for_graph_execution(self): @@ -801,8 +877,12 @@ def prepare_for_node_execution(self): super().prepare_for_node_execution() self._set_up_run_log(exists_ok=True) - def execute_node(self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs): - step_log = self._context.run_log_store.create_step_log(node.name, node._get_step_log_name(map_variable)) + def execute_node( + self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs + ): + step_log = self._context.run_log_store.create_step_log( + node.name, node._get_step_log_name(map_variable) + ) self.add_code_identities(node=node, step_log=step_log) @@ -815,8 +895,12 @@ def execute_node(self, node: BaseNode, map_variable: TypeMapVariable = None, **k # Implicit fail if self._context.dag: # functions and notebooks do not have dags - _, current_branch = search_node_by_internal_name(dag=self._context.dag, internal_name=node.internal_name) - _, next_node_name = self._get_status_and_next_node_name(node, current_branch, map_variable=map_variable) + _, current_branch = search_node_by_internal_name( + dag=self._context.dag, internal_name=node.internal_name + ) + _, next_node_name = self._get_status_and_next_node_name( + node, current_branch, map_variable=map_variable + ) if next_node_name: # Terminal nodes do not have next node name next_node = current_branch.get_node_by_name(next_node_name) @@ -824,7 +908,9 @@ def execute_node(self, node: BaseNode, map_variable: TypeMapVariable = None, **k if next_node.node_type == defaults.FAIL: self.execute_node(next_node, map_variable=map_variable) - step_log = self._context.run_log_store.get_step_log(node._get_step_log_name(map_variable), self._context.run_id) + step_log = self._context.run_log_store.get_step_log( + node._get_step_log_name(map_variable), self._context.run_id + ) if step_log.status == defaults.FAIL: raise Exception(f"Step {node.name} failed") @@ -834,7 +920,9 @@ def fan_out(self, node: BaseNode, map_variable: TypeMapVariable = None): # If its a map node, write the list values to "/tmp/output.txt" if node.node_type == "map": node = cast(MapNode, node) - iterate_on = self._context.run_log_store.get_parameters(self._context.run_id)[node.iterate_on] + iterate_on = self._context.run_log_store.get_parameters( + self._context.run_id + )[node.iterate_on] with open("/tmp/output.txt", mode="w", encoding="utf-8") as myfile: json.dump(iterate_on.get_value(), myfile, indent=4) @@ -847,11 +935,15 @@ def get_clean_name(self, node: BaseNode): if node.internal_name not in self._clean_names: sanitized = self.sanitize_name(node.name) tag = "".join(random.choices(string.ascii_lowercase + string.digits, k=6)) - self._clean_names[node.internal_name] = f"{sanitized}-{node.node_type}-{tag}" + self._clean_names[node.internal_name] = ( + f"{sanitized}-{node.node_type}-{tag}" + ) return self._clean_names[node.internal_name] - def compose_map_variable(self, list_of_iter_values: Optional[List] = None) -> TypeMapVariable: + def compose_map_variable( + self, list_of_iter_values: Optional[List] = None + ) -> TypeMapVariable: map_variable = OrderedDict() # If we are inside a map node, compose a map_variable @@ -883,11 +975,18 @@ def create_container_template( secrets_from_k8s=self.secrets_from_k8s, ) - if working_on.name == self._context.dag.start_at and self.expose_parameters_as_inputs: + if ( + working_on.name == self._context.dag.start_at + and self.expose_parameters_as_inputs + ): for key, value in self._get_parameters().items(): value = value.get_value() # type: ignore # Get the value from work flow parameters for dynamic behavior - if isinstance(value, int) or isinstance(value, float) or isinstance(value, str): + if ( + isinstance(value, int) + or isinstance(value, float) + or isinstance(value, str) + ): env_var = EnvVar( name=defaults.PARAMETER_PREFIX + key, value="{{workflow.parameters." + key + "}}", @@ -902,13 +1001,20 @@ def create_container_template( name=clean_name, active_deadline_seconds=( override.max_step_duration_in_seconds - if self.max_step_duration_in_seconds != override.max_step_duration_in_seconds + if self.max_step_duration_in_seconds + != override.max_step_duration_in_seconds else None ), container=container, - retry_strategy=override.retry_strategy if self.retry_strategy != override.retry_strategy else None, - tolerations=override.tolerations if self.tolerations != override.tolerations else None, - node_selector=override.node_selector if self.node_selector != override.node_selector else None, + retry_strategy=override.retry_strategy + if self.retry_strategy != override.retry_strategy + else None, + tolerations=override.tolerations + if self.tolerations != override.tolerations + else None, + node_selector=override.node_selector + if self.node_selector != override.node_selector + else None, ) # inputs are the "iterate_as" value map variables in the same order as they are observed @@ -926,14 +1032,18 @@ def create_container_template( return container_template - def _create_fan_out_template(self, composite_node, list_of_iter_values: Optional[List] = None): + def _create_fan_out_template( + self, composite_node, list_of_iter_values: Optional[List] = None + ): clean_name = self.get_clean_name(composite_node) inputs = [] # If we are fanning out already map state, we need to send the map variable inside # The container template also should be accepting an input parameter map_variable = None if list_of_iter_values: - map_variable = self.compose_map_variable(list_of_iter_values=list_of_iter_values) + map_variable = self.compose_map_variable( + list_of_iter_values=list_of_iter_values + ) for val in list_of_iter_values: inputs.append(Parameter(name=val)) @@ -966,16 +1076,22 @@ def _create_fan_out_template(self, composite_node, list_of_iter_values: Optional ) self._container_templates.append(container_template) - return DagTaskTemplate(name=f"{clean_name}-fan-out", template=f"{clean_name}-fan-out") + return DagTaskTemplate( + name=f"{clean_name}-fan-out", template=f"{clean_name}-fan-out" + ) - def _create_fan_in_template(self, composite_node, list_of_iter_values: Optional[List] = None): + def _create_fan_in_template( + self, composite_node, list_of_iter_values: Optional[List] = None + ): clean_name = self.get_clean_name(composite_node) inputs = [] # If we are fanning in already map state, we need to send the map variable inside # The container template also should be accepting an input parameter map_variable = None if list_of_iter_values: - map_variable = self.compose_map_variable(list_of_iter_values=list_of_iter_values) + map_variable = self.compose_map_variable( + list_of_iter_values=list_of_iter_values + ) for val in list_of_iter_values: inputs.append(Parameter(name=val)) @@ -998,10 +1114,15 @@ def _create_fan_in_template(self, composite_node, list_of_iter_values: Optional[ ) self._container_templates.append(container_template) clean_name = self.get_clean_name(composite_node) - return DagTaskTemplate(name=f"{clean_name}-fan-in", template=f"{clean_name}-fan-in") + return DagTaskTemplate( + name=f"{clean_name}-fan-in", template=f"{clean_name}-fan-in" + ) def _gather_task_templates_of_dag( - self, dag: Graph, dag_name="runnable-dag", list_of_iter_values: Optional[List] = None + self, + dag: Graph, + dag_name="runnable-dag", + list_of_iter_values: Optional[List] = None, ): current_node = dag.start_at previous_node = None @@ -1023,7 +1144,9 @@ def _gather_task_templates_of_dag( clean_name = self.get_clean_name(working_on) # If a task template for clean name exists, retrieve it (could have been created by on_failure) - template = templates.get(clean_name, DagTaskTemplate(name=clean_name, template=clean_name)) + template = templates.get( + clean_name, DagTaskTemplate(name=clean_name, template=clean_name) + ) # Link the current node to previous node, if the previous node was successful. if previous_node: @@ -1032,7 +1155,10 @@ def _gather_task_templates_of_dag( templates[clean_name] = template # On failure nodes - if working_on.node_type not in ["success", "fail"] and working_on._get_on_failure_node(): + if ( + working_on.node_type not in ["success", "fail"] + and working_on._get_on_failure_node() + ): failure_node = dag.get_node_by_name(working_on._get_on_failure_node()) # same logic, if a template exists, retrieve it @@ -1044,7 +1170,9 @@ def _gather_task_templates_of_dag( # If a task template for clean name exists, retrieve it failure_template = templates.get( failure_template_name, - DagTaskTemplate(name=failure_template_name, template=failure_template_name), + DagTaskTemplate( + name=failure_template_name, template=failure_template_name + ), ) failure_template.depends.append(f"{clean_name}.Failed") templates[failure_template_name] = failure_template @@ -1055,7 +1183,11 @@ def _gather_task_templates_of_dag( if not template.arguments: template.arguments = [] for value in list_of_iter_values: - template.arguments.append(Argument(name=value, value="{{inputs.parameters." + value + "}}")) + template.arguments.append( + Argument( + name=value, value="{{inputs.parameters." + value + "}}" + ) + ) # Move ahead to the next node previous_node = current_node @@ -1071,7 +1203,9 @@ def _gather_task_templates_of_dag( if list_of_iter_values: if not dag_template.inputs: dag_template.inputs = [] - dag_template.inputs.extend([Parameter(name=val) for val in list_of_iter_values]) + dag_template.inputs.extend( + [Parameter(name=val) for val in list_of_iter_values] + ) # Add the dag template to the list of templates self._dag_templates.append(dag_template) @@ -1102,7 +1236,9 @@ def execute_graph(self, dag: Graph, map_variable: Optional[dict] = None, **kwarg # TODO: Can we do reruns? for volume in self.spec.volumes: - self._container_volumes.append(ContainerVolume(name=volume.name, mount_path=volume.mount_path)) + self._container_volumes.append( + ContainerVolume(name=volume.name, mount_path=volume.mount_path) + ) # Container specifications are globally collected and added at the end. # Dag specifications are added as part of the dag traversal. @@ -1135,10 +1271,14 @@ def send_return_code(self, stage="traversal"): Raises: Exception: If the pipeline execution failed """ - if stage != "traversal": # traversal does no actual execution, so return code is pointless + if ( + stage != "traversal" + ): # traversal does no actual execution, so return code is pointless run_id = self._context.run_id - run_log = self._context.run_log_store.get_run_log_by_id(run_id=run_id, full=False) + run_log = self._context.run_log_store.get_run_log_by_id( + run_id=run_id, full=False + ) if run_log.status == defaults.FAIL: raise exceptions.ExecutionFailedError(run_id) @@ -1188,7 +1328,5 @@ class FileSystemCatalog(BaseIntegration): service_provider = "file-system" # The actual implementation of the service def validate(self, **kwargs): - msg = ( - "Argo cannot run work with file-system run log store. Unless you have made a mechanism to use volume mounts" - ) + msg = "Argo cannot run work with file-system run log store. Unless you have made a mechanism to use volume mounts" logger.warning(msg) diff --git a/runnable/extensions/executor/argo/specification.yaml b/extensions/executor/argo_specification.yaml similarity index 100% rename from runnable/extensions/executor/argo/specification.yaml rename to extensions/executor/argo_specification.yaml diff --git a/runnable/extensions/catalog/k8s_pvc/__init__.py b/extensions/executor/k8s_job/__init__.py similarity index 100% rename from runnable/extensions/catalog/k8s_pvc/__init__.py rename to extensions/executor/k8s_job/__init__.py diff --git a/runnable/extensions/executor/k8s_job/implementation_FF.py b/extensions/executor/k8s_job/implementation_FF.py similarity index 100% rename from runnable/extensions/executor/k8s_job/implementation_FF.py rename to extensions/executor/k8s_job/implementation_FF.py diff --git a/runnable/extensions/executor/k8s_job/integration_FF.py b/extensions/executor/k8s_job/integration_FF.py similarity index 93% rename from runnable/extensions/executor/k8s_job/integration_FF.py rename to extensions/executor/k8s_job/integration_FF.py index 47a27825..02432946 100644 --- a/runnable/extensions/executor/k8s_job/integration_FF.py +++ b/extensions/executor/k8s_job/integration_FF.py @@ -64,6 +64,7 @@ class FileSystemCatalog(BaseIntegration): def validate(self, **kwargs): msg = ( - "K8s Job cannot run work with file-system catalog." "Unless you have made a mechanism to use volume mounts" + "K8s Job cannot run work with file-system catalog." + "Unless you have made a mechanism to use volume mounts" ) logger.warning(msg) diff --git a/runnable/extensions/executor/local.py b/extensions/executor/local.py similarity index 71% rename from runnable/extensions/executor/local.py rename to extensions/executor/local.py index 2b8b565c..0ae884b8 100644 --- a/runnable/extensions/executor/local.py +++ b/extensions/executor/local.py @@ -2,8 +2,8 @@ from runnable import defaults from runnable.defaults import TypeMapVariable -from runnable.extensions.executor import GenericExecutor -from runnable.extensions.nodes import TaskNode +from extensions.executor import GenericExecutor +from extensions.nodes.nodes import TaskNode from runnable.nodes import BaseNode logger = logging.getLogger(defaults.LOGGER_NAME) @@ -25,7 +25,9 @@ class LocalExecutor(GenericExecutor): service_name: str = "local" _local: bool = True - def trigger_job(self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs): + def trigger_job( + self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs + ): """ In this mode of execution, we prepare for the node execution and execute the node @@ -37,7 +39,9 @@ def trigger_job(self, node: BaseNode, map_variable: TypeMapVariable = None, **kw self.prepare_for_node_execution() self.execute_node(node=node, map_variable=map_variable, **kwargs) - def execute_node(self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs): + def execute_node( + self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs + ): """ For local execution, we just execute the node. @@ -55,7 +59,9 @@ def execute_job(self, node: TaskNode): node (BaseNode): _description_ """ - step_log = self._context.run_log_store.create_step_log(node.name, node._get_step_log_name(map_variable=None)) + step_log = self._context.run_log_store.create_step_log( + node.name, node._get_step_log_name(map_variable=None) + ) self.add_code_identities(node=node, step_log=step_log) @@ -65,5 +71,9 @@ def execute_job(self, node: TaskNode): self.execute_node(node=node) # Update the run log status - step_log = self._context.run_log_store.get_step_log(node._get_step_log_name(), self._context.run_id) - self._context.run_log_store.update_run_log_status(run_id=self._context.run_id, status=step_log.status) + step_log = self._context.run_log_store.get_step_log( + node._get_step_log_name(), self._context.run_id + ) + self._context.run_log_store.update_run_log_status( + run_id=self._context.run_id, status=step_log.status + ) diff --git a/runnable/extensions/executor/local_container/implementation.py b/extensions/executor/local_container.py similarity index 88% rename from runnable/extensions/executor/local_container/implementation.py rename to extensions/executor/local_container.py index 5d3fab06..ae254cf4 100644 --- a/runnable/extensions/executor/local_container/implementation.py +++ b/extensions/executor/local_container.py @@ -5,11 +5,11 @@ from pydantic import Field from rich import print +from extensions.executor import GenericExecutor +from extensions.nodes.nodes import TaskNode from runnable import console, defaults, task_console, utils from runnable.datastore import StepLog from runnable.defaults import TypeMapVariable -from runnable.extensions.executor import GenericExecutor -from runnable.extensions.nodes import TaskNode from runnable.integration import BaseIntegration from runnable.nodes import BaseNode @@ -89,14 +89,18 @@ def add_code_identities(self, node: BaseNode, step_log: StepLog, **kwargs): code_id.code_identifier_url = "local docker host" step_log.code_identities.append(code_id) - def execute_node(self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs): + def execute_node( + self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs + ): """ We are already in the container, we just execute the node. The node is already prepared for execution. """ return self._execute_node(node, map_variable, **kwargs) - def execute_from_graph(self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs): + def execute_from_graph( + self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs + ): """ This is the entry point to from the graph execution. @@ -121,7 +125,9 @@ def execute_from_graph(self, node: BaseNode, map_variable: TypeMapVariable = Non map_variable (dict, optional): If the node if of a map state, this corresponds to the value of iterable. Defaults to None. """ - step_log = self._context.run_log_store.create_step_log(node.name, node._get_step_log_name(map_variable)) + step_log = self._context.run_log_store.create_step_log( + node.name, node._get_step_log_name(map_variable) + ) self.add_code_identities(node=node, step_log=step_log) @@ -146,7 +152,9 @@ def execute_from_graph(self, node: BaseNode, map_variable: TypeMapVariable = Non task_console.export_text(clear=True) task_name = node._resolve_map_placeholders(node.internal_name, map_variable) - console.print(f":runner: Executing the node {task_name} ... ", style="bold color(208)") + console.print( + f":runner: Executing the node {task_name} ... ", style="bold color(208)" + ) self.trigger_job(node=node, map_variable=map_variable, **kwargs) def execute_job(self, node: TaskNode): @@ -157,7 +165,9 @@ def execute_job(self, node: TaskNode): node (BaseNode): _description_ """ - step_log = self._context.run_log_store.create_step_log(node.name, node._get_step_log_name(map_variable=None)) + step_log = self._context.run_log_store.create_step_log( + node.name, node._get_step_log_name(map_variable=None) + ) self.add_code_identities(node=node, step_log=step_log) @@ -180,7 +190,9 @@ def execute_job(self, node: TaskNode): ) logger.warning(msg) - def trigger_job(self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs): + def trigger_job( + self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs + ): """ We come into this step via execute from graph, use trigger job to spin up the container. @@ -208,7 +220,9 @@ def trigger_job(self, node: BaseNode, map_variable: TypeMapVariable = None, **kw **kwargs, ) - step_log = self._context.run_log_store.get_step_log(node._get_step_log_name(map_variable), self._context.run_id) + step_log = self._context.run_log_store.get_step_log( + node._get_step_log_name(map_variable), self._context.run_id + ) if step_log.status != defaults.SUCCESS: msg = ( "Node execution inside the container failed. Please check the logs.\n" @@ -239,7 +253,9 @@ def _spin_container( api_client = docker.APIClient() except Exception as ex: logger.exception("Could not get access to docker") - raise Exception("Could not get the docker socket file, do you have docker installed?") from ex + raise Exception( + "Could not get the docker socket file, do you have docker installed?" + ) from ex try: logger.info(f"Running the command {command}") @@ -268,7 +284,9 @@ def _spin_container( # print(container.__dict__) container.start() - stream = api_client.logs(container=container.id, timestamps=True, stream=True, follow=True) + stream = api_client.logs( + container=container.id, timestamps=True, stream=True, follow=True + ) while True: try: output = next(stream).decode("utf-8") @@ -279,7 +297,9 @@ def _spin_container( logger.info("Docker Run completed") break - exit_status = api_client.inspect_container(container.id)["State"]["ExitCode"] + exit_status = api_client.inspect_container(container.id)["State"][ + "ExitCode" + ] if auto_remove_container: container.remove(force=True) @@ -303,9 +323,7 @@ class LocalContainerComputeFileSystemRunLogstore(BaseIntegration): service_provider = "file-system" # The actual implementation of the service def configure_for_traversal(self, **kwargs): - from runnable.extensions.run_log_store.file_system.implementation import ( - FileSystemRunLogstore, - ) + from extensions.run_log_store.file_system import FileSystemRunLogstore self.executor = cast(LocalContainerExecutor, self.executor) self.service = cast(FileSystemRunLogstore, self.service) @@ -317,9 +335,7 @@ def configure_for_traversal(self, **kwargs): } def configure_for_execution(self, **kwargs): - from runnable.extensions.run_log_store.file_system.implementation import ( - FileSystemRunLogstore, - ) + from extensions.run_log_store.file_system import FileSystemRunLogstore self.executor = cast(LocalContainerExecutor, self.executor) self.service = cast(FileSystemRunLogstore, self.service) @@ -337,9 +353,7 @@ class LocalContainerComputeChunkedFS(BaseIntegration): service_provider = "chunked-fs" # The actual implementation of the service def configure_for_traversal(self, **kwargs): - from runnable.extensions.run_log_store.chunked_file_system.implementation import ( - ChunkedFileSystemRunLogStore, - ) + from extensions.run_log_store.chunked_fs import ChunkedFileSystemRunLogStore self.executor = cast(LocalContainerExecutor, self.executor) self.service = cast(ChunkedFileSystemRunLogStore, self.service) @@ -351,9 +365,7 @@ def configure_for_traversal(self, **kwargs): } def configure_for_execution(self, **kwargs): - from runnable.extensions.run_log_store.chunked_file_system.implementation import ( - ChunkedFileSystemRunLogStore, - ) + from extensions.run_log_store.chunked_fs import ChunkedFileSystemRunLogStore self.executor = cast(LocalContainerExecutor, self.executor) self.service = cast(ChunkedFileSystemRunLogStore, self.service) @@ -371,9 +383,7 @@ class LocalContainerComputeFileSystemCatalog(BaseIntegration): service_provider = "file-system" # The actual implementation of the service def configure_for_traversal(self, **kwargs): - from runnable.extensions.catalog.file_system.implementation import ( - FileSystemCatalog, - ) + from extensions.catalog.file_system import FileSystemCatalog self.executor = cast(LocalContainerExecutor, self.executor) self.service = cast(FileSystemCatalog, self.service) @@ -385,9 +395,7 @@ def configure_for_traversal(self, **kwargs): } def configure_for_execution(self, **kwargs): - from runnable.extensions.catalog.file_system.implementation import ( - FileSystemCatalog, - ) + from extensions.catalog.file_system import FileSystemCatalog self.executor = cast(LocalContainerExecutor, self.executor) self.service = cast(FileSystemCatalog, self.service) @@ -405,10 +413,12 @@ class LocalContainerComputeDotEnvSecrets(BaseIntegration): service_provider = "dotenv" # The actual implementation of the service def validate(self, **kwargs): - logger.warning("Using dot env for non local deployments is not ideal, consider options") + logger.warning( + "Using dot env for non local deployments is not ideal, consider options" + ) def configure_for_traversal(self, **kwargs): - from runnable.extensions.secrets.dotenv.implementation import DotEnvSecrets + from extensions.secrets.dotenv import DotEnvSecrets self.executor = cast(LocalContainerExecutor, self.executor) self.service = cast(DotEnvSecrets, self.service) @@ -420,7 +430,7 @@ def configure_for_traversal(self, **kwargs): } def configure_for_execution(self, **kwargs): - from runnable.extensions.secrets.dotenv.implementation import DotEnvSecrets + from extensions.secrets.dotenv import DotEnvSecrets self.executor = cast(LocalContainerExecutor, self.executor) self.service = cast(DotEnvSecrets, self.service) diff --git a/runnable/extensions/executor/mocked/implementation.py b/extensions/executor/mocked.py similarity index 88% rename from runnable/extensions/executor/mocked/implementation.py rename to extensions/executor/mocked.py index e6e74802..6a1add2d 100644 --- a/runnable/extensions/executor/mocked/implementation.py +++ b/extensions/executor/mocked.py @@ -4,17 +4,19 @@ from pydantic import ConfigDict, Field +from extensions.executor import GenericExecutor +from extensions.nodes.nodes import TaskNode from runnable import context, defaults from runnable.defaults import TypeMapVariable -from runnable.extensions.executor import GenericExecutor -from runnable.extensions.nodes import TaskNode from runnable.nodes import BaseNode from runnable.tasks import BaseTaskType logger = logging.getLogger(defaults.LOGGER_NAME) -def create_executable(params: Dict[str, Any], model: Type[BaseTaskType], node_name: str) -> BaseTaskType: +def create_executable( + params: Dict[str, Any], model: Type[BaseTaskType], node_name: str +) -> BaseTaskType: class EasyModel(model): # type: ignore model_config = ConfigDict(extra="ignore") @@ -34,7 +36,9 @@ class MockedExecutor(GenericExecutor): def _context(self): return context.run_context - def execute_from_graph(self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs): + def execute_from_graph( + self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs + ): """ This is the entry point to from the graph execution. @@ -59,7 +63,9 @@ def execute_from_graph(self, node: BaseNode, map_variable: TypeMapVariable = Non map_variable (dict, optional): If the node if of a map state, this corresponds to the value of iterable. Defaults to None. """ - step_log = self._context.run_log_store.create_step_log(node.name, node._get_step_log_name(map_variable)) + step_log = self._context.run_log_store.create_step_log( + node.name, node._get_step_log_name(map_variable) + ) self.add_code_identities(node=node, step_log=step_log) @@ -97,7 +103,9 @@ def execute_from_graph(self, node: BaseNode, map_variable: TypeMapVariable = Non node_name=node.name, ) node_to_send.executable = executable - self._execute_node(node_to_send, map_variable=map_variable, mock=False, **kwargs) + self._execute_node( + node_to_send, map_variable=map_variable, mock=False, **kwargs + ) def _resolve_executor_config(self, node: BaseNode): """ @@ -139,7 +147,9 @@ def _resolve_executor_config(self, node: BaseNode): def execute_job(self, node: TaskNode): pass - def execute_node(self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs): + def execute_node( + self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs + ): """ The entry point for all executors apart from local. We have already prepared for node execution. diff --git a/extensions/executor/pyproject.toml b/extensions/executor/pyproject.toml new file mode 100644 index 00000000..bfd8615e --- /dev/null +++ b/extensions/executor/pyproject.toml @@ -0,0 +1,7 @@ +[project] +name = "executor" +version = "0.1.0" +description = "Add your description here" +readme = "README.md" +requires-python = ">=3.9" +dependencies = [] diff --git a/runnable/extensions/executor/retry/implementation.py b/extensions/executor/retry.py similarity index 84% rename from runnable/extensions/executor/retry/implementation.py rename to extensions/executor/retry.py index 4f4cb376..99a22e97 100644 --- a/runnable/extensions/executor/retry/implementation.py +++ b/extensions/executor/retry.py @@ -2,11 +2,11 @@ from functools import cached_property from typing import Any, Dict, Optional +from extensions.executor import GenericExecutor +from extensions.nodes.nodes import TaskNode from runnable import context, defaults, exceptions from runnable.datastore import RunLog from runnable.defaults import TypeMapVariable -from runnable.extensions.executor import GenericExecutor -from runnable.extensions.nodes import TaskNode from runnable.nodes import BaseNode logger = logging.getLogger(defaults.LOGGER_NAME) @@ -47,7 +47,9 @@ def original_run_log(self): def _set_up_for_re_run(self, params: Dict[str, Any]) -> None: # Sync the previous run log catalog to this one. - self._context.catalog_handler.sync_between_runs(previous_run_id=self.run_id, run_id=self._context.run_id) + self._context.catalog_handler.sync_between_runs( + previous_run_id=self.run_id, run_id=self._context.run_id + ) params.update(self.original_run_log.parameters) @@ -62,7 +64,9 @@ def _set_up_run_log(self, exists_ok=False): # Should the parameters be copied from previous execution # self._set_up_for_re_run(params=params) - def execute_from_graph(self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs): + def execute_from_graph( + self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs + ): """ This is the entry point to from the graph execution. @@ -87,7 +91,9 @@ def execute_from_graph(self, node: BaseNode, map_variable: TypeMapVariable = Non map_variable (dict, optional): If the node if of a map state, this corresponds to the value of iterable. Defaults to None. """ - step_log = self._context.run_log_store.create_step_log(node.name, node._get_step_log_name(map_variable)) + step_log = self._context.run_log_store.create_step_log( + node.name, node._get_step_log_name(map_variable) + ) self.add_code_identities(node=node, step_log=step_log) @@ -120,7 +126,9 @@ def execute_from_graph(self, node: BaseNode, map_variable: TypeMapVariable = Non self._context.run_log_store.add_step_log(step_log, self._context.run_id) self.execute_node(node=node, map_variable=map_variable, **kwargs) - def _is_step_eligible_for_rerun(self, node: BaseNode, map_variable: TypeMapVariable = None): + def _is_step_eligible_for_rerun( + self, node: BaseNode, map_variable: TypeMapVariable = None + ): """ In case of a re-run, this method checks to see if the previous run step status to determine if a re-run is necessary. @@ -140,13 +148,17 @@ def _is_step_eligible_for_rerun(self, node: BaseNode, map_variable: TypeMapVaria """ node_step_log_name = node._get_step_log_name(map_variable=map_variable) - logger.info(f"Scanning previous run logs for node logs of: {node_step_log_name}") + logger.info( + f"Scanning previous run logs for node logs of: {node_step_log_name}" + ) if self._restart_initiated: return True try: - previous_attempt_log, _ = self.original_run_log.search_step_by_internal_name(node_step_log_name) + previous_attempt_log, _ = ( + self.original_run_log.search_step_by_internal_name(node_step_log_name) + ) except exceptions.StepLogNotFoundError: logger.warning(f"Did not find the node {node.name} in previous run log") self._restart_initiated = True @@ -157,11 +169,15 @@ def _is_step_eligible_for_rerun(self, node: BaseNode, map_variable: TypeMapVaria if previous_attempt_log.status == defaults.SUCCESS: return False # We need not run the node - logger.info(f"The new execution should start executing graph from this node {node.name}") + logger.info( + f"The new execution should start executing graph from this node {node.name}" + ) self._restart_initiated = True return True - def execute_node(self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs): + def execute_node( + self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs + ): self._execute_node(node, map_variable=map_variable, **kwargs) def execute_job(self, node: TaskNode): diff --git a/runnable/extensions/nodes.py b/extensions/nodes/nodes.py similarity index 85% rename from runnable/extensions/nodes.py rename to extensions/nodes/nodes.py index a3b32d21..b86009ef 100644 --- a/runnable/extensions/nodes.py +++ b/extensions/nodes/nodes.py @@ -48,8 +48,12 @@ class TaskNode(ExecutableNode): @classmethod def parse_from_config(cls, config: Dict[str, Any]) -> "TaskNode": # separate task config from node config - task_config = {k: v for k, v in config.items() if k not in TaskNode.model_fields.keys()} - node_config = {k: v for k, v in config.items() if k in TaskNode.model_fields.keys()} + task_config = { + k: v for k, v in config.items() if k not in TaskNode.model_fields.keys() + } + node_config = { + k: v for k, v in config.items() if k in TaskNode.model_fields.keys() + } executable = create_task(task_config) return cls(executable=executable, **node_config, **task_config) @@ -82,7 +86,9 @@ def execute( Returns: StepAttempt: The attempt object """ - step_log = self._context.run_log_store.get_step_log(self._get_step_log_name(map_variable), self._context.run_id) + step_log = self._context.run_log_store.get_step_log( + self._get_step_log_name(map_variable), self._context.run_id + ) if not mock: # Do not run if we are mocking the execution, could be useful for caching and dry runs @@ -143,7 +149,9 @@ def execute( Returns: StepAttempt: The step attempt object """ - step_log = self._context.run_log_store.get_step_log(self._get_step_log_name(map_variable), self._context.run_id) + step_log = self._context.run_log_store.get_step_log( + self._get_step_log_name(map_variable), self._context.run_id + ) attempt_log = datastore.StepAttempt( status=defaults.SUCCESS, @@ -156,7 +164,9 @@ def execute( self._get_branch_log_name(map_variable), self._context.run_id ) run_or_branch_log.status = defaults.FAIL - self._context.run_log_store.add_branch_log(run_or_branch_log, self._context.run_id) + self._context.run_log_store.add_branch_log( + run_or_branch_log, self._context.run_id + ) step_log.status = attempt_log.status @@ -203,7 +213,9 @@ def execute( Returns: StepAttempt: The step attempt object """ - step_log = self._context.run_log_store.get_step_log(self._get_step_log_name(map_variable), self._context.run_id) + step_log = self._context.run_log_store.get_step_log( + self._get_step_log_name(map_variable), self._context.run_id + ) attempt_log = datastore.StepAttempt( status=defaults.SUCCESS, @@ -216,7 +228,9 @@ def execute( self._get_branch_log_name(map_variable), self._context.run_id ) run_or_branch_log.status = defaults.SUCCESS - self._context.run_log_store.add_branch_log(run_or_branch_log, self._context.run_id) + self._context.run_log_store.add_branch_log( + run_or_branch_log, self._context.run_id + ) step_log.status = attempt_log.status @@ -297,9 +311,13 @@ def fan_out(self, map_variable: TypeMapVariable = None, **kwargs): """ # Prepare the branch logs for internal_branch_name, _ in self.branches.items(): - effective_branch_name = self._resolve_map_placeholders(internal_branch_name, map_variable=map_variable) + effective_branch_name = self._resolve_map_placeholders( + internal_branch_name, map_variable=map_variable + ) - branch_log = self._context.run_log_store.create_branch_log(effective_branch_name) + branch_log = self._context.run_log_store.create_branch_log( + effective_branch_name + ) branch_log.status = defaults.PROCESSING self._context.run_log_store.add_branch_log(branch_log, self._context.run_id) @@ -327,7 +345,9 @@ def execute_as_graph(self, map_variable: TypeMapVariable = None, **kwargs): self.fan_out(map_variable=map_variable, **kwargs) for _, branch in self.branches.items(): - self._context.executor.execute_graph(branch, map_variable=map_variable, **kwargs) + self._context.executor.execute_graph( + branch, map_variable=map_variable, **kwargs + ) self.fan_in(map_variable=map_variable, **kwargs) @@ -341,18 +361,26 @@ def fan_in(self, map_variable: TypeMapVariable = None, **kwargs): executor (BaseExecutor): The executor class as defined by the config map_variable (dict, optional): If the node is part of a map. Defaults to None. """ - effective_internal_name = self._resolve_map_placeholders(self.internal_name, map_variable=map_variable) + effective_internal_name = self._resolve_map_placeholders( + self.internal_name, map_variable=map_variable + ) step_success_bool = True for internal_branch_name, _ in self.branches.items(): - effective_branch_name = self._resolve_map_placeholders(internal_branch_name, map_variable=map_variable) - branch_log = self._context.run_log_store.get_branch_log(effective_branch_name, self._context.run_id) + effective_branch_name = self._resolve_map_placeholders( + internal_branch_name, map_variable=map_variable + ) + branch_log = self._context.run_log_store.get_branch_log( + effective_branch_name, self._context.run_id + ) if branch_log.status != defaults.SUCCESS: step_success_bool = False # Collate all the results and update the status of the step - step_log = self._context.run_log_store.get_step_log(effective_internal_name, self._context.run_id) + step_log = self._context.run_log_store.get_step_log( + effective_internal_name, self._context.run_id + ) if step_success_bool: #  If none failed step_log.status = defaults.SUCCESS @@ -382,7 +410,6 @@ class MapNode(CompositeNode): node_type: str = Field(default="map", serialization_alias="type") iterate_on: str iterate_as: str - iterate_index: bool = Field(default=False) # TODO: Need to design this reducer: Optional[str] = Field(default=None) branch: Graph is_composite: bool = True @@ -394,7 +421,6 @@ def get_summary(self) -> Dict[str, Any]: "branch": self.branch.get_summary(), "iterate_on": self.iterate_on, "iterate_as": self.iterate_as, - "iterate_index": self.iterate_index, "reducer": self.reducer, } @@ -436,12 +462,19 @@ def parse_from_config(cls, config: Dict[str, Any]) -> "MapNode": @property def branch_returns(self): - branch_returns: List[Tuple[str, Union[ObjectParameter, MetricParameter, JsonParameter]]] = [] + branch_returns: List[ + Tuple[str, Union[ObjectParameter, MetricParameter, JsonParameter]] + ] = [] for _, node in self.branch.nodes.items(): if isinstance(node, TaskNode): for task_return in node.executable.returns: if task_return.kind == "json": - branch_returns.append((task_return.name, JsonParameter(kind="json", value="", reduced=False))) + branch_returns.append( + ( + task_return.name, + JsonParameter(kind="json", value="", reduced=False), + ) + ) elif task_return.kind == "object": branch_returns.append( ( @@ -455,7 +488,10 @@ def branch_returns(self): ) elif task_return.kind == "metric": branch_returns.append( - (task_return.name, MetricParameter(kind="metric", value="", reduced=False)) + ( + task_return.name, + MetricParameter(kind="metric", value="", reduced=False), + ) ) else: raise Exception("kind should be either json or object") @@ -490,20 +526,27 @@ def fan_out(self, map_variable: TypeMapVariable = None, **kwargs): executor (BaseExecutor): The executor class as defined by the config map_variable (dict, optional): If the node is part of map. Defaults to None. """ - iterate_on = self._context.run_log_store.get_parameters(self._context.run_id)[self.iterate_on].get_value() + iterate_on = self._context.run_log_store.get_parameters(self._context.run_id)[ + self.iterate_on + ].get_value() # Prepare the branch logs for iter_variable in iterate_on: effective_branch_name = self._resolve_map_placeholders( self.internal_name + "." + str(iter_variable), map_variable=map_variable ) - branch_log = self._context.run_log_store.create_branch_log(effective_branch_name) + branch_log = self._context.run_log_store.create_branch_log( + effective_branch_name + ) - console.print(f"Branch log created for {effective_branch_name}: {branch_log}") + console.print( + f"Branch log created for {effective_branch_name}: {branch_log}" + ) branch_log.status = defaults.PROCESSING self._context.run_log_store.add_branch_log(branch_log, self._context.run_id) # Gather all the returns of the task nodes and create parameters in reduced=False state. + # TODO: Why are we preemptively creating the parameters? raw_parameters = {} if map_variable: # If we are in a map state already, the param should have an index of the map variable. @@ -516,7 +559,9 @@ def fan_out(self, map_variable: TypeMapVariable = None, **kwargs): param_name, param_type = branch_return raw_parameters[f"{param_name}"] = param_type.copy() - self._context.run_log_store.set_parameters(parameters=raw_parameters, run_id=self._context.run_id) + self._context.run_log_store.set_parameters( + parameters=raw_parameters, run_id=self._context.run_id + ) def execute_as_graph(self, map_variable: TypeMapVariable = None, **kwargs): """ @@ -547,7 +592,9 @@ def execute_as_graph(self, map_variable: TypeMapVariable = None, **kwargs): iterate_on = None try: - iterate_on = self._context.run_log_store.get_parameters(self._context.run_id)[self.iterate_on].get_value() + iterate_on = self._context.run_log_store.get_parameters( + self._context.run_id + )[self.iterate_on].get_value() except KeyError as e: raise Exception( ( @@ -566,7 +613,9 @@ def execute_as_graph(self, map_variable: TypeMapVariable = None, **kwargs): effective_map_variable = map_variable or OrderedDict() effective_map_variable[self.iterate_as] = iter_variable - self._context.executor.execute_graph(self.branch, map_variable=effective_map_variable, **kwargs) + self._context.executor.execute_graph( + self.branch, map_variable=effective_map_variable, **kwargs + ) self.fan_in(map_variable=map_variable, **kwargs) @@ -584,20 +633,26 @@ def fan_in(self, map_variable: TypeMapVariable = None, **kwargs): iterate_on = params[self.iterate_on].get_value() # # Find status of the branches step_success_bool = True - effective_internal_name = self._resolve_map_placeholders(self.internal_name, map_variable=map_variable) + effective_internal_name = self._resolve_map_placeholders( + self.internal_name, map_variable=map_variable + ) for iter_variable in iterate_on: effective_branch_name = self._resolve_map_placeholders( self.internal_name + "." + str(iter_variable), map_variable=map_variable ) - branch_log = self._context.run_log_store.get_branch_log(effective_branch_name, self._context.run_id) + branch_log = self._context.run_log_store.get_branch_log( + effective_branch_name, self._context.run_id + ) # console.print(f"Branch log for {effective_branch_name}: {branch_log}") if branch_log.status != defaults.SUCCESS: step_success_bool = False # Collate all the results and update the status of the step - step_log = self._context.run_log_store.get_step_log(effective_internal_name, self._context.run_id) + step_log = self._context.run_log_store.get_step_log( + effective_internal_name, self._context.run_id + ) if step_success_bool: #  If none failed and nothing is waiting step_log.status = defaults.SUCCESS @@ -610,19 +665,21 @@ def fan_in(self, map_variable: TypeMapVariable = None, **kwargs): # The final value of the parameter is the result of the reduce function. reducer_f = self.get_reducer_function() - def update_param(params: Dict[str, Parameter], reducer_f: Callable, map_prefix: str = ""): - from runnable.extensions.executor.mocked.implementation import ( - MockedExecutor, - ) - + def update_param( + params: Dict[str, Parameter], reducer_f: Callable, map_prefix: str = "" + ): for branch_return in self.branch_returns: param_name, _ = branch_return to_reduce = [] for iter_variable in iterate_on: try: - to_reduce.append(params[f"{iter_variable}_{param_name}"].get_value()) + to_reduce.append( + params[f"{iter_variable}_{param_name}"].get_value() + ) except KeyError as e: + from extensions.executor.mocked import MockedExecutor + if isinstance(self._context.executor, MockedExecutor): pass else: @@ -648,7 +705,9 @@ def update_param(params: Dict[str, Parameter], reducer_f: Callable, map_prefix: else: update_param(params, reducer_f) - self._context.run_log_store.set_parameters(parameters=params, run_id=self._context.run_id) + self._context.run_log_store.set_parameters( + parameters=params, run_id=self._context.run_id + ) class DagNode(CompositeNode): @@ -677,7 +736,9 @@ def get_summary(self) -> Dict[str, Any]: @field_validator("internal_branch_name") @classmethod - def validate_internal_branch_name(cls, internal_branch_name: str, info: ValidationInfo): + def validate_internal_branch_name( + cls, internal_branch_name: str, info: ValidationInfo + ): internal_name = info.data["internal_name"] return internal_name + "." + defaults.DAG_BRANCH_NAME @@ -697,9 +758,14 @@ def parse_from_config(cls, config: Dict[str, Any]) -> "DagNode": dag_config = utils.load_yaml(config["dag_definition"]) if "dag" not in dag_config: - raise Exception("No DAG found in dag_definition, please provide it in dag block") + raise Exception( + "No DAG found in dag_definition, please provide it in dag block" + ) - branch = create_graph(dag_config["dag"], internal_branch_name=internal_name + "." + defaults.DAG_BRANCH_NAME) + branch = create_graph( + dag_config["dag"], + internal_branch_name=internal_name + "." + defaults.DAG_BRANCH_NAME, + ) return cls(branch=branch, **config) @@ -717,7 +783,9 @@ def _get_branch_by_name(self, branch_name: str): Exception: If the branch_name is not 'dag' """ if branch_name != self.internal_branch_name: - raise Exception(f"Node of type {self.node_type} only allows a branch of name {defaults.DAG_BRANCH_NAME}") + raise Exception( + f"Node of type {self.node_type} only allows a branch of name {defaults.DAG_BRANCH_NAME}" + ) return self.branch @@ -730,9 +798,13 @@ def fan_out(self, map_variable: TypeMapVariable = None, **kwargs): executor (BaseExecutor): The executor class as defined by the config map_variable (dict, optional): _description_. Defaults to None. """ - effective_branch_name = self._resolve_map_placeholders(self.internal_branch_name, map_variable=map_variable) + effective_branch_name = self._resolve_map_placeholders( + self.internal_branch_name, map_variable=map_variable + ) - branch_log = self._context.run_log_store.create_branch_log(effective_branch_name) + branch_log = self._context.run_log_store.create_branch_log( + effective_branch_name + ) branch_log.status = defaults.PROCESSING self._context.run_log_store.add_branch_log(branch_log, self._context.run_id) @@ -762,7 +834,9 @@ def execute_as_graph(self, map_variable: TypeMapVariable = None, **kwargs): **kwargs: Optional kwargs passed around """ self.fan_out(map_variable=map_variable, **kwargs) - self._context.executor.execute_graph(self.branch, map_variable=map_variable, **kwargs) + self._context.executor.execute_graph( + self.branch, map_variable=map_variable, **kwargs + ) self.fan_in(map_variable=map_variable, **kwargs) def fan_in(self, map_variable: TypeMapVariable = None, **kwargs): @@ -776,14 +850,22 @@ def fan_in(self, map_variable: TypeMapVariable = None, **kwargs): map_variable (dict, optional): If the node is part of type dag. Defaults to None. """ step_success_bool = True - effective_branch_name = self._resolve_map_placeholders(self.internal_branch_name, map_variable=map_variable) - effective_internal_name = self._resolve_map_placeholders(self.internal_name, map_variable=map_variable) + effective_branch_name = self._resolve_map_placeholders( + self.internal_branch_name, map_variable=map_variable + ) + effective_internal_name = self._resolve_map_placeholders( + self.internal_name, map_variable=map_variable + ) - branch_log = self._context.run_log_store.get_branch_log(effective_branch_name, self._context.run_id) + branch_log = self._context.run_log_store.get_branch_log( + effective_branch_name, self._context.run_id + ) if branch_log.status != defaults.SUCCESS: step_success_bool = False - step_log = self._context.run_log_store.get_step_log(effective_internal_name, self._context.run_id) + step_log = self._context.run_log_store.get_step_log( + effective_internal_name, self._context.run_id + ) step_log.status = defaults.PROCESSING if step_success_bool: #  If none failed and nothing is waiting @@ -854,7 +936,9 @@ def execute( Returns: [type]: [description] """ - step_log = self._context.run_log_store.get_step_log(self._get_step_log_name(map_variable), self._context.run_id) + step_log = self._context.run_log_store.get_step_log( + self._get_step_log_name(map_variable), self._context.run_id + ) attempt_log = datastore.StepAttempt( status=defaults.SUCCESS, diff --git a/extensions/nodes/pyproject.toml b/extensions/nodes/pyproject.toml new file mode 100644 index 00000000..c96b2072 --- /dev/null +++ b/extensions/nodes/pyproject.toml @@ -0,0 +1,7 @@ +[project] +name = "nodes" +version = "0.1.0" +description = "Add your description here" +readme = "README.md" +requires-python = ">=3.9" +dependencies = [] diff --git a/runnable/extensions/executor/argo/__init__.py b/extensions/run_log_store/__init__.py similarity index 100% rename from runnable/extensions/executor/argo/__init__.py rename to extensions/run_log_store/__init__.py diff --git a/runnable/extensions/run_log_store/chunked_file_system/implementation.py b/extensions/run_log_store/chunked_fs.py similarity index 93% rename from runnable/extensions/run_log_store/chunked_file_system/implementation.py rename to extensions/run_log_store/chunked_fs.py index 0054e36c..f2cda565 100644 --- a/runnable/extensions/run_log_store/chunked_file_system/implementation.py +++ b/extensions/run_log_store/chunked_fs.py @@ -4,8 +4,8 @@ from string import Template from typing import Any, Dict, Optional, Sequence, Union +from extensions.run_log_store.generic_chunked import ChunkedRunLogStore from runnable import defaults, utils -from runnable.extensions.run_log_store.generic_chunked import ChunkedRunLogStore logger = logging.getLogger(defaults.LOGGER_NAME) @@ -26,7 +26,9 @@ def get_summary(self) -> Dict[str, Any]: return summary - def get_matches(self, run_id: str, name: str, multiple_allowed: bool = False) -> Optional[Union[Sequence[T], T]]: + def get_matches( + self, run_id: str, name: str, multiple_allowed: bool = False + ) -> Optional[Union[Sequence[T], T]]: """ Get contents of files matching the pattern name* diff --git a/runnable/extensions/run_log_store/db/implementation_FF.py b/extensions/run_log_store/db/implementation_FF.py similarity index 92% rename from runnable/extensions/run_log_store/db/implementation_FF.py rename to extensions/run_log_store/db/implementation_FF.py index a7788284..1bf8359b 100644 --- a/runnable/extensions/run_log_store/db/implementation_FF.py +++ b/extensions/run_log_store/db/implementation_FF.py @@ -50,12 +50,16 @@ class DBLog(Base): __tablename__ = self.db_name pk = Column(Integer, Sequence("id_seq"), primary_key=True) run_id = Column(Text, index=True) - attribute_key = Column(Text) # run_log, step_internal_name, parameter_key etc + attribute_key = Column( + Text + ) # run_log, step_internal_name, parameter_key etc attribute_type = Column(Text) # RunLog, Step, Branch, Parameter attribute_value = Column(Text) # The JSON string created_at = Column(DateTime, default=datetime.datetime.utcnow) - self._engine = sqlalchemy.create_engine(connection_string, pool_pre_ping=True) + self._engine = sqlalchemy.create_engine( + connection_string, pool_pre_ping=True + ) self._session = sessionmaker(bind=self._engine) self._DB_LOG = DBLog self._connection_string = connection_string @@ -72,7 +76,9 @@ def create_tables(self): engine = sqlalchemy.create_engine(self._connection_string) self._base.metadata.create_all(engine) - def get_matches(self, run_id: str, name: str, multiple_allowed: bool = False) -> Optional[Union[List[Path], Path]]: + def get_matches( + self, run_id: str, name: str, multiple_allowed: bool = False + ) -> Optional[Union[List[Path], Path]]: """ Get contents of files matching the pattern name* diff --git a/runnable/extensions/run_log_store/db/integration_FF.py b/extensions/run_log_store/db/integration_FF.py similarity index 100% rename from runnable/extensions/run_log_store/db/integration_FF.py rename to extensions/run_log_store/db/integration_FF.py diff --git a/runnable/extensions/run_log_store/file_system/implementation.py b/extensions/run_log_store/file_system.py similarity index 97% rename from runnable/extensions/run_log_store/file_system/implementation.py rename to extensions/run_log_store/file_system.py index 9f1ec07d..8a5e9fb0 100644 --- a/runnable/extensions/run_log_store/file_system/implementation.py +++ b/extensions/run_log_store/file_system.py @@ -136,5 +136,7 @@ def put_run_log(self, run_log: RunLog, **kwargs): """ # Puts the run_log into the database """ - logger.info(f"{self.service_name} Putting the run log in the DB: {run_log.run_id}") + logger.info( + f"{self.service_name} Putting the run log in the DB: {run_log.run_id}" + ) self.write_to_folder(run_log) diff --git a/runnable/extensions/run_log_store/generic_chunked.py b/extensions/run_log_store/generic_chunked.py similarity index 88% rename from runnable/extensions/run_log_store/generic_chunked.py rename to extensions/run_log_store/generic_chunked.py index 55f9e1cf..86f3778a 100644 --- a/runnable/extensions/run_log_store/generic_chunked.py +++ b/extensions/run_log_store/generic_chunked.py @@ -72,7 +72,9 @@ def naming_pattern(self, log_type: LogTypes, name: str = "") -> str: return "-".join([self.LogTypes.PARAMETER.value, name]) if not name: - raise Exception(f"Name should be provided for naming pattern for {log_type}") + raise Exception( + f"Name should be provided for naming pattern for {log_type}" + ) if log_type == self.LogTypes.STEP_LOG: return "-".join([self.LogTypes.STEP_LOG.value, name, "${creation_time}"]) @@ -83,7 +85,9 @@ def naming_pattern(self, log_type: LogTypes, name: str = "") -> str: raise Exception("Unexpected log type") @abstractmethod - def get_matches(self, run_id: str, name: str, multiple_allowed: bool = False) -> Optional[Union[Sequence[T], T]]: + def get_matches( + self, run_id: str, name: str, multiple_allowed: bool = False + ) -> Optional[Union[Sequence[T], T]]: """ Get contents of persistence layer matching the pattern name* @@ -128,7 +132,9 @@ def store(self, run_id: str, log_type: LogTypes, contents: dict, name: str = "") name (str, optional): The name against the contents have to be stored. Defaults to ''. """ naming_pattern = self.naming_pattern(log_type=log_type, name=name) - match = self.get_matches(run_id=run_id, name=naming_pattern, multiple_allowed=False) + match = self.get_matches( + run_id=run_id, name=naming_pattern, multiple_allowed=False + ) # The boolean multiple allowed confuses mypy a lot! name_to_give: str = "" insert = False @@ -138,12 +144,16 @@ def store(self, run_id: str, log_type: LogTypes, contents: dict, name: str = "") contents = dict(existing_contents, **contents) name_to_give = match # type: ignore else: - name_to_give = Template(naming_pattern).safe_substitute({"creation_time": str(int(time.time_ns()))}) + name_to_give = Template(naming_pattern).safe_substitute( + {"creation_time": str(int(time.time_ns()))} + ) insert = True self._store(run_id=run_id, contents=contents, name=name_to_give, insert=insert) - def retrieve(self, run_id: str, log_type: LogTypes, name: str = "", multiple_allowed=False) -> Any: + def retrieve( + self, run_id: str, log_type: LogTypes, name: str = "", multiple_allowed=False + ) -> Any: """ Retrieve the model given a log_type and a name. Use multiple_allowed to control if you are expecting multiple of them. @@ -174,7 +184,9 @@ def retrieve(self, run_id: str, log_type: LogTypes, name: str = "", multiple_all naming_pattern = self.naming_pattern(log_type=log_type, name=name) - matches = self.get_matches(run_id=run_id, name=naming_pattern, multiple_allowed=multiple_allowed) + matches = self.get_matches( + run_id=run_id, name=naming_pattern, multiple_allowed=multiple_allowed + ) if matches: if not multiple_allowed: @@ -191,7 +203,9 @@ def retrieve(self, run_id: str, log_type: LogTypes, name: str = "", multiple_all raise EntityNotFoundError() - def orderly_retrieve(self, run_id: str, log_type: LogTypes) -> Dict[str, Union[StepLog, BranchLog]]: + def orderly_retrieve( + self, run_id: str, log_type: LogTypes + ) -> Dict[str, Union[StepLog, BranchLog]]: """Should only be used by prepare full run log. Retrieves the StepLog or BranchLog sorted according to creation time. @@ -271,8 +285,12 @@ def _prepare_full_run_log(self, run_log: RunLog): run_id = run_log.run_id run_log.parameters = self.get_parameters(run_id=run_id) - ordered_steps = self.orderly_retrieve(run_id=run_id, log_type=self.LogTypes.STEP_LOG) - ordered_branches = self.orderly_retrieve(run_id=run_id, log_type=self.LogTypes.BRANCH_LOG) + ordered_steps = self.orderly_retrieve( + run_id=run_id, log_type=self.LogTypes.STEP_LOG + ) + ordered_branches = self.orderly_retrieve( + run_id=run_id, log_type=self.LogTypes.BRANCH_LOG + ) current_branch: Any = None # It could be str, None, RunLog for step_internal_name in ordered_steps: @@ -284,7 +302,9 @@ def _prepare_full_run_log(self, run_log: RunLog): else: current_branch = ordered_branches[current_branch] step_to_add_branch = ordered_steps[step_to_add_branch] # type: ignore - step_to_add_branch.branches[current_branch.internal_name] = current_branch # type: ignore + step_to_add_branch.branches[current_branch.internal_name] = ( # type: ignore + current_branch + ) current_branch.steps[step_internal_name] = ordered_steps[step_internal_name] @@ -320,7 +340,9 @@ def create_run_log( status=status, ) - self.store(run_id=run_id, contents=run_log.model_dump(), log_type=self.LogTypes.RUN_LOG) + self.store( + run_id=run_id, contents=run_log.model_dump(), log_type=self.LogTypes.RUN_LOG + ) return run_log def get_run_log_by_id(self, run_id: str, full: bool = False, **kwargs) -> RunLog: @@ -340,7 +362,9 @@ def get_run_log_by_id(self, run_id: str, full: bool = False, **kwargs) -> RunLog """ try: logger.info(f"{self.service_name} Getting a Run Log for : {run_id}") - run_log = self.retrieve(run_id=run_id, log_type=self.LogTypes.RUN_LOG, multiple_allowed=False) + run_log = self.retrieve( + run_id=run_id, log_type=self.LogTypes.RUN_LOG, multiple_allowed=False + ) if full: self._prepare_full_run_log(run_log=run_log) @@ -363,7 +387,9 @@ def put_run_log(self, run_log: RunLog, **kwargs): NotImplementedError: This is a base class and therefore has no default implementation """ run_id = run_log.run_id - self.store(run_id=run_id, contents=run_log.model_dump(), log_type=self.LogTypes.RUN_LOG) + self.store( + run_id=run_id, contents=run_log.model_dump(), log_type=self.LogTypes.RUN_LOG + ) def get_parameters(self, run_id: str, **kwargs) -> dict: """ @@ -383,7 +409,9 @@ def get_parameters(self, run_id: str, **kwargs) -> dict: """ parameters: Dict[str, Parameter] = {} try: - parameters_list = self.retrieve(run_id=run_id, log_type=self.LogTypes.PARAMETER, multiple_allowed=True) + parameters_list = self.retrieve( + run_id=run_id, log_type=self.LogTypes.PARAMETER, multiple_allowed=True + ) for param in parameters_list: for key, value in param.items(): if value["kind"] == "json": @@ -471,7 +499,9 @@ def get_step_log(self, internal_name: str, run_id: str, **kwargs) -> StepLog: RunLogNotFoundError: If the run log for run_id is not found in the datastore StepLogNotFoundError: If the step log for internal_name is not found in the datastore for run_id """ - logger.info(f"{self.service_name} Getting the step log: {internal_name} of {run_id}") + logger.info( + f"{self.service_name} Getting the step log: {internal_name} of {run_id}" + ) step_log = self.retrieve( run_id=run_id, @@ -501,7 +531,9 @@ def add_step_log(self, step_log: StepLog, run_id: str, **kwargs): BranchLogNotFoundError: If the branch of the step log for internal_name is not found in the datastore for run_id """ - logger.info(f"{self.service_name} Adding the step log to DB: {step_log.internal_name}") + logger.info( + f"{self.service_name} Adding the step log to DB: {step_log.internal_name}" + ) self.store( run_id=run_id, @@ -510,7 +542,9 @@ def add_step_log(self, step_log: StepLog, run_id: str, **kwargs): name=step_log.internal_name, ) - def get_branch_log(self, internal_branch_name: str, run_id: str, **kwargs) -> Union[BranchLog, RunLog]: + def get_branch_log( + self, internal_branch_name: str, run_id: str, **kwargs + ) -> Union[BranchLog, RunLog]: """ Returns the branch log by the internal branch name for the run id @@ -525,10 +559,14 @@ def get_branch_log(self, internal_branch_name: str, run_id: str, **kwargs) -> Un """ if not internal_branch_name: return self.get_run_log_by_id(run_id=run_id) - branch = self.retrieve(run_id=run_id, log_type=self.LogTypes.BRANCH_LOG, name=internal_branch_name) + branch = self.retrieve( + run_id=run_id, log_type=self.LogTypes.BRANCH_LOG, name=internal_branch_name + ) return branch - def add_branch_log(self, branch_log: Union[BranchLog, RunLog], run_id: str, **kwargs): + def add_branch_log( + self, branch_log: Union[BranchLog, RunLog], run_id: str, **kwargs + ): """ The method should: # Get the run log @@ -548,7 +586,9 @@ def add_branch_log(self, branch_log: Union[BranchLog, RunLog], run_id: str, **kw internal_branch_name = branch_log.internal_name - logger.info(f"{self.service_name} Adding the branch log to DB: {branch_log.internal_name}") + logger.info( + f"{self.service_name} Adding the branch log to DB: {branch_log.internal_name}" + ) self.store( run_id=run_id, log_type=self.LogTypes.BRANCH_LOG, diff --git a/extensions/run_log_store/pyproject.toml b/extensions/run_log_store/pyproject.toml new file mode 100644 index 00000000..161ae399 --- /dev/null +++ b/extensions/run_log_store/pyproject.toml @@ -0,0 +1,7 @@ +[project] +name = "run_log_store" +version = "0.1.0" +description = "Extensions to run log store" +readme = "README.md" +requires-python = ">=3.9" +dependencies = [] diff --git a/runnable/extensions/executor/k8s_job/__init__.py b/extensions/secrets/__init__.py similarity index 100% rename from runnable/extensions/executor/k8s_job/__init__.py rename to extensions/secrets/__init__.py diff --git a/extensions/secrets/dotenv.py b/extensions/secrets/dotenv.py new file mode 100644 index 00000000..0d6f9f1e --- /dev/null +++ b/extensions/secrets/dotenv.py @@ -0,0 +1,62 @@ +import logging + +from dotenv import dotenv_values + +from runnable import defaults, exceptions +from runnable.secrets import BaseSecrets + +logger = logging.getLogger(defaults.LOGGER_NAME) + + +class DotEnvSecrets(BaseSecrets): + """ + A secret manager which uses .env files for secrets. + + We recommend this secrets manager only for local development and should not be used for anything close to + production. + """ + + service_name: str = "dotenv" + location: str = defaults.DOTENV_FILE_LOCATION + secrets: dict = {} + + @property + def secrets_location(self): + """ + Return the location of the .env file. + If the user has not over-ridden it, it defaults to .env file in the project root. + + Returns: + str: The location of the secrets file + """ + return self.location + + def _load_secrets(self): + """ + Use dotenv to load the secrets + """ + self.secrets = dotenv_values(self.secrets_location) + + def get(self, name: str = "", **kwargs) -> str: + """ + Get a secret of name from the secrets file. + + + Args: + name (str): The name of the secret to retrieve + + Raises: + Exception: If the secret by the name is not found. + + Returns: + str: The value of the secret + """ + if not self.secrets: + self._load_secrets() + + if name in self.secrets: + return self.secrets[name] + + raise exceptions.SecretNotFoundError( + secret_name=name, secret_setting=self.secrets_location + ) diff --git a/extensions/secrets/pyproject.toml b/extensions/secrets/pyproject.toml new file mode 100644 index 00000000..9271223e --- /dev/null +++ b/extensions/secrets/pyproject.toml @@ -0,0 +1,7 @@ +[project] +name = "secrets" +version = "0.1.0" +description = "Extension to manage secrets" +readme = "README.md" +requires-python = ">=3.9" +dependencies = [] diff --git a/poetry.lock b/poetry.lock deleted file mode 100644 index b158f414..00000000 --- a/poetry.lock +++ /dev/null @@ -1,5678 +0,0 @@ -# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. - 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(>=0.2.1)"] - -[extras] -database = ["sqlalchemy"] -docker = ["docker"] -notebook = ["ploomber-engine"] - -[metadata] -lock-version = "2.0" -python-versions = ">=3.9,<3.13" -content-hash = "9c91eef8afc884316f34e94f7722de173f438406b20b89f4670ac6e580fffa1a" diff --git a/pyproject.toml b/pyproject.toml index 22c8e770..6bb85bfb 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,238 +1,116 @@ -[tool.poetry] +[project] name = "runnable" -version = "0" -description = "A Compute agnostic pipelining software" -authors = ["Vijay Vammi "] -license = "Apache-2.0" +version = "0.0.0" +description = "Add your description here" readme = "README.md" -homepage = "https://github.com/vijayvammi/runnable" -repository = "https://github.com/vijayvammi/runnable" -documentation = "https://github.com/vijayvammi/runnable" - -[tool.poetry.dependencies] -python = ">=3.9,<3.13" -"ruamel.yaml" = "*" -"ruamel.yaml.clib" = "*" -pydantic = "^2.5" -stevedore = "^3.5.0" -"click" = "*" -click-plugins = "^1.1.1" -typing-extensions = { version = "*", python = "<3.8" } -docker = { version = "*", optional = true } -sqlalchemy = { version = "*", optional = true } -rich = "^13.5.2" -mlflow-skinny = { version = "*", optional = true } -ploomber-engine = "^0.0.31" -dill = "^0.3.8" - -[tool.poetry.extras] -docker = ['docker'] -notebook = ['ploomber-engine'] -database = ["sqlalchemy"] - - -[tool.poetry.group.dev.dependencies] -pytest = "*" -pytest-cov = "*" -pytest-mock = "*" -mypy = "^1.5.1" -tox = "^3.24.5" -pre-commit = "*" -ruff = "^0.0.259" -commit-linter = "^1.0.2" -black = "^23.3.0" -gitlint = "^0.19.1" -pandas = "^2.2.2" # for testing examples - -[tool.poetry.group.release.dependencies] -python-semantic-release = "^9.4.2" - -[tool.poetry.group.docs.dependencies] -mkdocs = "*" -mkdocs-material = "*" -mkdocs-section-index = "^0.3.5" -mkdocstrings = { extras = ["python"], version = "^0.24.0" } -nbconvert = "^7.13.1" -mkdocs-click = "^0.8.1" - -[tool.poetry.group.tutorial.dependencies] -pandas = "^2.2.1" -numpy = "^1.26.4" -scikit-learn = "^1.4.1.post1" -en-core-web-sm = { url = "https://github.com/explosion/spacy-models/releases/download/en_core_web_sm-3.7.1/en_core_web_sm-3.7.1.tar.gz" } -matplotlib = "^3.8.3" - - -[tool.poetry.group.compare.dependencies] -torch = "^2.3.0" -torchvision = "^0.18.0" -tensorflow = "^2.16.1" +authors = [ + { name = "Vammi, Vijay", email = "vijay.vammi@astrazeneca.com" } +] +requires-python = ">=3.9" +dependencies = [ + "click-plugins>=1.1.1", + "click<=8.1.3", + "pydantic>=2.10.3", + "ruamel-yaml>=0.18.6", + "stevedore>=5.4.0", + "rich>=13.9.4", + "dill>=0.3.9", + "setuptools>=75.6.0", + "python-dotenv>=1.0.1", + "typer>=0.15.1", + "nodes", + "secrets", + "catalog", + "run_log_store", + "executor", +] -[tool.poetry.scripts] +[project.scripts] runnable = 'runnable.cli:cli' +[project.optional-dependencies] +docker = [ + "docker>=7.1.0", +] +notebook = [ + "ploomber-engine>=0.0.33", +] +examples = [ + "pandas>=2.2.3", +] +release = [ + "python-semantic-release>=9.15.2", +] -[tool.poetry.group.binary.dependencies] -pyinstaller = "^5.13.2" +[build-system] +requires = ["hatchling"] +build-backend = "hatchling.build" + +[dependency-groups] +dev = [ + "pytest-cov>=6.0.0", + "pytest>=8.3.4", + "pytest-mock>=3.14.0", + "mypy>=1.13.0", + "pre-commit>=4.0.1", +] +docs = [ + "mkdocs-section-index>=0.3.9", + "mkdocs>=1.6.1", + "mkdocs-material>=9.5.49", + "mkdocstrings>=0.27.0", + "mkdocs-click>=0.8.1", + "mkdocstrings-python>=1.12.2", +] -[tool.poetry.group.perf.dependencies] -# Run the performace tests poetry run python -m pyflame -p ./flamegraph.pl runnable/entrypoints.py -pyflame = "^0.3.1" +[tool.uv.workspace] +members = ["extensions/*"] +[tool.uv.sources] +nodes = {workspace = true} +secrets = {workspace = true} +catalog = {workspace = true} +run_log_store = {workspace = true} +executor = {workspace = true} -# Plugins for Executors -[tool.poetry.plugins."executor"] -"local" = "runnable.extensions.executor.local:LocalExecutor" -"local-container" = "runnable.extensions.executor.local_container.implementation:LocalContainerExecutor" -"argo" = "runnable.extensions.executor.argo.implementation:ArgoExecutor" -"mocked" = "runnable.extensions.executor.mocked.implementation:MockedExecutor" -"retry" = "runnable.extensions.executor.retry.implementation:RetryExecutor" -# Plugins for Catalog -[tool.poetry.plugins."catalog"] -"do-nothing" = "runnable.catalog:DoNothingCatalog" -"file-system" = "runnable.extensions.catalog.file_system.implementation:FileSystemCatalog" +[project.entry-points.'executor'] +"local" = "extensions.executor.local:LocalExecutor" +"local-container" = "extensions.executor.local_container:LocalContainerExecutor" +"argo" = "extensions.executor.argo:ArgoExecutor" +"mocked" = "extensions.executor.mocked:MockedExecutor" +"retry" = "extensions.executor.retry:RetryExecutor" -# Plugins for Secrets -[tool.poetry.plugins."secrets"] +[project.entry-points.'secrets'] "do-nothing" = "runnable.secrets:DoNothingSecretManager" -"dotenv" = "runnable.extensions.secrets.dotenv.implementation:DotEnvSecrets" +"dotenv" = "extensions.secrets.dotenv:DotEnvSecrets" "env-secrets" = "runnable.secrets:EnvSecretsManager" -# Plugins for Run Log store -[tool.poetry.plugins."run_log_store"] -"buffered" = "runnable.datastore:BufferRunLogstore" -"file-system" = "runnable.extensions.run_log_store.file_system.implementation:FileSystemRunLogstore" -"chunked-fs" = "runnable.extensions.run_log_store.chunked_file_system.implementation:ChunkedFileSystemRunLogStore" +[project.entry-points.'catalog'] +"do-nothing" = "runnable.catalog:DoNothingCatalog" +"file-system" = "extensions.catalog.file_system:FileSystemCatalog" +[project.entry-points.'run_log_store'] +"buffered" = "runnable.datastore:BufferRunLogstore" +file-system = "extensions.run_log_store.file_system:FileSystemRunLogstore" +"chunked-fs" = "extensions.run_log_store.chunked_fs:ChunkedFileSystemRunLogStore" -# Plugins for Pickler -[tool.poetry.plugins."pickler"] +[project.entry-points.'pickler'] "pickle" = "runnable.pickler:NativePickler" +[project.entry-points.'integration'] +# left empty for now -# Plugins for Integration -[tool.poetry.plugins."integration"] -# Left empty for 3rd party integrations +[project.entry-points.'nodes'] +"task" = "extensions.nodes.nodes:TaskNode" +"fail" = "extensions.nodes.nodes:FailNode" +"success" = "extensions.nodes.nodes:SuccessNode" +"parallel" = "extensions.nodes.nodes:ParallelNode" +"map" = "extensions.nodes.nodes:MapNode" +"dag" = "extensions.nodes.nodes:DagNode" +"stub" = "extensions.nodes.nodes:StubNode" -# Plugins for Tasks -[tool.poetry.plugins."tasks"] +[project.entry-points.'tasks'] "python" = "runnable.tasks:PythonTaskType" "shell" = "runnable.tasks:ShellTaskType" "notebook" = "runnable.tasks:NotebookTaskType" - -# Plugins for Nodes -[tool.poetry.plugins."nodes"] -"task" = "runnable.extensions.nodes:TaskNode" -"fail" = "runnable.extensions.nodes:FailNode" -"success" = "runnable.extensions.nodes:SuccessNode" -"parallel" = "runnable.extensions.nodes:ParallelNode" -"map" = "runnable.extensions.nodes:MapNode" -"dag" = "runnable.extensions.nodes:DagNode" -"stub" = "runnable.extensions.nodes:StubNode" - - -[tool.black] -line-length = 120 - -[tool.ruff] -# Enable pycodestyle (`E`) and Pyflakes (`F`) codes by default. -select = ["E", "F", "W"] - -# extend-select = ["I"] - -ignore = [] - -# Allow autofix for all enabled rules (when `--fix`) is provided. -fixable = ["A", "B", "C", "D", "E", "F", "I"] -unfixable = [] - -# Exclude a variety of commonly ignored directories. -exclude = [ - ".bzr", - ".direnv", - ".eggs", - ".git", - ".hg", - ".mypy_cache", - ".nox", - ".pants.d", - ".pytype", - ".ruff_cache", - ".svn", - ".tox", - ".venv", - "__pypackages__", - "_build", - "buck-out", - "build", - "dist", - "node_modules", - "venv", - "examples/kubeflow", - "examples/tutorials/", -] -per-file-ignores = {} - -# Builtins - -builtins = ["__version__"] - -# Same as Black. -line-length = 120 - -# Allow unused variables when underscore-prefixed. -dummy-variable-rgx = "^(_+|(_+[a-zA-Z0-9_]*[a-zA-Z0-9]+?))$" - -# Assume Python 3.10. -target-version = "py310" - -[tool.ruff.pydocstyle] -convention = "google" - -[tool.ruff.mccabe] -# Unlike Flake8, default to a complexity level of 10. -max-complexity = 10 - -[build-system] -requires = ["poetry-core>=1.0.0"] -build-backend = "poetry.core.masonry.api" - -[tool.semantic_release] -allow_zero_version = true -major_on_zero = false -tag_format = "{version}" - -[tool.semantic_release.remote.token] -env = "GH_TOKEN" - -[tool.semantic_release.branches.main] -match = "" - -[tool.semantic_release.remote] -ignore_token_for_push = true - -[tool.coverage.run] -branch = true - -[tool.coverage.report] -# Regexes for lines to exclude from consideration -exclude_lines = ["pragma: no cover"] - -include_namespace_packages = true -show_missing = true - -exclude_also = [ - # Don't complain if tests don't hit defensive assertion code: - "raise AssertionError", - "raise NotImplementedError", - - # Don't complain about abstract methods, they aren't run: - "@(abc\\.)?abstractmethod", -] - -omit = [ - "runnable/cli.py", - "runnable/extensions/executor/demo_renderer/*", - "*FF.py", -] diff --git a/runnable/__init__.py b/runnable/__init__.py index 1f789315..70f4b11c 100644 --- a/runnable/__init__.py +++ b/runnable/__init__.py @@ -34,14 +34,3 @@ # Needed to disable ploomber telemetry os.environ["PLOOMBER_STATS_ENABLED"] = "false" - -## TODO: Summary should be a bit better for catalog. -## If the execution fails, hint them about the retry executor. -# Make the retry executor loose! - -# TODO: Think of model registry as a central place to store models. -# TODO: Implement Sagemaker pipelines as a executor. - - -# TODO: Think of way of generating dag hash without executor configuration -# Try to get a release diff --git a/runnable/catalog.py b/runnable/catalog.py index f8339289..80e17a42 100644 --- a/runnable/catalog.py +++ b/runnable/catalog.py @@ -11,6 +11,26 @@ logger = logging.getLogger(defaults.LOGGER_NAME) +def is_catalog_out_of_sync( + catalog, synced_catalogs=Optional[List[DataCatalog]] +) -> bool: + """ + Check if the catalog items are out of sync from already cataloged objects. + If they are, return False. + If the object does not exist or synced catalog does not exist, return True + """ + if not synced_catalogs: + return True # If nothing has been synced in the past + + for synced_catalog in synced_catalogs: + if synced_catalog.catalog_relative_path == catalog.catalog_relative_path: + if synced_catalog.data_hash == catalog.data_hash: + return False + return True + + return True # The object does not exist, sync it + + # --8<-- [start:docs] @@ -26,8 +46,7 @@ class BaseCatalog(ABC, BaseModel): model_config = ConfigDict(extra="forbid") @abstractmethod - def get_summary(self) -> Dict[str, Any]: - ... + def get_summary(self) -> Dict[str, Any]: ... @property def _context(self): @@ -38,7 +57,9 @@ def compute_data_folder(self) -> str: return defaults.COMPUTE_DATA_FOLDER @abstractmethod - def get(self, name: str, run_id: str, compute_data_folder: str = "", **kwargs) -> List[DataCatalog]: + def get( + self, name: str, run_id: str, compute_data_folder: str = "", **kwargs + ) -> List[DataCatalog]: """ Get the catalog item by 'name' for the 'run id' and store it in compute data folder. @@ -119,7 +140,9 @@ class DoNothingCatalog(BaseCatalog): def get_summary(self) -> Dict[str, Any]: return {} - def get(self, name: str, run_id: str, compute_data_folder: str = "", **kwargs) -> List[DataCatalog]: + def get( + self, name: str, run_id: str, compute_data_folder: str = "", **kwargs + ) -> List[DataCatalog]: """ Does nothing """ @@ -145,4 +168,3 @@ def sync_between_runs(self, previous_run_id: str, run_id: str): Does nothing """ logger.info("Using a do-nothing catalog, doing nothing while sync between runs") - ... diff --git a/runnable/cli.py b/runnable/cli.py index 5bb718e7..2a0f0f7b 100644 --- a/runnable/cli.py +++ b/runnable/cli.py @@ -22,9 +22,13 @@ def cli(): @cli.command("execute", short_help="Execute/translate a pipeline") -@click.option("-f", "--file", default="pipeline.yaml", help="The pipeline definition file", show_default=True) +@click.argument("filename") @click.option( - "-c", "--config-file", default=None, help="config file, in yaml, to be used for the run", show_default=True + "-c", + "--config-file", + default=None, + help="config file, in yaml, to be used for the run", + show_default=True, ) @click.option( "-p", @@ -41,8 +45,12 @@ def cli(): type=click.Choice(["INFO", "DEBUG", "WARNING", "ERROR", "FATAL"]), ) @click.option("--tag", default="", help="A tag attached to the run") -@click.option("--run-id", help="An optional run_id, one would be generated if not provided") -def execute(file, config_file, parameters_file, log_level, tag, run_id): # pragma: no cover +@click.option( + "--run-id", help="An optional run_id, one would be generated if not provided" +) +def execute( + filename, config_file, parameters_file, log_level, tag, run_id +): # pragma: no cover """ Execute a pipeline @@ -64,20 +72,35 @@ def execute(file, config_file, parameters_file, log_level, tag, run_id): # prag entrypoints.execute( configuration_file=config_file, - pipeline_file=file, + pipeline_file=filename, tag=tag, run_id=run_id, parameters_file=parameters_file, ) -@cli.command("execute_single_node", short_help="Internal entry point to execute a single node", hidden=True) +@cli.command( + "execute_single_node", + short_help="Internal entry point to execute a single node", + hidden=True, +) @click.argument("run_id") @click.argument("step_name") -@click.option("--map-variable", default="", help="The map variable dictionary in str", show_default=True) -@click.option("-f", "--file", default="", help="The pipeline definition file", show_default=True) @click.option( - "-c", "--config-file", default=None, help="config file, in yaml, to be used for the run", show_default=True + "--map-variable", + default="", + help="The map variable dictionary in str", + show_default=True, +) +@click.option( + "-f", "--file", default="", help="The pipeline definition file", show_default=True +) +@click.option( + "-c", + "--config-file", + default=None, + help="config file, in yaml, to be used for the run", + show_default=True, ) @click.option( "-p", @@ -94,7 +117,9 @@ def execute(file, config_file, parameters_file, log_level, tag, run_id): # prag type=click.Choice(["INFO", "DEBUG", "WARNING", "ERROR", "FATAL"]), ) @click.option("--tag", default="", help="A tag attached to the run") -def execute_single_node(run_id, step_name, map_variable, file, config_file, parameters_file, log_level, tag): +def execute_single_node( + run_id, step_name, map_variable, file, config_file, parameters_file, log_level, tag +): """ Internal entrypoint for runnable to execute a single node. @@ -119,7 +144,11 @@ def execute_single_node(run_id, step_name, map_variable, file, config_file, para @click.argument("filename") @click.option("--entrypoint", default=defaults.ENTRYPOINT.USER.value, hidden=True) @click.option( - "-c", "--config-file", default=None, help="config file, in yaml, to be used for the run", show_default=True + "-c", + "--config-file", + default=None, + help="config file, in yaml, to be used for the run", + show_default=True, ) @click.option( "-p", @@ -136,10 +165,20 @@ def execute_single_node(run_id, step_name, map_variable, file, config_file, para type=click.Choice(["INFO", "DEBUG", "WARNING", "ERROR", "FATAL"]), ) @click.option("--data-folder", "-d", default="data/", help="The catalog data folder") -@click.option("--put-in-catalog", "-put", default=None, multiple=True, help="The data to put from the catalog") -@click.option("--notebook-output-path", default="", help="The output path for the notebook") +@click.option( + "--put-in-catalog", + "-put", + default=None, + multiple=True, + help="The data to put from the catalog", +) +@click.option( + "--notebook-output-path", default="", help="The output path for the notebook" +) @click.option("--tag", help="A tag attached to the run") -@click.option("--run-id", help="An optional run_id, one would be generated if not provided") +@click.option( + "--run-id", help="An optional run_id, one would be generated if not provided" +) def execute_notebook( filename, entrypoint, @@ -159,7 +198,10 @@ def execute_notebook( The execution plan is unchained. """ logger.setLevel(log_level) - catalog_config = {"compute_data_folder": data_folder, "put": list(put_in_catalog) if put_in_catalog else None} + catalog_config = { + "compute_data_folder": data_folder, + "put": list(put_in_catalog) if put_in_catalog else None, + } if not filename.endswith(".ipynb"): raise Exception("A notebook should always have ipynb as the extension") @@ -179,7 +221,11 @@ def execute_notebook( @click.argument("command") @click.option("--entrypoint", default=defaults.ENTRYPOINT.USER.value, hidden=True) @click.option( - "-c", "--config-file", default=None, help="config file, in yaml, to be used for the run", show_default=True + "-c", + "--config-file", + default=None, + help="config file, in yaml, to be used for the run", + show_default=True, ) @click.option( "-p", @@ -196,11 +242,27 @@ def execute_notebook( type=click.Choice(["INFO", "DEBUG", "WARNING", "ERROR", "FATAL"]), ) @click.option("--data-folder", "-d", default="data/", help="The catalog data folder") -@click.option("--put-in-catalog", "-put", default=None, multiple=True, help="The data to put from the catalog") +@click.option( + "--put-in-catalog", + "-put", + default=None, + multiple=True, + help="The data to put from the catalog", +) @click.option("--tag", help="A tag attached to the run") -@click.option("--run-id", help="An optional run_id, one would be generated if not provided") +@click.option( + "--run-id", help="An optional run_id, one would be generated if not provided" +) def execute_function( - command, entrypoint, config_file, parameters_file, log_level, data_folder, put_in_catalog, tag, run_id + command, + entrypoint, + config_file, + parameters_file, + log_level, + data_folder, + put_in_catalog, + tag, + run_id, ): """ External entry point to execute a python function in isolation. @@ -209,7 +271,10 @@ def execute_function( The execution plan is unchained. """ logger.setLevel(log_level) - catalog_config = {"compute_data_folder": data_folder, "put": list(put_in_catalog) if put_in_catalog else None} + catalog_config = { + "compute_data_folder": data_folder, + "put": list(put_in_catalog) if put_in_catalog else None, + } entrypoints.execute_function( entrypoint=entrypoint, command=command, @@ -221,14 +286,35 @@ def execute_function( ) -@cli.command("fan", short_help="Internal entry point to fan in or out a composite node", hidden=True) +@cli.command( + "fan", + short_help="Internal entry point to fan in or out a composite node", + hidden=True, +) @click.argument("run_id") @click.argument("step_name") -@click.option("-m", "--mode", help="fan in or fan out", required=True, type=click.Choice(["in", "out"])) -@click.option("--map-variable", default="", help="The map variable dictionary in str", show_default=True) -@click.option("-f", "--file", default="", help="The pipeline definition file", show_default=True) @click.option( - "-c", "--config-file", default=None, help="config file, in yaml, to be used for the run", show_default=True + "-m", + "--mode", + help="fan in or fan out", + required=True, + type=click.Choice(["in", "out"]), +) +@click.option( + "--map-variable", + default="", + help="The map variable dictionary in str", + show_default=True, +) +@click.option( + "-f", "--file", default="", help="The pipeline definition file", show_default=True +) +@click.option( + "-c", + "--config-file", + default=None, + help="config file, in yaml, to be used for the run", + show_default=True, ) @click.option( "-p", @@ -245,7 +331,17 @@ def execute_function( type=click.Choice(["INFO", "DEBUG", "WARNING", "ERROR", "FATAL"]), ) @click.option("--tag", default="", help="A tag attached to the run") -def fan(run_id, step_name, mode, map_variable, file, config_file, parameters_file, log_level, tag): +def fan( + run_id, + step_name, + mode, + map_variable, + file, + config_file, + parameters_file, + log_level, + tag, +): """ Internal entrypoint for runnable to fan in or out a composite node. diff --git a/runnable/datastore.py b/runnable/datastore.py index c7125351..aa74f5d9 100644 --- a/runnable/datastore.py +++ b/runnable/datastore.py @@ -18,7 +18,6 @@ from pydantic import BaseModel, Field, computed_field -import runnable.context as context from runnable import defaults, exceptions logger = logging.getLogger(defaults.LOGGER_NAME) @@ -56,14 +55,11 @@ def __eq__(self, other): return other.name == self.name -""" -The theory behind reduced: - parameters returned by steps in map node are only reduced by the end of the map step, fan-in. - If they are accessed within the map step, the value should be the value returned by the step in the map step. - - Once the map state is complete, we can set the reduce to true and have the value as - the reduced value. Its either a list or a custom function return. -""" +# The theory behind reduced: +# parameters returned by steps in map node are only reduced by the end of the map step, fan-in. +# If they are accessed within the map step, the value should be the value returned by the step in the map step. +# Once the map state is complete, we can set the reduce to true and have the value as +# the reduced value. Its either a list or a custom function return. class JsonParameter(BaseModel): @@ -125,7 +121,9 @@ def put_object(self, data: Any) -> None: os.remove(self.file_name) # Remove after loading -Parameter = Annotated[Union[JsonParameter, ObjectParameter, MetricParameter], Field(discriminator="kind")] +Parameter = Annotated[ + Union[JsonParameter, ObjectParameter, MetricParameter], Field(discriminator="kind") +] class StepAttempt(BaseModel): @@ -157,8 +155,12 @@ class CodeIdentity(BaseModel, extra="allow"): code_identifier: Optional[str] = "" # GIT sha code or docker image id code_identifier_type: Optional[str] = "" # git or docker - code_identifier_dependable: Optional[bool] = False # If git, checks if the tree is clean. - code_identifier_url: Optional[str] = "" # The git remote url or docker repository url + code_identifier_dependable: Optional[bool] = ( + False # If git, checks if the tree is clean. + ) + code_identifier_url: Optional[str] = ( + "" # The git remote url or docker repository url + ) code_identifier_message: Optional[str] = "" # Any optional message @@ -185,18 +187,28 @@ def get_summary(self) -> Dict[str, Any]: summary: Dict[str, Any] = {} summary["Name"] = self.internal_name - summary["Input catalog content"] = [dc.name for dc in self.data_catalog if dc.stage == "get"] + summary["Input catalog content"] = [ + dc.name for dc in self.data_catalog if dc.stage == "get" + ] summary["Available parameters"] = [ - (p, v.description) for attempt in self.attempts for p, v in attempt.input_parameters.items() + (p, v.description) + for attempt in self.attempts + for p, v in attempt.input_parameters.items() ] - summary["Output catalog content"] = [dc.name for dc in self.data_catalog if dc.stage == "put"] + summary["Output catalog content"] = [ + dc.name for dc in self.data_catalog if dc.stage == "put" + ] summary["Output parameters"] = [ - (p, v.description) for attempt in self.attempts for p, v in attempt.output_parameters.items() + (p, v.description) + for attempt in self.attempts + for p, v in attempt.output_parameters.items() ] summary["Metrics"] = [ - (p, v.description) for attempt in self.attempts for p, v in attempt.user_defined_metrics.items() + (p, v.description) + for attempt in self.attempts + for p, v in attempt.user_defined_metrics.items() ] cis = [] @@ -312,10 +324,18 @@ def get_summary(self) -> Dict[str, Any]: summary["Catalog Location"] = _context.catalog_handler.get_summary() summary["Full Run log present at: "] = _context.run_log_store.get_summary() - run_log = _context.run_log_store.get_run_log_by_id(run_id=_context.run_id, full=True) + run_log = _context.run_log_store.get_run_log_by_id( + run_id=_context.run_id, full=True + ) - summary["Final Parameters"] = {p: v.description for p, v in run_log.parameters.items()} - summary["Collected metrics"] = {p: v.description for p, v in run_log.parameters.items() if v.kind == "metric"} + summary["Final Parameters"] = { + p: v.description for p, v in run_log.parameters.items() + } + summary["Collected metrics"] = { + p: v.description + for p, v in run_log.parameters.items() + if v.kind == "metric" + } return summary @@ -338,7 +358,9 @@ def get_data_catalogs_by_stage(self, stage: str = "put") -> List[DataCatalog]: return list(set(data_catalogs)) - def search_branch_by_internal_name(self, i_name: str) -> Tuple[Union[BranchLog, RunLog], Union[StepLog, None]]: + def search_branch_by_internal_name( + self, i_name: str + ) -> Tuple[Union[BranchLog, RunLog], Union[StepLog, None]]: """ Given a branch internal name, search for it in the run log. @@ -385,7 +407,9 @@ def search_branch_by_internal_name(self, i_name: str) -> Tuple[Union[BranchLog, raise exceptions.BranchLogNotFoundError(self.run_id, i_name) - def search_step_by_internal_name(self, i_name: str) -> Tuple[StepLog, Union[BranchLog, None]]: + def search_step_by_internal_name( + self, i_name: str + ) -> Tuple[StepLog, Union[BranchLog, None]]: """ Given a steps internal name, search for the step name. @@ -415,7 +439,9 @@ def search_step_by_internal_name(self, i_name: str) -> Tuple[StepLog, Union[Bran # Its odd, so we are in brach name current_branch = current_step.branches[".".join(dot_path[: i + 1])] # type: ignore current_steps = current_branch.steps - logger.debug(f"Finding step log for {i_name} in branch: {current_branch}") + logger.debug( + f"Finding step log for {i_name} in branch: {current_branch}" + ) else: # Its even, so we are in step, we start here! current_step = current_steps[".".join(dot_path[: i + 1])] @@ -428,10 +454,6 @@ def search_step_by_internal_name(self, i_name: str) -> Tuple[StepLog, Union[Bran raise exceptions.StepLogNotFoundError(self.run_id, i_name) -# All outside modules should interact with dataclasses using the RunLogStore to promote extensibility -# If you want to customize dataclass, extend BaseRunLogStore and implement the methods as per the specification - - class BaseRunLogStore(ABC, BaseModel): """ The base class of a Run Log Store with many common methods implemented. @@ -441,8 +463,7 @@ class BaseRunLogStore(ABC, BaseModel): service_type: str = "run_log_store" @abstractmethod - def get_summary(self) -> Dict[str, Any]: - ... + def get_summary(self) -> Dict[str, Any]: ... @property def _context(self): @@ -629,7 +650,9 @@ def get_step_log(self, internal_name: str, run_id: str, **kwargs) -> StepLog: RunLogNotFoundError: If the run log for run_id is not found in the datastore StepLogNotFoundError: If the step log for internal_name is not found in the datastore for run_id """ - logger.info(f"{self.service_name} Getting the step log: {internal_name} of {run_id}") + logger.info( + f"{self.service_name} Getting the step log: {internal_name} of {run_id}" + ) run_log = self.get_run_log_by_id(run_id=run_id) step_log, _ = run_log.search_step_by_internal_name(internal_name) return step_log @@ -675,10 +698,14 @@ def create_branch_log(self, internal_branch_name: str, **kwargs) -> BranchLog: BranchLog: Uncommitted and initialized with defaults BranchLog object """ # Create a new BranchLog - logger.info(f"{self.service_name} Creating a Branch Log : {internal_branch_name}") + logger.info( + f"{self.service_name} Creating a Branch Log : {internal_branch_name}" + ) return BranchLog(internal_name=internal_branch_name, status=defaults.CREATED) - def get_branch_log(self, internal_branch_name: str, run_id: str, **kwargs) -> Union[BranchLog, RunLog]: + def get_branch_log( + self, internal_branch_name: str, run_id: str, **kwargs + ) -> Union[BranchLog, RunLog]: """ Returns the branch log by the internal branch name for the run id @@ -697,7 +724,9 @@ def get_branch_log(self, internal_branch_name: str, run_id: str, **kwargs) -> Un branch, _ = run_log.search_branch_by_internal_name(internal_branch_name) return branch - def add_branch_log(self, branch_log: Union[BranchLog, RunLog], run_id: str, **kwargs): + def add_branch_log( + self, branch_log: Union[BranchLog, RunLog], run_id: str, **kwargs + ): """ The method should: # Get the run log @@ -775,7 +804,9 @@ class BufferRunLogstore(BaseRunLogStore): """ service_name: str = "buffered" - run_log: Optional[RunLog] = Field(default=None, exclude=True) # For a buffered Run Log, this is the database + run_log: Optional[RunLog] = Field( + default=None, exclude=True + ) # For a buffered Run Log, this is the database def get_summary(self) -> Dict[str, Any]: summary = {"Type": self.service_name, "Location": "Not persisted"} @@ -826,5 +857,10 @@ def put_run_log(self, run_log: RunLog, **kwargs): # Puts the run log in the db # Raises Exception if not found """ - logger.info(f"{self.service_name} Putting the run log in the DB: {run_log.run_id}") + logger.info( + f"{self.service_name} Putting the run log in the DB: {run_log.run_id}" + ) self.run_log = run_log + + +import runnable.context as context # noqa: F401, E402 diff --git a/runnable/defaults.py b/runnable/defaults.py index 7d3ad3f7..ddee3de3 100644 --- a/runnable/defaults.py +++ b/runnable/defaults.py @@ -33,7 +33,6 @@ class RunnableConfig(TypedDict, total=False): secrets: Optional[ServiceConfig] catalog: Optional[ServiceConfig] executor: Optional[ServiceConfig] - experiment_tracker: Optional[ServiceConfig] pickler: Optional[ServiceConfig] diff --git a/runnable/entrypoints.py b/runnable/entrypoints.py index 303c8269..8102ce3d 100644 --- a/runnable/entrypoints.py +++ b/runnable/entrypoints.py @@ -35,6 +35,7 @@ def prepare_configurations( force_local_executor: bool = False, ) -> context.Context: """ + Sets up everything needed Replace the placeholders in the dag/config against the variables file. Attach the secrets_handler, run_log_store, catalog_handler to the executor and return it. @@ -53,11 +54,17 @@ def prepare_configurations( variables = utils.gather_variables() templated_configuration = {} - configuration_file = os.environ.get("RUNNABLE_CONFIGURATION_FILE", configuration_file) + configuration_file = os.environ.get( + "RUNNABLE_CONFIGURATION_FILE", configuration_file + ) if configuration_file: templated_configuration = utils.load_yaml(configuration_file) or {} + # Since all the services (run_log_store, catalog, secrets, executor) are + # dynamically loaded via stevedore, we cannot validate the configuration + # before they are passed to the service. + configuration: RunnableConfig = cast(RunnableConfig, templated_configuration) logger.info(f"Resolved configurations: {configuration}") @@ -65,23 +72,32 @@ def prepare_configurations( # Run log settings, configuration over-rides everything run_log_config: Optional[ServiceConfig] = configuration.get("run_log_store", None) if not run_log_config: - run_log_config = cast(ServiceConfig, runnable_defaults.get("run_log_store", defaults.DEFAULT_RUN_LOG_STORE)) + run_log_config = cast( + ServiceConfig, + runnable_defaults.get("run_log_store", defaults.DEFAULT_RUN_LOG_STORE), + ) run_log_store = utils.get_provider_by_name_and_type("run_log_store", run_log_config) # Catalog handler settings, configuration over-rides everything catalog_config: Optional[ServiceConfig] = configuration.get("catalog", None) if not catalog_config: - catalog_config = cast(ServiceConfig, runnable_defaults.get("catalog", defaults.DEFAULT_CATALOG)) + catalog_config = cast( + ServiceConfig, runnable_defaults.get("catalog", defaults.DEFAULT_CATALOG) + ) catalog_handler = utils.get_provider_by_name_and_type("catalog", catalog_config) # Secret handler settings, configuration over-rides everything secrets_config: Optional[ServiceConfig] = configuration.get("secrets", None) if not secrets_config: - secrets_config = cast(ServiceConfig, runnable_defaults.get("secrets", defaults.DEFAULT_SECRETS)) + secrets_config = cast( + ServiceConfig, runnable_defaults.get("secrets", defaults.DEFAULT_SECRETS) + ) secrets_handler = utils.get_provider_by_name_and_type("secrets", secrets_config) # pickler - pickler_config = cast(ServiceConfig, runnable_defaults.get("pickler", defaults.DEFAULT_PICKLER)) + pickler_config = cast( + ServiceConfig, runnable_defaults.get("pickler", defaults.DEFAULT_PICKLER) + ) pickler_handler = utils.get_provider_by_name_and_type("pickler", pickler_config) # executor configurations, configuration over rides everything @@ -90,8 +106,12 @@ def prepare_configurations( executor_config = ServiceConfig(type="local", config={}) if not executor_config: - executor_config = cast(ServiceConfig, runnable_defaults.get("executor", defaults.DEFAULT_EXECUTOR)) - configured_executor = utils.get_provider_by_name_and_type("executor", executor_config) + executor_config = cast( + ServiceConfig, runnable_defaults.get("executor", defaults.DEFAULT_EXECUTOR) + ) + configured_executor = utils.get_provider_by_name_and_type( + "executor", executor_config + ) # Construct the context run_context = context.Context( @@ -174,20 +194,26 @@ def execute( run_context.execution_plan = defaults.EXECUTION_PLAN.CHAINED.value - utils.set_runnable_environment_variables(run_id=run_id, configuration_file=configuration_file, tag=tag) + utils.set_runnable_environment_variables( + run_id=run_id, configuration_file=configuration_file, tag=tag + ) # Prepare for graph execution executor.prepare_for_graph_execution() logger.info(f"Executing the graph: {run_context.dag}") with Progress( - TextColumn("[progress.description]{task.description}", table_column=Column(ratio=2)), + TextColumn( + "[progress.description]{task.description}", table_column=Column(ratio=2) + ), BarColumn(table_column=Column(ratio=1), style="dark_orange"), TimeElapsedColumn(table_column=Column(ratio=1)), console=console, expand=True, ) as progress: - pipeline_execution_task = progress.add_task("[dark_orange] Starting execution .. ", total=1) + pipeline_execution_task = progress.add_task( + "[dark_orange] Starting execution .. ", total=1 + ) try: run_context.progress = progress executor.execute_graph(dag=run_context.dag) # type: ignore @@ -197,16 +223,30 @@ def execute( executor.send_return_code(stage="traversal") return - run_log = run_context.run_log_store.get_run_log_by_id(run_id=run_context.run_id, full=False) + run_log = run_context.run_log_store.get_run_log_by_id( + run_id=run_context.run_id, full=False + ) if run_log.status == defaults.SUCCESS: - progress.update(pipeline_execution_task, description="[green] Success", completed=True) + progress.update( + pipeline_execution_task, + description="[green] Success", + completed=True, + ) else: - progress.update(pipeline_execution_task, description="[red] Failed", completed=True) + progress.update( + pipeline_execution_task, description="[red] Failed", completed=True + ) except Exception as e: # noqa: E722 console.print(e, style=defaults.error_style) - progress.update(pipeline_execution_task, description="[red] Errored execution", completed=True) - run_log = run_context.run_log_store.get_run_log_by_id(run_id=run_context.run_id, full=False) + progress.update( + pipeline_execution_task, + description="[red] Errored execution", + completed=True, + ) + run_log = run_context.run_log_store.get_run_log_by_id( + run_id=run_context.run_id, full=False + ) run_log.status = defaults.FAIL run_context.run_log_store.add_branch_log(run_log, run_context.run_id) raise e @@ -240,9 +280,13 @@ def execute_single_node( """ from runnable import nodes - task_console.print(f"Executing the single node: {step_name} with map variable: {map_variable}") + task_console.print( + f"Executing the single node: {step_name} with map variable: {map_variable}" + ) - configuration_file = os.environ.get("RUNNABLE_CONFIGURATION_FILE", configuration_file) + configuration_file = os.environ.get( + "RUNNABLE_CONFIGURATION_FILE", configuration_file + ) run_context = prepare_configurations( configuration_file=configuration_file, @@ -257,7 +301,9 @@ def execute_single_node( executor = run_context.executor run_context.execution_plan = defaults.EXECUTION_PLAN.CHAINED.value - utils.set_runnable_environment_variables(run_id=run_id, configuration_file=configuration_file, tag=tag) + utils.set_runnable_environment_variables( + run_id=run_id, configuration_file=configuration_file, tag=tag + ) executor.prepare_for_node_execution() @@ -271,7 +317,9 @@ def execute_single_node( map_variable_dict = utils.json_to_ordered_dict(map_variable) step_internal_name = nodes.BaseNode._get_internal_name_from_command_name(step_name) - node_to_execute, _ = graph.search_node_by_internal_name(run_context.dag, step_internal_name) + node_to_execute, _ = graph.search_node_by_internal_name( + run_context.dag, step_internal_name + ) logger.info("Executing the single node of : %s", node_to_execute) ## This step is where we save the log file @@ -316,7 +364,9 @@ def execute_notebook( executor = run_context.executor run_context.execution_plan = defaults.EXECUTION_PLAN.UNCHAINED.value - utils.set_runnable_environment_variables(run_id=run_id, configuration_file=configuration_file, tag=tag) + utils.set_runnable_environment_variables( + run_id=run_id, configuration_file=configuration_file, tag=tag + ) console.print("Working with context:") console.print(run_context) @@ -336,17 +386,25 @@ def execute_notebook( # Prepare for graph execution executor.prepare_for_graph_execution() - logger.info("Executing the job from the user. We are still in the caller's compute environment") + logger.info( + "Executing the job from the user. We are still in the caller's compute environment" + ) executor.execute_job(node=node) elif entrypoint == defaults.ENTRYPOINT.SYSTEM.value: executor.prepare_for_node_execution() - logger.info("Executing the job from the system. We are in the config's compute environment") + logger.info( + "Executing the job from the system. We are in the config's compute environment" + ) executor.execute_node(node=node) # Update the status of the run log - step_log = run_context.run_log_store.get_step_log(node._get_step_log_name(), run_id) - run_context.run_log_store.update_run_log_status(run_id=run_id, status=step_log.status) + step_log = run_context.run_log_store.get_step_log( + node._get_step_log_name(), run_id + ) + run_context.run_log_store.update_run_log_status( + run_id=run_id, status=step_log.status + ) else: raise ValueError(f"Invalid entrypoint {entrypoint}") @@ -379,7 +437,9 @@ def execute_function( executor = run_context.executor run_context.execution_plan = defaults.EXECUTION_PLAN.UNCHAINED.value - utils.set_runnable_environment_variables(run_id=run_id, configuration_file=configuration_file, tag=tag) + utils.set_runnable_environment_variables( + run_id=run_id, configuration_file=configuration_file, tag=tag + ) console.print("Working with context:") console.print(run_context) @@ -399,17 +459,25 @@ def execute_function( # Prepare for graph execution executor.prepare_for_graph_execution() - logger.info("Executing the job from the user. We are still in the caller's compute environment") + logger.info( + "Executing the job from the user. We are still in the caller's compute environment" + ) executor.execute_job(node=node) elif entrypoint == defaults.ENTRYPOINT.SYSTEM.value: executor.prepare_for_node_execution() - logger.info("Executing the job from the system. We are in the config's compute environment") + logger.info( + "Executing the job from the system. We are in the config's compute environment" + ) executor.execute_node(node=node) # Update the status of the run log - step_log = run_context.run_log_store.get_step_log(node._get_step_log_name(), run_id) - run_context.run_log_store.update_run_log_status(run_id=run_id, status=step_log.status) + step_log = run_context.run_log_store.get_step_log( + node._get_step_log_name(), run_id + ) + run_context.run_log_store.update_run_log_status( + run_id=run_id, status=step_log.status + ) else: raise ValueError(f"Invalid entrypoint {entrypoint}") @@ -444,7 +512,9 @@ def fan( """ from runnable import nodes - configuration_file = os.environ.get("RUNNABLE_CONFIGURATION_FILE", configuration_file) + configuration_file = os.environ.get( + "RUNNABLE_CONFIGURATION_FILE", configuration_file + ) run_context = prepare_configurations( configuration_file=configuration_file, @@ -459,12 +529,17 @@ def fan( executor = run_context.executor run_context.execution_plan = defaults.EXECUTION_PLAN.CHAINED.value - utils.set_runnable_environment_variables(run_id=run_id, configuration_file=configuration_file, tag=tag) + utils.set_runnable_environment_variables( + run_id=run_id, configuration_file=configuration_file, tag=tag + ) executor.prepare_for_node_execution() step_internal_name = nodes.BaseNode._get_internal_name_from_command_name(step_name) - node_to_execute, _ = graph.search_node_by_internal_name(run_context.dag, step_internal_name) # type: ignore + node_to_execute, _ = graph.search_node_by_internal_name( + run_context.dag, # type: ignore + step_internal_name, + ) map_variable_dict = utils.json_to_ordered_dict(map_variable) diff --git a/runnable/exceptions.py b/runnable/exceptions.py index 61f57182..e528c9b6 100644 --- a/runnable/exceptions.py +++ b/runnable/exceptions.py @@ -31,7 +31,9 @@ class StepLogNotFoundError(Exception): # pragma: no cover def __init__(self, run_id, name): super().__init__() - self.message = f"Step log for {name} is not found in the datastore for Run id: {run_id}" + self.message = ( + f"Step log for {name} is not found in the datastore for Run id: {run_id}" + ) class BranchLogNotFoundError(Exception): # pragma: no cover @@ -43,7 +45,9 @@ class BranchLogNotFoundError(Exception): # pragma: no cover def __init__(self, run_id, name): super().__init__() - self.message = f"Branch log for {name} is not found in the datastore for Run id: {run_id}" + self.message = ( + f"Branch log for {name} is not found in the datastore for Run id: {run_id}" + ) class NodeNotFoundError(Exception): # pragma: no cover diff --git a/runnable/executor.py b/runnable/executor.py index 5eb8a9c7..f8deced0 100644 --- a/runnable/executor.py +++ b/runnable/executor.py @@ -14,7 +14,7 @@ from runnable.graph import Graph if TYPE_CHECKING: # pragma: no cover - from runnable.extensions.nodes import TaskNode + from extensions.nodes.nodes import TaskNode from runnable.nodes import BaseNode logger = logging.getLogger(defaults.LOGGER_NAME) @@ -36,9 +36,12 @@ class BaseExecutor(ABC, BaseModel): overrides: dict = {} - _local: bool = False # This is a flag to indicate whether the executor is local or not. + _local: bool = ( + False # This is a flag to indicate whether the executor is local or not. + ) - _context_node = None # type: BaseNode + # TODO: Change this to _is_local + _context_node: Optional[BaseNode] = None model_config = ConfigDict(extra="forbid") @property @@ -90,7 +93,9 @@ def prepare_for_node_execution(self): ... @abstractmethod - def _sync_catalog(self, stage: str, synced_catalogs=None) -> Optional[List[DataCatalog]]: + def _sync_catalog( + self, stage: str, synced_catalogs=None + ) -> Optional[List[DataCatalog]]: """ 1). Identify the catalog settings by over-riding node settings with the global settings. 2). For stage = get: @@ -141,7 +146,13 @@ def step_attempt_number(self) -> int: return int(os.environ.get(defaults.ATTEMPT_NUMBER, 1)) @abstractmethod - def _execute_node(self, node: BaseNode, map_variable: TypeMapVariable = None, mock: bool = False, **kwargs): + def _execute_node( + self, + node: BaseNode, + map_variable: TypeMapVariable = None, + mock: bool = False, + **kwargs, + ): """ This is the entry point when we do the actual execution of the function. @@ -163,7 +174,9 @@ def _execute_node(self, node: BaseNode, map_variable: TypeMapVariable = None, mo ... @abstractmethod - def execute_node(self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs): + def execute_node( + self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs + ): """ The entry point for all executors apart from local. We have already prepared for node execution. @@ -191,7 +204,9 @@ def add_code_identities(self, node: BaseNode, step_log: StepLog, **kwargs): ... @abstractmethod - def execute_from_graph(self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs): + def execute_from_graph( + self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs + ): """ This is the entry point to from the graph execution. @@ -219,7 +234,9 @@ def execute_from_graph(self, node: BaseNode, map_variable: TypeMapVariable = Non ... @abstractmethod - def trigger_job(self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs): + def trigger_job( + self, node: BaseNode, map_variable: TypeMapVariable = None, **kwargs + ): """ Executor specific way of triggering jobs when runnable does both traversal and execution @@ -236,7 +253,9 @@ def trigger_job(self, node: BaseNode, map_variable: TypeMapVariable = None, **kw ... @abstractmethod - def _get_status_and_next_node_name(self, current_node: BaseNode, dag: Graph, map_variable: TypeMapVariable = None): + def _get_status_and_next_node_name( + self, current_node: BaseNode, dag: Graph, map_variable: TypeMapVariable = None + ): """ Given the current node and the graph, returns the name of the next node to execute. diff --git a/runnable/extensions/catalog/__init__.py b/runnable/extensions/catalog/__init__.py deleted file mode 100644 index bf50a4e9..00000000 --- a/runnable/extensions/catalog/__init__.py +++ /dev/null @@ -1,21 +0,0 @@ -from typing import List, Optional - -from runnable.datastore import DataCatalog - - -def is_catalog_out_of_sync(catalog, synced_catalogs=Optional[List[DataCatalog]]) -> bool: - """ - Check if the catalog items are out of sync from already cataloged objects. - If they are, return False. - If the object does not exist or synced catalog does not exist, return True - """ - if not synced_catalogs: - return True # If nothing has been synced in the past - - for synced_catalog in synced_catalogs: - if synced_catalog.catalog_relative_path == catalog.catalog_relative_path: - if synced_catalog.data_hash == catalog.data_hash: - return False - return True - - return True # The object does not exist, sync it diff --git a/runnable/extensions/catalog/k8s_pvc/implementation.py b/runnable/extensions/catalog/k8s_pvc/implementation.py deleted file mode 100644 index 010c35a5..00000000 --- a/runnable/extensions/catalog/k8s_pvc/implementation.py +++ /dev/null @@ -1,16 +0,0 @@ -import logging -from pathlib import Path - -from runnable import defaults -from runnable.extensions.catalog.file_system.implementation import FileSystemCatalog - -logger = logging.getLogger(defaults.LOGGER_NAME) - - -class K8sPVCatalog(FileSystemCatalog): - service_name: str = "k8s-pvc" - persistent_volume_name: str - mount_path: str - - def get_catalog_location(self): - return str(Path(self.mount_path) / self.catalog_location) diff --git a/runnable/extensions/catalog/k8s_pvc/integration.py b/runnable/extensions/catalog/k8s_pvc/integration.py deleted file mode 100644 index a88542c2..00000000 --- a/runnable/extensions/catalog/k8s_pvc/integration.py +++ /dev/null @@ -1,59 +0,0 @@ -import logging -from typing import cast - -from runnable import defaults -from runnable.integration import BaseIntegration - -logger = logging.getLogger(defaults.NAME) - - -class LocalCompute(BaseIntegration): - """ - Integration between local and k8's pvc - """ - - executor_type = "local" - service_type = "catalog" # One of secret, catalog, datastore - service_provider = "k8s-pvc" # The actual implementation of the service - - def validate(self, **kwargs): - msg = "We can't use the local compute k8s pvc store integration." - raise Exception(msg) - - -class LocalContainerCompute(BaseIntegration): - """ - Integration between local-container and k8's pvc - """ - - executor_type = "local-container" - service_type = "catalog" # One of secret, catalog, datastore - service_provider = "k8s-pvc" # The actual implementation of the service - - def validate(self, **kwargs): - msg = "We can't use the local-container compute k8s pvc store integration." - raise Exception(msg) - - -class ArgoCompute(BaseIntegration): - """ - Integration between argo and k8's pvc - """ - - executor_type = "argo" - service_type = "catalog" # One of secret, catalog, datastore - service_provider = "k8s-pvc" # The actual implementation of the service - - def configure_for_traversal(self, **kwargs): - from runnable.extensions.catalog.k8s_pvc.implementation import K8sPVCatalog - from runnable.extensions.executor.argo.implementation import ArgoExecutor, UserVolumeMounts - - self.executor = cast(ArgoExecutor, self.executor) - self.service = cast(K8sPVCatalog, self.service) - - volume_mount = UserVolumeMounts( - name=self.service.persistent_volume_name, - mount_path=self.service.mount_path, - ) - - self.executor.persistent_volumes.append(volume_mount) diff --git a/runnable/extensions/run_log_store/__init__.py b/runnable/extensions/run_log_store/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/runnable/extensions/run_log_store/chunked_file_system/__init__.py b/runnable/extensions/run_log_store/chunked_file_system/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/runnable/extensions/run_log_store/chunked_k8s_pvc/__init__.py b/runnable/extensions/run_log_store/chunked_k8s_pvc/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/runnable/extensions/run_log_store/chunked_k8s_pvc/implementation.py b/runnable/extensions/run_log_store/chunked_k8s_pvc/implementation.py deleted file mode 100644 index a6876732..00000000 --- a/runnable/extensions/run_log_store/chunked_k8s_pvc/implementation.py +++ /dev/null @@ -1,21 +0,0 @@ -import logging -from pathlib import Path - -from runnable import defaults -from runnable.extensions.run_log_store.chunked_file_system.implementation import ChunkedFileSystemRunLogStore - -logger = logging.getLogger(defaults.NAME) - - -class ChunkedK8PersistentVolumeRunLogstore(ChunkedFileSystemRunLogStore): - """ - Uses the K8s Persistent Volumes to store run logs. - """ - - service_name: str = "chunked-k8s-pvc" - persistent_volume_name: str - mount_path: str - - @property - def log_folder_name(self) -> str: - return str(Path(self.mount_path) / self.log_folder) diff --git a/runnable/extensions/run_log_store/chunked_k8s_pvc/integration.py b/runnable/extensions/run_log_store/chunked_k8s_pvc/integration.py deleted file mode 100644 index f3ab736b..00000000 --- a/runnable/extensions/run_log_store/chunked_k8s_pvc/integration.py +++ /dev/null @@ -1,61 +0,0 @@ -import logging -from typing import cast - -from runnable import defaults -from runnable.integration import BaseIntegration - -logger = logging.getLogger(defaults.NAME) - - -class LocalCompute(BaseIntegration): - """ - Integration between local and k8's pvc - """ - - executor_type = "local" - service_type = "run_log_store" # One of secret, catalog, datastore - service_provider = "chunked-k8s-pvc" # The actual implementation of the service - - def validate(self, **kwargs): - msg = "We can't use the local compute k8s pvc store integration." - raise Exception(msg) - - -class LocalContainerCompute(BaseIntegration): - """ - Integration between local-container and k8's pvc - """ - - executor_type = "local-container" - service_type = "run_log_store" # One of secret, catalog, datastore - service_provider = "chunked-k8s-pvc" # The actual implementation of the service - - def validate(self, **kwargs): - msg = "We can't use the local-container compute k8s pvc store integration." - raise Exception(msg) - - -class ArgoCompute(BaseIntegration): - """ - Integration between argo and k8's pvc - """ - - executor_type = "argo" - service_type = "run_log_store" # One of secret, catalog, datastore - service_provider = "chunked-k8s-pvc" # The actual implementation of the service - - def configure_for_traversal(self, **kwargs): - from runnable.extensions.executor.argo.implementation import ArgoExecutor, UserVolumeMounts - from runnable.extensions.run_log_store.chunked_k8s_pvc.implementation import ( - ChunkedK8PersistentVolumeRunLogstore, - ) - - self.executor = cast(ArgoExecutor, self.executor) - self.service = cast(ChunkedK8PersistentVolumeRunLogstore, self.service) - - volume_mount = UserVolumeMounts( - name=self.service.persistent_volume_name, - mount_path=self.service.mount_path, - ) - - self.executor.persistent_volumes.append(volume_mount) diff --git a/runnable/extensions/run_log_store/file_system/__init__.py b/runnable/extensions/run_log_store/file_system/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/runnable/extensions/run_log_store/k8s_pvc/__init__.py b/runnable/extensions/run_log_store/k8s_pvc/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/runnable/extensions/run_log_store/k8s_pvc/implementation.py b/runnable/extensions/run_log_store/k8s_pvc/implementation.py deleted file mode 100644 index c3e544bb..00000000 --- a/runnable/extensions/run_log_store/k8s_pvc/implementation.py +++ /dev/null @@ -1,21 +0,0 @@ -import logging -from pathlib import Path - -from runnable import defaults -from runnable.extensions.run_log_store.file_system.implementation import FileSystemRunLogstore - -logger = logging.getLogger(defaults.NAME) - - -class K8PersistentVolumeRunLogstore(FileSystemRunLogstore): - """ - Uses the K8s Persistent Volumes to store run logs. - """ - - service_name: str = "k8s-pvc" - persistent_volume_name: str - mount_path: str - - @property - def log_folder_name(self) -> str: - return str(Path(self.mount_path) / self.log_folder) diff --git a/runnable/extensions/run_log_store/k8s_pvc/integration.py b/runnable/extensions/run_log_store/k8s_pvc/integration.py deleted file mode 100644 index 5153e843..00000000 --- a/runnable/extensions/run_log_store/k8s_pvc/integration.py +++ /dev/null @@ -1,56 +0,0 @@ -import logging -from typing import cast - -from runnable import defaults -from runnable.integration import BaseIntegration - -logger = logging.getLogger(defaults.NAME) - - -class LocalCompute(BaseIntegration): - """ - Integration between local and k8's pvc - """ - - executor_type = "local" - service_type = "run_log_store" # One of secret, catalog, datastore - service_provider = "k8s-pvc" # The actual implementation of the service - - def validate(self, **kwargs): - msg = "We can't use the local compute k8s pvc store integration." - raise Exception(msg) - - -class LocalContainerCompute(BaseIntegration): - """ - Integration between local-container and k8's pvc - """ - - executor_type = "local-container" - service_type = "run_log_store" # One of secret, catalog, datastore - service_provider = "k8s-pvc" # The actual implementation of the service - - def validate(self, **kwargs): - msg = "We can't use the local-container compute k8s pvc store integration." - raise Exception(msg) - - -class ArgoCompute(BaseIntegration): - """ - Integration between argo and k8's pvc - """ - - executor_type = "argo" - service_type = "run_log_store" # One of secret, catalog, datastore - service_provider = "k8s-pvc" # The actual implementation of the service - - def configure_for_traversal(self, **kwargs): - from runnable.extensions.executor.argo.implementation import ArgoExecutor, UserVolumeMounts - from runnable.extensions.run_log_store.k8s_pvc.implementation import K8PersistentVolumeRunLogstore - - self.executor = cast(ArgoExecutor, self.executor) - self.service = cast(K8PersistentVolumeRunLogstore, self.service) - - volume_mount = UserVolumeMounts(name=self.service.persistent_volume_name, mount_path=self.service.mount_path) - - self.executor.persistent_volumes.append(volume_mount) diff --git a/runnable/extensions/secrets/__init__.py b/runnable/extensions/secrets/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/runnable/extensions/secrets/dotenv/__init__.py b/runnable/extensions/secrets/dotenv/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/runnable/extensions/secrets/dotenv/implementation.py b/runnable/extensions/secrets/dotenv/implementation.py deleted file mode 100644 index acce276f..00000000 --- a/runnable/extensions/secrets/dotenv/implementation.py +++ /dev/null @@ -1,100 +0,0 @@ -import logging -import os - -from runnable import defaults, exceptions, utils -from runnable.secrets import BaseSecrets - -logger = logging.getLogger(defaults.LOGGER_NAME) - - -class DotEnvSecrets(BaseSecrets): - """ - A secret manager which uses .env files for secrets. - - We recommend this secrets manager only for local development and should not be used for anything close to - production. - """ - - service_name: str = "dotenv" - location: str = defaults.DOTENV_FILE_LOCATION - secrets: dict = {} - - @property - def secrets_location(self): - """ - Return the location of the .env file. - If the user has not over-ridden it, it defaults to .env file in the project root. - - Returns: - str: The location of the secrets file - """ - return self.location - - def _load_secrets(self): - """ - We assume that a dotenv file is of format, - key=value -> secrets[key]='value' - key=value# comment -> secrets[key1]='value1' - key=value2 # comment. -> secrets[key2]='value2' - - Any of the above formats with export or set in front of them. - - We strip the secret value of any empty spaces at the start and end. - - Raises: - Exception: If the file at secrets_location is not found. - Exception: If the secrets are not formatted correctly. - """ - # It was loaded in the previous call and need not to be reloaded - if self.secrets: - return - - secrets_location = self.secrets_location - if not utils.does_file_exist(secrets_location): - raise Exception(f"Did not find the secrets file in {secrets_location}") - - with open(secrets_location, "r") as fr: - for secret_line in fr: - # The order of removing fluff around the expression - # the new line - # the comment - # the white space - # Any export or set in front of the key any spaces after that. - - secret_line = secret_line.strip(os.linesep).split("#")[0].strip() - - if secret_line == "": - continue - - secret_line = utils.remove_prefix(secret_line, prefix="export").strip() - secret_line = utils.remove_prefix(secret_line, prefix="EXPORT").strip() - secret_line = utils.remove_prefix(secret_line, prefix="set").strip() - secret_line = utils.remove_prefix(secret_line, prefix="SET").strip() - - data = secret_line.split("=") - if len(data) != 2: - raise Exception("A secret should be of format, secret_name=secret_value[# any comment]") - - key, value = data - self.secrets[key] = value.strip().strip('"').strip(os.linesep) - - def get(self, name: str = "", **kwargs) -> str: - """ - Get a secret of name from the secrets file. - - - Args: - name (str): The name of the secret to retrieve - - Raises: - Exception: If the secret by the name is not found. - - Returns: - str: The value of the secret - """ - self._load_secrets() - - if name in self.secrets: - return self.secrets[name] - - raise exceptions.SecretNotFoundError(secret_name=name, secret_setting=self.secrets_location) diff --git a/runnable/graph.py b/runnable/graph.py index c7cb4284..bbfc8e3b 100644 --- a/runnable/graph.py +++ b/runnable/graph.py @@ -24,7 +24,9 @@ class Graph(BaseModel): name: str = "" description: Optional[str] = "" internal_branch_name: str = Field(default="", exclude=True) - nodes: SerializeAsAny[Dict[str, "BaseNode"]] = Field(default_factory=dict, serialization_alias="steps") + nodes: SerializeAsAny[Dict[str, "BaseNode"]] = Field( + default_factory=dict, serialization_alias="steps" + ) def get_summary(self) -> Dict[str, Any]: """ @@ -229,7 +231,9 @@ def is_dag(self) -> bool: return False return True - def is_cyclic_util(self, node: "BaseNode", visited: Dict[str, bool], recstack: Dict[str, bool]) -> bool: + def is_cyclic_util( + self, node: "BaseNode", visited: Dict[str, bool], recstack: Dict[str, bool] + ) -> bool: """ Recursive utility that determines if a node and neighbors has a cycle. Is used in is_dag method. @@ -327,7 +331,9 @@ def create_graph(dag_config: Dict[str, Any], internal_branch_name: str = "") -> Graph: The created graph object """ description: str = dag_config.get("description", None) - start_at: str = cast(str, dag_config.get("start_at")) # Let the start_at be relative to the graph + start_at: str = cast( + str, dag_config.get("start_at") + ) # Let the start_at be relative to the graph graph = Graph( start_at=start_at, @@ -339,7 +345,9 @@ def create_graph(dag_config: Dict[str, Any], internal_branch_name: str = "") -> for name, step_config in dag_config.get("steps", {}).items(): logger.info(f"Adding node {name} with :{step_config}") - node = create_node(name, step_config=step_config, internal_branch_name=internal_branch_name) + node = create_node( + name, step_config=step_config, internal_branch_name=internal_branch_name + ) graph.add_node(node) graph.add_terminal_nodes(internal_branch_name=internal_branch_name) @@ -369,8 +377,12 @@ def create_node(name: str, step_config: dict, internal_branch_name: Optional[str internal_name = internal_branch_name + "." + name try: - node_type = step_config.pop("type") # Remove the type as it is not used in node creation. - node_mgr: BaseNode = driver.DriverManager(namespace="nodes", name=node_type).driver + node_type = step_config.pop( + "type" + ) # Remove the type as it is not used in node creation. + node_mgr: BaseNode = driver.DriverManager( + namespace="nodes", name=node_type + ).driver next_node = step_config.pop("next", None) @@ -424,11 +436,18 @@ def search_node_by_internal_name(dag: Graph, internal_name: str): for i in range(len(dot_path)): if i % 2: # Its odd, so we are in brach name - current_branch = current_node._get_branch_by_name(".".join(dot_path[: i + 1])) # type: ignore - logger.debug(f"Finding step for {internal_name} in branch: {current_branch}") + + current_branch = current_node._get_branch_by_name( # type: ignore + ".".join(dot_path[: i + 1]) + ) + logger.debug( + f"Finding step for {internal_name} in branch: {current_branch}" + ) else: # Its even, so we are in Step, we start here! - current_node = current_branch.get_node_by_internal_name(".".join(dot_path[: i + 1])) + current_node = current_branch.get_node_by_internal_name( + ".".join(dot_path[: i + 1]) + ) logger.debug(f"Finding {internal_name} in node: {current_node}") logger.debug(f"current branch : {current_branch}, current step {current_node}") @@ -463,12 +482,18 @@ def search_branch_by_internal_name(dag: Graph, internal_name: str): for i in range(len(dot_path)): if i % 2: # Its odd, so we are in brach name - current_branch = current_node._get_branch_by_name(".".join(dot_path[: i + 1])) # type: ignore - logger.debug(f"Finding step for {internal_name} in branch: {current_branch}") + current_branch = current_node._get_branch_by_name( # type: ignore + ".".join(dot_path[: i + 1]) + ) + logger.debug( + f"Finding step for {internal_name} in branch: {current_branch}" + ) else: # Its even, so we are in Step, we start here! - current_node = current_branch.get_node_by_internal_name(".".join(dot_path[: i + 1])) + current_node = current_branch.get_node_by_internal_name( + ".".join(dot_path[: i + 1]) + ) logger.debug(f"Finding {internal_name} in node: {current_node}") logger.debug(f"current branch : {current_branch}, current step {current_node}") diff --git a/runnable/integration.py b/runnable/integration.py index d9794fef..8014f87f 100644 --- a/runnable/integration.py +++ b/runnable/integration.py @@ -49,7 +49,9 @@ def configure_for_execution(self, **kwargs): # --8<-- [end:docs] -def get_integration_handler(executor: "BaseExecutor", service: object) -> BaseIntegration: +def get_integration_handler( + executor: "BaseExecutor", service: object +) -> BaseIntegration: """ Return the integration handler between executor and the service. @@ -147,6 +149,7 @@ def configure_for_execution(executor: "BaseExecutor", service: object, **kwargs) integration_handler.configure_for_execution(**kwargs) +# TODO: Move all of these to the proper locations class BufferedRunLogStore(BaseIntegration): """ Integration between any executor and buffered run log store @@ -157,7 +160,9 @@ class BufferedRunLogStore(BaseIntegration): def validate(self, **kwargs): if not self.executor.service_name == "local": - raise Exception("Buffered run log store is only supported for local executor") + raise Exception( + "Buffered run log store is only supported for local executor" + ) msg = ( "Run log generated by buffered run log store are not persisted. " diff --git a/runnable/nodes.py b/runnable/nodes.py index b6787887..f00c1788 100644 --- a/runnable/nodes.py +++ b/runnable/nodes.py @@ -51,7 +51,9 @@ def validate_name(cls, name: str): raise ValueError("Node names cannot have . or '%' in them") return name - def _command_friendly_name(self, replace_with=defaults.COMMAND_FRIENDLY_CHARACTER) -> str: + def _command_friendly_name( + self, replace_with=defaults.COMMAND_FRIENDLY_CHARACTER + ) -> str: """ Replace spaces with special character for spaces. Spaces in the naming of the node is convenient for the user but causes issues when used programmatically. @@ -76,7 +78,9 @@ def _get_internal_name_from_command_name(cls, command_name: str) -> str: return command_name.replace(defaults.COMMAND_FRIENDLY_CHARACTER, " ") @classmethod - def _resolve_map_placeholders(cls, name: str, map_variable: TypeMapVariable = None) -> str: + def _resolve_map_placeholders( + cls, name: str, map_variable: TypeMapVariable = None + ) -> str: """ If there is no map step used, then we just return the name as we find it. @@ -141,7 +145,9 @@ def _get_step_log_name(self, map_variable: TypeMapVariable = None) -> str: Returns: str: The dot path name of the step log name """ - return self._resolve_map_placeholders(self.internal_name, map_variable=map_variable) + return self._resolve_map_placeholders( + self.internal_name, map_variable=map_variable + ) def _get_branch_log_name(self, map_variable: TypeMapVariable = None) -> str: """ @@ -158,7 +164,9 @@ def _get_branch_log_name(self, map_variable: TypeMapVariable = None) -> str: Returns: str: The dot path name of the branch log """ - return self._resolve_map_placeholders(self.internal_branch_name, map_variable=map_variable) + return self._resolve_map_placeholders( + self.internal_branch_name, map_variable=map_variable + ) def __str__(self) -> str: # pragma: no cover """ @@ -180,7 +188,6 @@ def _get_on_failure_node(self) -> str: str: The on_failure node defined by the dag or '' This is a base implementation which the BaseNode does not satisfy """ - ... @abstractmethod def _get_next_node(self) -> str: @@ -190,7 +197,6 @@ def _get_next_node(self) -> str: Returns: str: The node name, relative to the dag, as defined by the config """ - ... @abstractmethod def _is_terminal_node(self) -> bool: @@ -200,7 +206,6 @@ def _is_terminal_node(self) -> bool: Returns: bool: True or False of whether there is next node. """ - ... @abstractmethod def _get_catalog_settings(self) -> Dict[str, Any]: @@ -210,7 +215,6 @@ def _get_catalog_settings(self) -> Dict[str, Any]: Returns: dict: catalog settings defined as per the node or None """ - ... @abstractmethod def _get_branch_by_name(self, branch_name: str): @@ -225,7 +229,6 @@ def _get_branch_by_name(self, branch_name: str): Raises: Exception: [description] """ - ... def _get_neighbors(self) -> List[str]: """ @@ -261,7 +264,6 @@ def _get_executor_config(self, executor_type: str) -> str: Returns: dict: The executor config, if defined or an empty dict """ - ... @abstractmethod def _get_max_attempts(self) -> int: @@ -271,7 +273,6 @@ def _get_max_attempts(self) -> int: Returns: int: The number of maximum retries as defined by the config or 1. """ - ... @abstractmethod def execute( @@ -296,7 +297,6 @@ def execute( Raises: NotImplementedError: Base class, hence not implemented. """ - ... @abstractmethod def execute_as_graph(self, map_variable: TypeMapVariable = None, **kwargs): @@ -312,7 +312,6 @@ def execute_as_graph(self, map_variable: TypeMapVariable = None, **kwargs): Raises: NotImplementedError: Base class, hence not implemented. """ - ... @abstractmethod def fan_out(self, map_variable: TypeMapVariable = None, **kwargs): @@ -329,7 +328,6 @@ def fan_out(self, map_variable: TypeMapVariable = None, **kwargs): Raises: Exception: If the node is not a composite node. """ - ... @abstractmethod def fan_in(self, map_variable: TypeMapVariable = None, **kwargs): @@ -346,7 +344,6 @@ def fan_in(self, map_variable: TypeMapVariable = None, **kwargs): Raises: Exception: If the node is not a composite node. """ - ... @classmethod @abstractmethod @@ -360,7 +357,6 @@ def parse_from_config(cls, config: Dict[str, Any]) -> "BaseNode": Returns: BaseNode: The corresponding node. """ - ... @abstractmethod def get_summary(self) -> Dict[str, Any]: @@ -471,7 +467,9 @@ def execute( attempt_number: int = 1, **kwargs, ) -> StepLog: - raise Exception("This is a composite node and does not have an execute function") + raise Exception( + "This is a composite node and does not have an execute function" + ) class TerminalNode(BaseNode): diff --git a/runnable/parameters.py b/runnable/parameters.py index d1767644..801dc88d 100644 --- a/runnable/parameters.py +++ b/runnable/parameters.py @@ -15,6 +15,8 @@ logger = logging.getLogger(defaults.LOGGER_NAME) +# TODO: Revisit this, it might be a bit too complicated than required + def get_user_set_parameters(remove: bool = False) -> Dict[str, JsonParameter]: """ @@ -34,9 +36,13 @@ def get_user_set_parameters(remove: bool = False) -> Dict[str, JsonParameter]: if env_var.startswith(defaults.PARAMETER_PREFIX): key = remove_prefix(env_var, defaults.PARAMETER_PREFIX) try: - parameters[key.lower()] = JsonParameter(kind="json", value=json.loads(value)) + parameters[key.lower()] = JsonParameter( + kind="json", value=json.loads(value) + ) except json.decoder.JSONDecodeError: - logger.warning(f"Parameter {key} could not be JSON decoded, adding the literal value") + logger.warning( + f"Parameter {key} could not be JSON decoded, adding the literal value" + ) parameters[key.lower()] = JsonParameter(kind="json", value=value) if remove: @@ -52,7 +58,9 @@ def serialize_parameter_as_str(value: Any) -> str: def filter_arguments_for_func( - func: Callable[..., Any], params: Dict[str, Any], map_variable: TypeMapVariable = None + func: Callable[..., Any], + params: Dict[str, Any], + map_variable: TypeMapVariable = None, ) -> Dict[str, Any]: """ Inspects the function to be called as part of the pipeline to find the arguments of the function. @@ -96,11 +104,16 @@ def filter_arguments_for_func( # No parameter of this name was provided if value.default == inspect.Parameter.empty: # No default value is given in the function signature. error as parameter is required. - raise ValueError(f"Parameter {name} is required for {func.__name__} but not provided") + raise ValueError( + f"Parameter {name} is required for {func.__name__} but not provided" + ) # default value is given in the function signature, nothing further to do. continue - if type(value.annotation) in [BaseModel, pydantic._internal._model_construction.ModelMetaclass]: + if type(value.annotation) in [ + BaseModel, + pydantic._internal._model_construction.ModelMetaclass, + ]: # We try to cast it as a pydantic model if asked named_param = params[name].get_value() @@ -110,7 +123,9 @@ def filter_arguments_for_func( bound_model = bind_args_for_pydantic_model(named_param, value.annotation) bound_args[name] = bound_model - unassigned_params = unassigned_params.difference(bound_model.model_fields.keys()) + unassigned_params = unassigned_params.difference( + bound_model.model_fields.keys() + ) elif value.annotation in [str, int, float, bool]: # Cast it if its a primitive type. Ensure the type matches the annotation. @@ -120,12 +135,16 @@ def filter_arguments_for_func( unassigned_params.remove(name) - params = {key: params[key] for key in unassigned_params} # remove keys from params if they are assigned + params = { + key: params[key] for key in unassigned_params + } # remove keys from params if they are assigned return bound_args -def bind_args_for_pydantic_model(params: Dict[str, Any], model: Type[BaseModel]) -> BaseModel: +def bind_args_for_pydantic_model( + params: Dict[str, Any], model: Type[BaseModel] +) -> BaseModel: class EasyModel(model): # type: ignore model_config = ConfigDict(extra="ignore") diff --git a/runnable/pickler.py b/runnable/pickler.py index 7d2306b0..8595596a 100644 --- a/runnable/pickler.py +++ b/runnable/pickler.py @@ -9,7 +9,7 @@ class BasePickler(ABC, BaseModel): """ - The base class for all picklers. + The base class for all pickler. We are still in the process of hardening the design of this class. For now, we are just going to use pickle. diff --git a/runnable/sdk.py b/runnable/sdk.py index 41c92664..721cc625 100644 --- a/runnable/sdk.py +++ b/runnable/sdk.py @@ -26,8 +26,7 @@ from rich.table import Column from typing_extensions import Self -from runnable import console, defaults, entrypoints, exceptions, graph, utils -from runnable.extensions.nodes import ( +from extensions.nodes.nodes import ( FailNode, MapNode, ParallelNode, @@ -35,9 +34,12 @@ SuccessNode, TaskNode, ) +from runnable import console, defaults, entrypoints, exceptions, graph, utils from runnable.nodes import TraversalNode from runnable.tasks import TaskReturns +# TODO: This might have to be an extension + logger = logging.getLogger(defaults.LOGGER_NAME) StepType = Union["Stub", "PythonTask", "NotebookTask", "ShellTask", "Parallel", "Map"] @@ -66,7 +68,9 @@ class Catalog(BaseModel): """ - model_config = ConfigDict(extra="forbid") # Need to be for command, would be validated later + model_config = ConfigDict( + extra="forbid" + ) # Need to be for command, would be validated later # Note: compute_data_folder was confusing to explain, might be introduced later. # compute_data_folder: str = Field(default="", alias="compute_data_folder") get: List[str] = Field(default_factory=list, alias="get") @@ -95,14 +99,18 @@ def __hash__(self): def __rshift__(self, other: StepType) -> StepType: if self.next_node: - raise Exception(f"The node {self} already has a next node: {self.next_node}") + raise Exception( + f"The node {self} already has a next node: {self.next_node}" + ) self.next_node = other.name return other def __lshift__(self, other: TraversalNode) -> TraversalNode: if other.next_node: - raise Exception(f"The {other} node already has a next node: {other.next_node}") + raise Exception( + f"The {other} node already has a next node: {other.next_node}" + ) other.next_node = self.name return other @@ -112,7 +120,9 @@ def depends_on(self, node: StepType) -> Self: assert not isinstance(node, Fail) if node.next_node: - raise Exception(f"The {node} node already has a next node: {node.next_node}") + raise Exception( + f"The {node} node already has a next node: {node.next_node}" + ) node.next_node = self.name return self @@ -124,7 +134,9 @@ def validate_terminations(self) -> Self: if self.terminate_with_failure or self.terminate_with_success: if self.next_node and self.next_node not in ["success", "fail"]: - raise AssertionError("A node being terminated cannot have a user defined next node") + raise AssertionError( + "A node being terminated cannot have a user defined next node" + ) if self.terminate_with_failure: self.next_node = "fail" @@ -135,8 +147,7 @@ def validate_terminations(self) -> Self: return self @abstractmethod - def create_node(self) -> TraversalNode: - ... + def create_node(self) -> TraversalNode: ... class BaseTask(BaseTraversal): @@ -146,12 +157,16 @@ class BaseTask(BaseTraversal): catalog: Optional[Catalog] = Field(default=None, alias="catalog") overrides: Dict[str, Any] = Field(default_factory=dict, alias="overrides") - returns: List[Union[str, TaskReturns]] = Field(default_factory=list, alias="returns") + returns: List[Union[str, TaskReturns]] = Field( + default_factory=list, alias="returns" + ) secrets: List[str] = Field(default_factory=list) @field_validator("returns", mode="before") @classmethod - def serialize_returns(cls, returns: List[Union[str, TaskReturns]]) -> List[TaskReturns]: + def serialize_returns( + cls, returns: List[Union[str, TaskReturns]] + ) -> List[TaskReturns]: task_returns = [] for x in returns: @@ -167,9 +182,13 @@ def serialize_returns(cls, returns: List[Union[str, TaskReturns]]) -> List[TaskR def create_node(self) -> TaskNode: if not self.next_node: if not (self.terminate_with_failure or self.terminate_with_success): - raise AssertionError("A node not being terminated must have a user defined next node") + raise AssertionError( + "A node not being terminated must have a user defined next node" + ) - return TaskNode.parse_from_config(self.model_dump(exclude_none=True, by_alias=True)) + return TaskNode.parse_from_config( + self.model_dump(exclude_none=True, by_alias=True) + ) class PythonTask(BaseTask): @@ -326,7 +345,9 @@ class NotebookTask(BaseTask): """ notebook: str = Field(serialization_alias="command") - optional_ploomber_args: Optional[Dict[str, Any]] = Field(default=None, alias="optional_ploomber_args") + optional_ploomber_args: Optional[Dict[str, Any]] = Field( + default=None, alias="optional_ploomber_args" + ) @computed_field def command_type(self) -> str: @@ -416,7 +437,9 @@ class Stub(BaseTraversal): def create_node(self) -> StubNode: if not self.next_node: if not (self.terminate_with_failure or self.terminate_with_success): - raise AssertionError("A node not being terminated must have a user defined next node") + raise AssertionError( + "A node not being terminated must have a user defined next node" + ) return StubNode.parse_from_config(self.model_dump(exclude_none=True)) @@ -439,14 +462,23 @@ class Parallel(BaseTraversal): @computed_field # type: ignore @property def graph_branches(self) -> Dict[str, graph.Graph]: - return {name: pipeline._dag.model_copy() for name, pipeline in self.branches.items()} + return { + name: pipeline._dag.model_copy() for name, pipeline in self.branches.items() + } def create_node(self) -> ParallelNode: if not self.next_node: if not (self.terminate_with_failure or self.terminate_with_success): - raise AssertionError("A node not being terminated must have a user defined next node") + raise AssertionError( + "A node not being terminated must have a user defined next node" + ) - node = ParallelNode(name=self.name, branches=self.graph_branches, internal_name="", next_node=self.next_node) + node = ParallelNode( + name=self.name, + branches=self.graph_branches, + internal_name="", + next_node=self.next_node, + ) return node @@ -483,7 +515,9 @@ def graph_branch(self) -> graph.Graph: def create_node(self) -> MapNode: if not self.next_node: if not (self.terminate_with_failure or self.terminate_with_success): - raise AssertionError("A node not being terminated must have a user defined next node") + raise AssertionError( + "A node not being terminated must have a user defined next node" + ) node = MapNode( name=self.name, @@ -596,16 +630,22 @@ def _validate_path(self, path: List[StepType], failure_path: bool = False) -> No for step in path: if step.terminate_with_success: if reached_success: - raise Exception("A pipeline cannot have more than one step that terminates with success") + raise Exception( + "A pipeline cannot have more than one step that terminates with success" + ) reached_success = True continue if step.terminate_with_failure: if reached_failure: - raise Exception("A pipeline cannot have more than one step that terminates with failure") + raise Exception( + "A pipeline cannot have more than one step that terminates with failure" + ) reached_failure = True if not reached_success and not reached_failure: - raise Exception("A pipeline must have at least one step that terminates with success") + raise Exception( + "A pipeline must have at least one step that terminates with success" + ) def _construct_path(self, path: List[StepType]) -> None: prev_step = path[0] @@ -615,7 +655,9 @@ def _construct_path(self, path: List[StepType]) -> None: continue if prev_step.terminate_with_success or prev_step.terminate_with_failure: - raise Exception(f"A step that terminates with success/failure cannot have a next step: {prev_step}") + raise Exception( + f"A step that terminates with success/failure cannot have a next step: {prev_step}" + ) if prev_step.next_node and prev_step.next_node not in ["success", "fail"]: raise Exception(f"Step already has a next node: {prev_step} ") @@ -646,7 +688,9 @@ def model_post_init(self, __context: Any) -> None: on_failure_paths: List[List[StepType]] = [] for step in self.steps: - if isinstance(step, (Stub, PythonTask, NotebookTask, ShellTask, Parallel, Map)): + if isinstance( + step, (Stub, PythonTask, NotebookTask, ShellTask, Parallel, Map) + ): success_path.append(step) continue # on_failure_paths.append(step) @@ -731,7 +775,9 @@ def execute( logger.setLevel(log_level) run_id = utils.generate_run_id(run_id=run_id) - configuration_file = os.environ.get("RUNNABLE_CONFIGURATION_FILE", configuration_file) + configuration_file = os.environ.get( + "RUNNABLE_CONFIGURATION_FILE", configuration_file + ) run_context = entrypoints.prepare_configurations( configuration_file=configuration_file, run_id=run_id, @@ -740,7 +786,9 @@ def execute( ) run_context.execution_plan = defaults.EXECUTION_PLAN.CHAINED.value - utils.set_runnable_environment_variables(run_id=run_id, configuration_file=configuration_file, tag=tag) + utils.set_runnable_environment_variables( + run_id=run_id, configuration_file=configuration_file, tag=tag + ) dag_definition = self._dag.model_dump(by_alias=True, exclude_none=True) @@ -767,7 +815,9 @@ def execute( with Progress( SpinnerColumn(spinner_name="runner"), - TextColumn("[progress.description]{task.description}", table_column=Column(ratio=2)), + TextColumn( + "[progress.description]{task.description}", table_column=Column(ratio=2) + ), BarColumn(table_column=Column(ratio=1), style="dark_orange"), TimeElapsedColumn(table_column=Column(ratio=1)), console=console, @@ -775,23 +825,41 @@ def execute( ) as progress: try: run_context.progress = progress - pipeline_execution_task = progress.add_task("[dark_orange] Starting execution .. ", total=1) + pipeline_execution_task = progress.add_task( + "[dark_orange] Starting execution .. ", total=1 + ) run_context.executor.execute_graph(dag=run_context.dag) if not run_context.executor._local: return {} - run_log = run_context.run_log_store.get_run_log_by_id(run_id=run_context.run_id, full=False) + run_log = run_context.run_log_store.get_run_log_by_id( + run_id=run_context.run_id, full=False + ) if run_log.status == defaults.SUCCESS: - progress.update(pipeline_execution_task, description="[green] Success", completed=True) + progress.update( + pipeline_execution_task, + description="[green] Success", + completed=True, + ) else: - progress.update(pipeline_execution_task, description="[red] Failed", completed=True) + progress.update( + pipeline_execution_task, + description="[red] Failed", + completed=True, + ) raise exceptions.ExecutionFailedError(run_context.run_id) except Exception as e: # noqa: E722 console.print(e, style=defaults.error_style) - progress.update(pipeline_execution_task, description="[red] Errored execution", completed=True) + progress.update( + pipeline_execution_task, + description="[red] Errored execution", + completed=True, + ) raise if run_context.executor._local: - return run_context.run_log_store.get_run_log_by_id(run_id=run_context.run_id) + return run_context.run_log_store.get_run_log_by_id( + run_id=run_context.run_id + ) diff --git a/runnable/secrets.py b/runnable/secrets.py index a8cd5ec1..e50416a8 100644 --- a/runnable/secrets.py +++ b/runnable/secrets.py @@ -92,4 +92,6 @@ def get(self, name: str, **kwargs) -> str: try: return os.environ[name] except KeyError: - raise exceptions.SecretNotFoundError(secret_name=name, secret_setting="environment variables") + raise exceptions.SecretNotFoundError( + secret_name=name, secret_setting="environment variables" + ) diff --git a/runnable/tasks.py b/runnable/tasks.py index a821a579..4d86c360 100644 --- a/runnable/tasks.py +++ b/runnable/tasks.py @@ -31,7 +31,7 @@ logging.getLogger("stevedore").setLevel(logging.CRITICAL) -# TODO: Can we add memory peak, cpu usage, etc. to the metrics? +# TODO: This has to be an extension class TaskReturns(BaseModel): @@ -43,8 +43,12 @@ class BaseTaskType(BaseModel): """A base task class which does the execution of command defined by the user.""" task_type: str = Field(serialization_alias="command_type") - secrets: List[str] = Field(default_factory=list) - returns: List[TaskReturns] = Field(default_factory=list, alias="returns") + secrets: List[str] = Field( + default_factory=list + ) # A list of secrets to expose by secrets manager + returns: List[TaskReturns] = Field( + default_factory=list, alias="returns" + ) # The return values of the task model_config = ConfigDict(extra="forbid") @@ -70,11 +74,13 @@ def get_cli_options(self) -> Tuple[str, dict]: raise NotImplementedError() def set_secrets_as_env_variables(self): + # Preparing the environment for the task execution for key in self.secrets: secret_value = context.run_context.secrets_handler.get(key) os.environ[key] = secret_value def delete_secrets_from_env_variables(self): + # Cleaning up the environment after the task execution for key in self.secrets: if key in os.environ: del os.environ[key] @@ -99,6 +105,7 @@ def execute_command( def _diff_parameters( self, parameters_in: Dict[str, Parameter], context_params: Dict[str, Parameter] ) -> Dict[str, Parameter]: + # If the parameter is different from existing parameters, then it is updated diff: Dict[str, Parameter] = {} for param_name, param in context_params.items(): if param_name in parameters_in: @@ -112,12 +119,7 @@ def _diff_parameters( @contextlib.contextmanager def expose_secrets(self): - """Context manager to expose secrets to the execution. - - Args: - map_variable (dict, optional): If the command is part of map node, the value of map. Defaults to None. - - """ + """Context manager to expose secrets to the execution.""" self.set_secrets_as_env_variables() try: yield @@ -126,9 +128,32 @@ def expose_secrets(self): finally: self.delete_secrets_from_env_variables() + def resolve_unreduced_parameters(self, map_variable: TypeMapVariable = None): + """Resolve the unreduced parameters.""" + params = self._context.run_log_store.get_parameters( + run_id=self._context.run_id + ).copy() + + for param_name, param in params.items(): + if param.reduced is False: + assert ( + map_variable is not None + ), "Parameters in non-map node should always be reduced" + + context_param = param_name + for _, v in map_variable.items(): + context_param = f"{v}_{context_param}" + + if context_param in params: # Is this if required? + params[param_name].value = params[context_param].value + + return params + @contextlib.contextmanager - def execution_context(self, map_variable: TypeMapVariable = None, allow_complex: bool = True): - params = self._context.run_log_store.get_parameters(run_id=self._context.run_id).copy() + def execution_context( + self, map_variable: TypeMapVariable = None, allow_complex: bool = True + ): + params = self.resolve_unreduced_parameters(map_variable=map_variable) logger.info(f"Parameters available for the execution: {params}") for param_name, param in params.items(): @@ -150,7 +175,11 @@ def execution_context(self, map_variable: TypeMapVariable = None, allow_complex: logger.debug(f"Resolved parameters: {params}") if not allow_complex: - params = {key: value for key, value in params.items() if isinstance(value, JsonParameter)} + params = { + key: value + for key, value in params.items() + if isinstance(value, JsonParameter) + } parameters_in = copy.deepcopy(params) try: @@ -161,8 +190,12 @@ def execution_context(self, map_variable: TypeMapVariable = None, allow_complex: finally: # Update parameters # This should only update the parameters that are changed at the root level. - diff_parameters = self._diff_parameters(parameters_in=parameters_in, context_params=params) - self._context.run_log_store.set_parameters(parameters=diff_parameters, run_id=self._context.run_id) + diff_parameters = self._diff_parameters( + parameters_in=parameters_in, context_params=params + ) + self._context.run_log_store.set_parameters( + parameters=diff_parameters, run_id=self._context.run_id + ) def task_return_to_parameter(task_return: TaskReturns, value: Any) -> Parameter: @@ -258,7 +291,10 @@ def execute_command( """Execute the notebook as defined by the command.""" attempt_log = StepAttempt(status=defaults.FAIL, start_time=str(datetime.now())) - with self.execution_context(map_variable=map_variable) as params, self.expose_secrets() as _: + with ( + self.execution_context(map_variable=map_variable) as params, + self.expose_secrets() as _, + ): module, func = utils.get_module_and_attr_names(self.command) sys.path.insert(0, os.getcwd()) # Need to add the current directory to path imported_module = importlib.import_module(module) @@ -266,21 +302,32 @@ def execute_command( try: try: - filtered_parameters = parameters.filter_arguments_for_func(f, params.copy(), map_variable) - logger.info(f"Calling {func} from {module} with {filtered_parameters}") + filtered_parameters = parameters.filter_arguments_for_func( + f, params.copy(), map_variable + ) + logger.info( + f"Calling {func} from {module} with {filtered_parameters}" + ) out_file = io.StringIO() with contextlib.redirect_stdout(out_file): - user_set_parameters = f(**filtered_parameters) # This is a tuple or single value + user_set_parameters = f( + **filtered_parameters + ) # This is a tuple or single value task_console.print(out_file.getvalue()) except Exception as e: - raise exceptions.CommandCallError(f"Function call: {self.command} did not succeed.\n") from e + raise exceptions.CommandCallError( + f"Function call: {self.command} did not succeed.\n" + ) from e attempt_log.input_parameters = params.copy() if map_variable: attempt_log.input_parameters.update( - {k: JsonParameter(value=v, kind="json") for k, v in map_variable.items()} + { + k: JsonParameter(value=v, kind="json") + for k, v in map_variable.items() + } ) if self.returns: @@ -288,7 +335,9 @@ def execute_command( user_set_parameters = (user_set_parameters,) if len(user_set_parameters) != len(self.returns): - raise ValueError("Returns task signature does not match the function returns") + raise ValueError( + "Returns task signature does not match the function returns" + ) output_parameters: Dict[str, Parameter] = {} metrics: Dict[str, Parameter] = {} @@ -400,7 +449,10 @@ def notebook_output_path(self) -> str: return str(file_name) def get_cli_options(self) -> Tuple[str, dict]: - return "notebook", {"command": self.command, "notebook-output-path": self.notebook_output_path} + return "notebook", { + "command": self.command, + "notebook-output-path": self.notebook_output_path, + } def execute_command( self, @@ -423,9 +475,12 @@ def execute_command( notebook_output_path = self.notebook_output_path - with self.execution_context( - map_variable=map_variable, allow_complex=False - ) as params, self.expose_secrets() as _: + with ( + self.execution_context( + map_variable=map_variable, allow_complex=False + ) as params, + self.expose_secrets() as _, + ): copy_params = copy.deepcopy(params) if map_variable: @@ -434,7 +489,9 @@ def execute_command( copy_params[key] = JsonParameter(kind="json", value=value) # Remove any {v}_unreduced parameters from the parameters - unprocessed_params = [k for k, v in copy_params.items() if not v.reduced] + unprocessed_params = [ + k for k, v in copy_params.items() if not v.reduced + ] for key in list(copy_params.keys()): if any(key.endswith(f"_{k}") for k in unprocessed_params): @@ -458,7 +515,9 @@ def execute_command( pm.execute_notebook(**kwds) task_console.print(out_file.getvalue()) - context.run_context.catalog_handler.put(name=notebook_output_path, run_id=context.run_context.run_id) + context.run_context.catalog_handler.put( + name=notebook_output_path, run_id=context.run_context.run_id + ) client = PloomberClient.from_path(path=notebook_output_path) namespace = client.get_namespace() @@ -466,7 +525,9 @@ def execute_command( output_parameters: Dict[str, Parameter] = {} try: for task_return in self.returns: - param_name = Template(task_return.name).safe_substitute(map_variable) # type: ignore + param_name = Template(task_return.name).safe_substitute( + map_variable # type: ignore + ) if map_variable: for _, v in map_variable.items(): @@ -566,7 +627,9 @@ class ShellTaskType(BaseTaskType): def returns_should_be_json(cls, returns: List[TaskReturns]): for task_return in returns: if task_return.kind == "object" or task_return.kind == "pydantic": - raise ValueError("Pydantic models or Objects are not allowed in returns") + raise ValueError( + "Pydantic models or Objects are not allowed in returns" + ) return returns @@ -601,7 +664,9 @@ def execute_command( subprocess_env[key] = secret_value try: - with self.execution_context(map_variable=map_variable, allow_complex=False) as params: + with self.execution_context( + map_variable=map_variable, allow_complex=False + ) as params: subprocess_env.update({k: v.get_value() for k, v in params.items()}) # Json dumps all runnable environment variables @@ -612,7 +677,9 @@ def execute_command( collect_delimiter = "=== COLLECT ===" - command = self.command.strip() + f" && echo '{collect_delimiter}' && env" + command = ( + self.command.strip() + f" && echo '{collect_delimiter}' && env" + ) logger.info(f"Executing shell command: {command}") capture = False diff --git a/runnable/utils.py b/runnable/utils.py index f097b7a9..81c275df 100644 --- a/runnable/utils.py +++ b/runnable/utils.py @@ -21,7 +21,7 @@ from runnable.defaults import TypeMapVariable if TYPE_CHECKING: # pragma: no cover - from runnable.extensions.nodes import TaskNode + from extensions.nodes.nodes import TaskNode from runnable.nodes import BaseNode @@ -86,7 +86,9 @@ def generate_run_id(run_id: str = "") -> str: return run_id -def apply_variables(apply_to: Dict[str, Any], variables: Dict[str, str]) -> Dict[str, Any]: +def apply_variables( + apply_to: Dict[str, Any], variables: Dict[str, str] +) -> Dict[str, Any]: """Safely applies the variables to a config. For example: For config: @@ -272,7 +274,9 @@ def get_local_docker_image_id(image_name: str) -> str: image = client.images.get(image_name) return image.attrs["Id"] except ImportError: # pragma: no cover - logger.warning("Did not find docker installed, some functionality might be affected") + logger.warning( + "Did not find docker installed, some functionality might be affected" + ) except BaseException: logger.exception(f"Could not find the image by name {image_name}") @@ -295,7 +299,9 @@ def get_git_code_identity(): code_identity.code_identifier_dependable, changed = is_git_clean() code_identity.code_identifier_url = get_git_remote() if changed: - code_identity.code_identifier_message = "changes found in " + ", ".join(changed.split("\n")) + code_identity.code_identifier_message = "changes found in " + ", ".join( + changed.split("\n") + ) except BaseException: logger.exception("Git code versioning problems") @@ -331,7 +337,9 @@ def get_tracked_data() -> Dict[str, str]: try: tracked_data[key.lower()] = json.loads(value) except json.decoder.JSONDecodeError: - logger.warning(f"Tracker {key} could not be JSON decoded, adding the literal value") + logger.warning( + f"Tracker {key} could not be JSON decoded, adding the literal value" + ) tracked_data[key.lower()] = value del os.environ[env_var] @@ -389,9 +397,13 @@ def get_data_hash(file_name: str): str: The SHA ID of the file contents """ # https://stackoverflow.com/questions/3431825/generating-an-md5-checksum-of-a-file - return hash_bytestr_iter(file_as_blockiter(open(file_name, "rb")), hashlib.sha256()) # pragma: no cover + # TODO: For a big file, we should only hash the first few bytes + return hash_bytestr_iter( + file_as_blockiter(open(file_name, "rb")), hashlib.sha256() + ) # pragma: no cover +# TODO: This is not the right place for this. def get_node_execution_command( node: BaseNode, map_variable: TypeMapVariable = None, @@ -415,7 +427,11 @@ def get_node_execution_command( log_level = log_level or logging.getLevelName(logger.getEffectiveLevel()) - action = f"runnable execute_single_node {run_id} " f"{node._command_friendly_name()}" f" --log-level {log_level}" + action = ( + f"runnable execute_single_node {run_id} " + f"{node._command_friendly_name()}" + f" --log-level {log_level}" + ) if context.run_context.pipeline_file: action = action + f" --file {context.run_context.pipeline_file}" @@ -435,6 +451,7 @@ def get_node_execution_command( return action +# TODO: This is not the right place for this. def get_fan_command( mode: str, node: BaseNode, @@ -478,6 +495,7 @@ def get_fan_command( return action +# TODO: This is not the right place for this. def get_job_execution_command(node: TaskNode, over_write_run_id: str = "") -> str: """Get the execution command to run a job via command line. @@ -520,7 +538,9 @@ def get_job_execution_command(node: TaskNode, over_write_run_id: str = "") -> st return action -def get_provider_by_name_and_type(service_type: str, service_details: defaults.ServiceConfig): +def get_provider_by_name_and_type( + service_type: str, service_details: defaults.ServiceConfig +): """Given a service type, one of executor, run_log_store, catalog, secrets and the config return the exact child class implementing the service. We use stevedore to do the work for us. @@ -542,7 +562,9 @@ def get_provider_by_name_and_type(service_type: str, service_details: defaults.S if "config" in service_details: service_config = service_details.get("config", {}) - logger.debug(f"Trying to get a service of {service_type} of the name {service_name} with config: {service_config}") + logger.debug( + f"Trying to get a service of {service_type} of the name {service_name} with config: {service_config}" + ) try: mgr = driver.DriverManager( namespace=namespace, @@ -552,8 +574,12 @@ def get_provider_by_name_and_type(service_type: str, service_details: defaults.S ) return mgr.driver except Exception as _e: - logger.exception(f"Could not find the service of type: {service_type} with config: {service_details}") - raise Exception(f"Could not find the service of type: {service_type} with config: {service_details}") from _e + logger.exception( + f"Could not find the service of type: {service_type} with config: {service_details}" + ) + raise Exception( + f"Could not find the service of type: {service_type} with config: {service_details}" + ) from _e def get_run_config() -> dict: @@ -585,7 +611,9 @@ def json_to_ordered_dict(json_str: str) -> TypeMapVariable: return OrderedDict() -def set_runnable_environment_variables(run_id: str = "", configuration_file: str = "", tag: str = "") -> None: +def set_runnable_environment_variables( + run_id: str = "", configuration_file: str = "", tag: str = "" +) -> None: """Set the environment variables used by runnable. This function should be called during the prepare configurations by all executors. @@ -604,7 +632,7 @@ def set_runnable_environment_variables(run_id: str = "", configuration_file: str os.environ[defaults.RUNNABLE_RUN_TAG] = tag -def gather_variables() -> dict: +def gather_variables() -> Dict[str, str]: """Gather all the environment variables used by runnable. All the variables start with runnable_VAR_. Returns: diff --git a/scripts/update_version.py b/scripts/update_version.py deleted file mode 100644 index 10a1b3d8..00000000 --- a/scripts/update_version.py +++ /dev/null @@ -1,16 +0,0 @@ -import sys - -from tomlkit import dump, load - -if len(sys.argv) < 2: - msg = "Usage: python upload_version " - -new_version = sys.argv[1] -output_file = "pyproject.toml" -if len(sys.argv) > 2: - output_file = sys.argv[2] - -toml_file = "pyproject.toml" -contents = load(open(toml_file, "rb")) -contents["tool"]["poetry"]["version"] = str(new_version) -dump(contents, open(output_file, "w")) diff --git a/runnable/extensions/executor/local_container/__init__.py b/tests/__init__.py similarity index 100% rename from runnable/extensions/executor/local_container/__init__.py rename to tests/__init__.py diff --git a/runnable/extensions/executor/mocked/__init__.py b/tests/extensions/__init__.py similarity index 100% rename from runnable/extensions/executor/mocked/__init__.py rename to tests/extensions/__init__.py diff --git a/tests/runnable/extensions/catalog/test_catalog_extension.py b/tests/extensions/catalog/test_catalog_extension.py similarity index 96% rename from tests/runnable/extensions/catalog/test_catalog_extension.py rename to tests/extensions/catalog/test_catalog_extension.py index b9204269..685b6dba 100644 --- a/tests/runnable/extensions/catalog/test_catalog_extension.py +++ b/tests/extensions/catalog/test_catalog_extension.py @@ -1,4 +1,4 @@ -from runnable.extensions.catalog import is_catalog_out_of_sync +from runnable.catalog import is_catalog_out_of_sync def test_is_catalog_out_of_sync_returns_true_for_empty_synced_catalogs(): diff --git a/tests/runnable/extensions/catalog/test_file_system.py b/tests/extensions/catalog/test_file_system.py similarity index 62% rename from tests/runnable/extensions/catalog/test_file_system.py rename to tests/extensions/catalog/test_file_system.py index 40c03c90..f6b8036a 100644 --- a/tests/runnable/extensions/catalog/test_file_system.py +++ b/tests/extensions/catalog/test_file_system.py @@ -1,10 +1,11 @@ -import pytest -import tempfile import os +import tempfile +import pytest + +from extensions.catalog import file_system as module +from extensions.catalog.file_system import FileSystemCatalog from runnable import defaults -from runnable.extensions.catalog.file_system.implementation import FileSystemCatalog -import runnable.extensions.catalog.file_system.implementation as implementation def test_file_system_catalog_inits_default_values_if_none_config(): @@ -13,32 +14,42 @@ def test_file_system_catalog_inits_default_values_if_none_config(): assert catalog_handler.catalog_location == defaults.CATALOG_LOCATION_FOLDER -def test_file_system_catalog_get_catalog_location_defaults_if_location_not_provided(monkeypatch, mocker): +def test_file_system_catalog_get_catalog_location_defaults_if_location_not_provided( + monkeypatch, mocker +): catalog_handler = FileSystemCatalog() assert catalog_handler.catalog_location == defaults.CATALOG_LOCATION_FOLDER -def test_file_system_catalog_catalog_location_returns_config_catalog_location_if_provided(monkeypatch, mocker): +def test_file_system_catalog_catalog_location_returns_config_catalog_location_if_provided( + monkeypatch, mocker +): catalog_handler = FileSystemCatalog(catalog_location="this") assert catalog_handler.catalog_location == "this" -def test_file_system_catalog_get_raises_exception_if_catalog_does_not_exist(monkeypatch, mocker): +def test_file_system_catalog_get_raises_exception_if_catalog_does_not_exist( + monkeypatch, mocker +): def mock_does_dir_exist(dir_name): if dir_name == "this_compute_folder": return True return False - monkeypatch.setattr(implementation.utils, "does_dir_exist", mock_does_dir_exist) + monkeypatch.setattr(module.utils, "does_dir_exist", mock_does_dir_exist) catalog_handler = FileSystemCatalog(catalog_location="this_location") with pytest.raises(Exception, match="Expected Catalog to be present at"): - catalog_handler.get("testing", run_id="dummy_run_id", compute_data_folder="this_compute_folder") + catalog_handler.get( + "testing", run_id="dummy_run_id", compute_data_folder="this_compute_folder" + ) -def test_file_system_catalog_get_copies_files_from_catalog_to_compute_folder_with_all(mocker, monkeypatch): +def test_file_system_catalog_get_copies_files_from_catalog_to_compute_folder_with_all( + mocker, monkeypatch +): mock_run_store = mocker.MagicMock() mock_context = mocker.MagicMock() mock_context.run_log_store = mock_run_store @@ -51,10 +62,18 @@ def test_file_system_catalog_get_copies_files_from_catalog_to_compute_folder_wit with tempfile.TemporaryDirectory() as catalog_location: with tempfile.TemporaryDirectory(dir=".") as compute_folder: - catalog_location_path = implementation.Path(catalog_location) + catalog_location_path = module.Path(catalog_location) run_id = "testing" - implementation.Path(catalog_location_path / run_id / compute_folder).mkdir(parents=True) - with open(implementation.Path(catalog_location) / run_id / compute_folder / "catalog_file", "w") as fw: + module.Path(catalog_location_path / run_id / compute_folder).mkdir( + parents=True + ) + with open( + module.Path(catalog_location) + / run_id + / compute_folder + / "catalog_file", + "w", + ) as fw: fw.write("hello") catalog_handler = FileSystemCatalog() @@ -67,7 +86,9 @@ def test_file_system_catalog_get_copies_files_from_catalog_to_compute_folder_wit assert len(list(files)) == 1 -def test_file_system_catalog_get_copies_files_from_catalog_to_compute_folder_with_pattern(mocker, monkeypatch): +def test_file_system_catalog_get_copies_files_from_catalog_to_compute_folder_with_pattern( + mocker, monkeypatch +): mock_run_store = mocker.MagicMock() mock_context = mocker.MagicMock() mock_context.run_log_store = mock_run_store @@ -80,13 +101,24 @@ def test_file_system_catalog_get_copies_files_from_catalog_to_compute_folder_wit with tempfile.TemporaryDirectory() as catalog_location: with tempfile.TemporaryDirectory(dir=".") as compute_folder: - catalog_location_path = implementation.Path(catalog_location) + catalog_location_path = module.Path(catalog_location) run_id = "testing" - implementation.Path(catalog_location_path / run_id / compute_folder).mkdir(parents=True) - with open(implementation.Path(catalog_location) / run_id / compute_folder / "catalog_file", "w") as fw: + module.Path(catalog_location_path / run_id / compute_folder).mkdir( + parents=True + ) + with open( + module.Path(catalog_location) + / run_id + / compute_folder + / "catalog_file", + "w", + ) as fw: fw.write("hello") - with open(implementation.Path(catalog_location) / run_id / compute_folder / "not_catalog", "w") as fw: + with open( + module.Path(catalog_location) / run_id / compute_folder / "not_catalog", + "w", + ) as fw: fw.write("hello") catalog_handler = FileSystemCatalog(catalog_location=catalog_location) @@ -97,8 +129,12 @@ def test_file_system_catalog_get_copies_files_from_catalog_to_compute_folder_wit assert len(list(files)) == 1 -def test_file_system_catalog_put_copies_files_from_compute_folder_to_catalog_if_synced_changed_all(mocker, monkeypatch): - monkeypatch.setattr(implementation, "is_catalog_out_of_sync", mocker.MagicMock(return_value=True)) +def test_file_system_catalog_put_copies_files_from_compute_folder_to_catalog_if_synced_changed_all( + mocker, monkeypatch +): + monkeypatch.setattr( + module, "is_catalog_out_of_sync", mocker.MagicMock(return_value=True) + ) mock_run_store = mocker.MagicMock() mock_context = mocker.MagicMock() mock_context.run_log_store = mock_run_store @@ -111,11 +147,11 @@ def test_file_system_catalog_put_copies_files_from_compute_folder_to_catalog_if_ with tempfile.TemporaryDirectory() as catalog_location: with tempfile.TemporaryDirectory(dir=".") as compute_folder: - catalog_location_path = implementation.Path(catalog_location) + catalog_location_path = module.Path(catalog_location) run_id = "testing" - implementation.Path(catalog_location_path / run_id).mkdir(parents=True) + module.Path(catalog_location_path / run_id).mkdir(parents=True) - with open(implementation.Path(compute_folder) / "catalog_file", "w") as fw: + with open(module.Path(compute_folder) / "catalog_file", "w") as fw: fw.write("hello") catalog_handler = FileSystemCatalog(catalog_location=catalog_location) @@ -129,7 +165,9 @@ def test_file_system_catalog_put_copies_files_from_compute_folder_to_catalog_if_ def test_file_system_catalog_put_copies_files_from_compute_folder_to_catalog_if_synced_changed_pattern( mocker, monkeypatch ): - monkeypatch.setattr(implementation, "is_catalog_out_of_sync", mocker.MagicMock(return_value=True)) + monkeypatch.setattr( + module, "is_catalog_out_of_sync", mocker.MagicMock(return_value=True) + ) mock_run_store = mocker.MagicMock() mock_context = mocker.MagicMock() mock_context.run_log_store = mock_run_store @@ -141,13 +179,13 @@ def test_file_system_catalog_put_copies_files_from_compute_folder_to_catalog_if_ ) with tempfile.TemporaryDirectory() as catalog_location: with tempfile.TemporaryDirectory(dir=".") as compute_folder: - catalog_location_path = implementation.Path(catalog_location) + catalog_location_path = module.Path(catalog_location) run_id = "testing" - implementation.Path(catalog_location_path / run_id).mkdir(parents=True) - with open(implementation.Path(compute_folder) / "catalog_file", "w") as fw: + module.Path(catalog_location_path / run_id).mkdir(parents=True) + with open(module.Path(compute_folder) / "catalog_file", "w") as fw: fw.write("hello") - with open(implementation.Path(compute_folder) / "not_catalog_file", "w") as fw: + with open(module.Path(compute_folder) / "not_catalog_file", "w") as fw: fw.write("hello") catalog_handler = FileSystemCatalog(catalog_location=catalog_location) @@ -159,8 +197,12 @@ def test_file_system_catalog_put_copies_files_from_compute_folder_to_catalog_if_ assert len(list(files)) == 1 -def test_file_system_catalog_put_copies_files_from_compute_folder_to_catalog_if_synced_true(mocker, monkeypatch): - monkeypatch.setattr(implementation, "is_catalog_out_of_sync", mocker.MagicMock(return_value=False)) +def test_file_system_catalog_put_copies_files_from_compute_folder_to_catalog_if_synced_true( + mocker, monkeypatch +): + monkeypatch.setattr( + module, "is_catalog_out_of_sync", mocker.MagicMock(return_value=False) + ) mock_run_store = mocker.MagicMock() mock_context = mocker.MagicMock() mock_context.run_log_store = mock_run_store @@ -173,13 +215,13 @@ def test_file_system_catalog_put_copies_files_from_compute_folder_to_catalog_if_ with tempfile.TemporaryDirectory() as catalog_location: with tempfile.TemporaryDirectory(dir=".") as compute_folder: - catalog_location_path = implementation.Path(catalog_location) + catalog_location_path = module.Path(catalog_location) run_id = "testing" - implementation.Path(catalog_location_path / run_id).mkdir(parents=True) - with open(implementation.Path(compute_folder) / "catalog_file", "w") as fw: + module.Path(catalog_location_path / run_id).mkdir(parents=True) + with open(module.Path(compute_folder) / "catalog_file", "w") as fw: fw.write("hello") - with open(implementation.Path(compute_folder) / "not_catalog_file", "w") as fw: + with open(module.Path(compute_folder) / "not_catalog_file", "w") as fw: fw.write("hello") catalog_handler = FileSystemCatalog(catalog_location=catalog_location) @@ -193,65 +235,77 @@ def test_file_system_catalog_put_copies_files_from_compute_folder_to_catalog_if_ def test_file_system_catalog_put_uses_compute_folder_by_default(monkeypatch, mocker): mock_safe_make_dir = mocker.MagicMock() - monkeypatch.setattr(implementation.utils, "safe_make_dir", mock_safe_make_dir) + monkeypatch.setattr(module.utils, "safe_make_dir", mock_safe_make_dir) mock_does_dir_exist = mocker.MagicMock(side_effect=Exception()) - monkeypatch.setattr(implementation.utils, "does_dir_exist", mock_does_dir_exist) + monkeypatch.setattr(module.utils, "does_dir_exist", mock_does_dir_exist) catalog_handler = FileSystemCatalog(catalog_location="this_location") with pytest.raises(Exception): catalog_handler.put("testing", run_id="dummy_run_id") - mock_does_dir_exist.assert_called_once_with(implementation.Path(".")) + mock_does_dir_exist.assert_called_once_with(module.Path(".")) def test_file_system_catalog_put_uses_compute_folder_provided(monkeypatch, mocker): mock_safe_make_dir = mocker.MagicMock() - monkeypatch.setattr(implementation.utils, "safe_make_dir", mock_safe_make_dir) + monkeypatch.setattr(module.utils, "safe_make_dir", mock_safe_make_dir) mock_does_dir_exist = mocker.MagicMock(side_effect=Exception()) - monkeypatch.setattr(implementation.utils, "does_dir_exist", mock_does_dir_exist) + monkeypatch.setattr(module.utils, "does_dir_exist", mock_does_dir_exist) catalog_handler = FileSystemCatalog(catalog_location="this_location") with pytest.raises(Exception): - catalog_handler.put("testing", run_id="dummy_run_id", compute_data_folder="not_data") + catalog_handler.put( + "testing", run_id="dummy_run_id", compute_data_folder="not_data" + ) - mock_does_dir_exist.assert_called_once_with(implementation.Path("not_data")) + mock_does_dir_exist.assert_called_once_with(module.Path("not_data")) -def test_file_system_catalog_put_raises_exception_if_compute_data_folder_does_not_exist(monkeypatch, mocker): +def test_file_system_catalog_put_raises_exception_if_compute_data_folder_does_not_exist( + monkeypatch, mocker +): mock_safe_make_dir = mocker.MagicMock() - monkeypatch.setattr(implementation.utils, "safe_make_dir", mock_safe_make_dir) + monkeypatch.setattr(module.utils, "safe_make_dir", mock_safe_make_dir) mock_does_dir_exist = mocker.MagicMock(return_value=False) - monkeypatch.setattr(implementation.utils, "does_dir_exist", mock_does_dir_exist) + monkeypatch.setattr(module.utils, "does_dir_exist", mock_does_dir_exist) catalog_handler = FileSystemCatalog(catalog_location="this_location") with pytest.raises(Exception): - catalog_handler.put("testing", run_id="dummy_run_id", compute_data_folder="this_compute_folder") + catalog_handler.put( + "testing", run_id="dummy_run_id", compute_data_folder="this_compute_folder" + ) -def test_file_system_catalog_put_creates_catalog_location_using_run_id(monkeypatch, mocker): +def test_file_system_catalog_put_creates_catalog_location_using_run_id( + monkeypatch, mocker +): mock_safe_make_dir = mocker.MagicMock() - monkeypatch.setattr(implementation.utils, "safe_make_dir", mock_safe_make_dir) + monkeypatch.setattr(module.utils, "safe_make_dir", mock_safe_make_dir) mock_does_dir_exist = mocker.MagicMock(side_effect=Exception()) - monkeypatch.setattr(implementation.utils, "does_dir_exist", mock_does_dir_exist) + monkeypatch.setattr(module.utils, "does_dir_exist", mock_does_dir_exist) catalog_handler = FileSystemCatalog(catalog_location="this_location") with pytest.raises(Exception): catalog_handler.put("testing", run_id="dummy_run_id") - mock_safe_make_dir.assert_called_once_with(implementation.Path("this_location") / "dummy_run_id") + mock_safe_make_dir.assert_called_once_with( + module.Path("this_location") / "dummy_run_id" + ) -def test_file_system_sync_between_runs_raises_exception_if_previous_catalog_does_not_exist(monkeypatch, mocker): +def test_file_system_sync_between_runs_raises_exception_if_previous_catalog_does_not_exist( + monkeypatch, mocker +): mock_safe_make_dir = mocker.MagicMock() - monkeypatch.setattr(implementation.utils, "safe_make_dir", mock_safe_make_dir) + monkeypatch.setattr(module.utils, "safe_make_dir", mock_safe_make_dir) mock_does_dir_exist = mocker.MagicMock(return_value=False) - monkeypatch.setattr(implementation.utils, "does_dir_exist", mock_does_dir_exist) + monkeypatch.setattr(module.utils, "does_dir_exist", mock_does_dir_exist) catalog_handler = FileSystemCatalog(catalog_location="this_location") with pytest.raises(Exception): diff --git a/tests/runnable/extensions/executor/test_argo_executor.py b/tests/extensions/executor/test_argo_executor.py similarity index 58% rename from tests/runnable/extensions/executor/test_argo_executor.py rename to tests/extensions/executor/test_argo_executor.py index 4f6e831d..b86103fc 100644 --- a/tests/runnable/extensions/executor/test_argo_executor.py +++ b/tests/extensions/executor/test_argo_executor.py @@ -1,20 +1,26 @@ import pytest -from runnable.extensions.executor.argo import implementation +from extensions.executor import argo as implementation def test_secret_env_var_has_value_from_field(): secret_env = implementation.SecretEnvVar( - environment_variable="test_env", secret_name="secret_name", secret_key="secret_key" + environment_variable="test_env", + secret_name="secret_name", + secret_key="secret_key", ) assert secret_env.environment_variable == "test_env" - assert secret_env.valueFrom == {"secretKeyRef": {"name": "secret_name", "key": "secret_key"}} + assert secret_env.valueFrom == { + "secretKeyRef": {"name": "secret_name", "key": "secret_key"} + } def test_secret_env_renders_properly(): secret_env = implementation.SecretEnvVar( - environment_variable="test_env", secret_name="secret_name", secret_key="secret_key" + environment_variable="test_env", + secret_name="secret_name", + secret_key="secret_key", ) assert secret_env.model_dump(by_alias=True) == { "name": "test_env", @@ -32,7 +38,10 @@ def test_limit_renders_gpu_when_available(): request = implementation.Request() - assert limit.model_dump(by_alias=True, exclude_none=True) == {**request.model_dump(), "nvidia.com/gpu": "1"} + assert limit.model_dump(by_alias=True, exclude_none=True) == { + **request.model_dump(), + "nvidia.com/gpu": "1", + } def test_limit_ignores_gpu_when_none(): @@ -40,11 +49,15 @@ def test_limit_ignores_gpu_when_none(): request = implementation.Request() - assert limit.model_dump(by_alias=True, exclude_none=True) == {**request.model_dump()} + assert limit.model_dump(by_alias=True, exclude_none=True) == { + **request.model_dump() + } def test_out_put_parameter_renders_properly(): - output_parameter = implementation.OutputParameter(name="test_name", value="test_value") + output_parameter = implementation.OutputParameter( + name="test_name", value="test_value" + ) assert output_parameter.model_dump(by_alias=True) == { "name": "test_name", @@ -54,7 +67,9 @@ def test_out_put_parameter_renders_properly(): def test_volume_renders_properly(): - volume = implementation.Volume(name="test_name", claim="test_claim", mount_path="mount here") + volume = implementation.Volume( + name="test_name", claim="test_claim", mount_path="mount here" + ) assert volume.model_dump(by_alias=True, exclude_none=True) == { "name": "test_name", @@ -66,18 +81,29 @@ def test_spec_reshapes_arguments(): test_env1 = implementation.EnvVar(name="test_env1", value="test_value1") test_env2 = implementation.EnvVar(name="test_env2", value="test_value2") - spec = implementation.Spec(arguments=[test_env1, test_env2], active_deadline_seconds=10) + spec = implementation.Spec( + arguments=[test_env1, test_env2], active_deadline_seconds=10 + ) assert spec.model_dump(by_alias=True, exclude_none=True)["arguments"] == { - "parameters": [{"name": "test_env1", "value": "test_value1"}, {"name": "test_env2", "value": "test_value2"}] + "parameters": [ + {"name": "test_env1", "value": "test_value1"}, + {"name": "test_env2", "value": "test_value2"}, + ] } def test_spec_populates_container_volumes_and_persistent_volumes(): - volume1 = implementation.UserVolumeMounts(name="test_name1", mount_path="test_mount_path1") - volume2 = implementation.UserVolumeMounts(name="test_name2", mount_path="test_mount_path2") + volume1 = implementation.UserVolumeMounts( + name="test_name1", mount_path="test_mount_path1" + ) + volume2 = implementation.UserVolumeMounts( + name="test_name2", mount_path="test_mount_path2" + ) - spec = implementation.Spec(persistent_volumes=[volume1, volume2], active_deadline_seconds=10) + spec = implementation.Spec( + persistent_volumes=[volume1, volume2], active_deadline_seconds=10 + ) model_dump = spec.model_dump(by_alias=True, exclude_none=True) @@ -88,7 +114,9 @@ def test_spec_populates_container_volumes_and_persistent_volumes(): def test_output_parameter_valuefrom_includes_path(): - test_out_put_parameter = implementation.OutputParameter(name="test_name", path="test_path") + test_out_put_parameter = implementation.OutputParameter( + name="test_name", path="test_path" + ) assert test_out_put_parameter.model_dump(by_alias=True, exclude_none=True) == { "name": "test_name", @@ -97,9 +125,13 @@ def test_output_parameter_valuefrom_includes_path(): def test_container_command_gets_split(): - test_container = implementation.Container(image="test_image", command="am I splitting?") + test_container = implementation.Container( + image="test_image", command="am I splitting?" + ) - assert test_container.model_dump(by_alias=True, exclude_none=True, exclude_unset=True)["command"] == [ + assert test_container.model_dump( + by_alias=True, exclude_none=True, exclude_unset=True + )["command"] == [ "am", "I", "splitting?", diff --git a/tests/runnable/extensions/executor/test_generic_executor.py b/tests/extensions/executor/test_generic_executor.py similarity index 62% rename from tests/runnable/extensions/executor/test_generic_executor.py rename to tests/extensions/executor/test_generic_executor.py index db57fbda..0286a000 100644 --- a/tests/runnable/extensions/executor/test_generic_executor.py +++ b/tests/extensions/executor/test_generic_executor.py @@ -1,30 +1,43 @@ -import logging - import pytest -import runnable.extensions.executor as executor from runnable import defaults, exceptions -from runnable.extensions import executor -from runnable.extensions.executor import GenericExecutor @pytest.fixture(autouse=True) -def instantiable_base_class(monkeypatch, mocker): +def instantiable_base_class(monkeypatch): monkeypatch.setattr(GenericExecutor, "__abstractmethods__", set()) yield +@pytest.fixture +def mock_base_node(monkeypatch, mocker): + from runnable.nodes import BaseNode + + monkeypatch.setattr(BaseNode, "__abstractmethods__", set()) + + class MockNode(BaseNode): + node_type: str = "test" + name: str = "name" + internal_name: str = "internal_name" + + yield MockNode + + @pytest.fixture def mock_run_context(mocker, monkeypatch): mock_run_context = mocker.Mock() - monkeypatch.setattr(executor.context, "run_context", mock_run_context) + monkeypatch.setattr(module.context, "run_context", mock_run_context) return mock_run_context -def test_get_parameters_gets_parameters_from_user_parameters(mocker, monkeypatch, mock_run_context): +def test_get_parameters_gets_parameters_from_user_parameters( + mocker, monkeypatch, mock_run_context +): mock_run_context.parameters_file = "" monkeypatch.setattr( - executor.parameters, "get_user_set_parameters", mocker.MagicMock(return_value={"executor": "test"}) + module.parameters, + "get_user_set_parameters", + mocker.MagicMock(return_value={"executor": "test"}), ) test_executor = GenericExecutor() @@ -37,25 +50,33 @@ def test_get_parameters_user_parameters_overwrites_parameters_from_parameters_fi mock_run_context.parameters_file = "parameters_file" mock_load_yaml = mocker.MagicMock(return_value={"executor": "this"}) - monkeypatch.setattr(executor.utils, "load_yaml", mock_load_yaml) + monkeypatch.setattr(module.utils, "load_yaml", mock_load_yaml) monkeypatch.setattr( - executor.parameters, "get_user_set_parameters", mocker.MagicMock(return_value={"executor": "that"}) + module.parameters, + "get_user_set_parameters", + mocker.MagicMock(return_value={"executor": "that"}), ) test_executor = GenericExecutor() assert test_executor._get_parameters() == {"executor": "that"} -def test_set_up_run_log_throws_exception_if_run_log_already_exists(mocker, monkeypatch, mock_run_context): +def test_set_up_run_log_throws_exception_if_run_log_already_exists( + mocker, monkeypatch, mock_run_context +): mock_run_log_store = mocker.MagicMock() - mock_run_log_store.get_run_log_by_id = mocker.MagicMock(side_effect=exceptions.RunLogExistsError) + mock_run_log_store.get_run_log_by_id = mocker.MagicMock( + side_effect=exceptions.RunLogExistsError + ) with pytest.raises(exceptions.RunLogExistsError): GenericExecutor()._set_up_run_log() -def test_set_up_run_log_exists_ok_returns_without_exception(mocker, monkeypatch, mock_run_context): +def test_set_up_run_log_exists_ok_returns_without_exception( + mocker, monkeypatch, mock_run_context +): GenericExecutor()._set_up_run_log(exists_ok=True) @@ -98,7 +119,9 @@ def test_set_up_run_log_calls_create_run_log(mocker, monkeypatch, mock_run_conte ) -def test_set_up_run_log_store_calls_set_parameters(mocker, monkeypatch, mock_run_context): +def test_set_up_run_log_store_calls_set_parameters( + mocker, monkeypatch, mock_run_context +): mock_get_parameters = mocker.MagicMock() monkeypatch.setattr(GenericExecutor, "_get_parameters", mock_get_parameters) @@ -115,7 +138,9 @@ def test_set_up_run_log_store_calls_set_parameters(mocker, monkeypatch, mock_run assert mock_set_parameters.call_count == 1 -def test_set_up_run_log_store_calls_set_run_config(mocker, monkeypatch, mock_run_context): +def test_set_up_run_log_store_calls_set_run_config( + mocker, monkeypatch, mock_run_context +): mock_get_parameters = mocker.MagicMock() monkeypatch.setattr(GenericExecutor, "_get_parameters", mock_get_parameters) @@ -132,7 +157,9 @@ def test_set_up_run_log_store_calls_set_run_config(mocker, monkeypatch, mock_run assert mock_set_run_config.call_count == 1 -def test_base_executor_prepare_for_graph_execution_calls(mocker, monkeypatch, mock_run_context): +def test_base_executor_prepare_for_graph_execution_calls( + mocker, monkeypatch, mock_run_context +): mock_integration = mocker.MagicMock() mock_validate = mocker.MagicMock() mock_configure_for_traversal = mocker.MagicMock() @@ -143,8 +170,8 @@ def test_base_executor_prepare_for_graph_execution_calls(mocker, monkeypatch, mo mock_set_up_run_log = mocker.MagicMock() monkeypatch.setattr(GenericExecutor, "_set_up_run_log", mock_set_up_run_log) - monkeypatch.setattr(executor, "integration", mock_integration) - monkeypatch.setattr(executor.BaseExecutor, "_set_up_run_log", mocker.MagicMock()) + monkeypatch.setattr(module, "integration", mock_integration) + monkeypatch.setattr(module.BaseExecutor, "_set_up_run_log", mocker.MagicMock()) base_executor = GenericExecutor() @@ -165,7 +192,7 @@ def test_base_execution_prepare_for_node_calls(mocker, monkeypatch, mock_run_con mock_set_up_run_log = mocker.MagicMock() monkeypatch.setattr(GenericExecutor, "_set_up_run_log", mock_set_up_run_log) - monkeypatch.setattr(executor, "integration", mock_integration) + monkeypatch.setattr(module, "integration", mock_integration) base_executor = GenericExecutor() @@ -175,15 +202,21 @@ def test_base_execution_prepare_for_node_calls(mocker, monkeypatch, mock_run_con assert mock_validate.call_count == 3 -def test_base_executor__sync_catalog_raises_exception_if_stage_not_in_get_or_put(mocker, monkeypatch): +def test_base_executor__sync_catalog_raises_exception_if_stage_not_in_get_or_put( + mocker, monkeypatch +): test_executor = GenericExecutor() with pytest.raises(Exception): test_executor._sync_catalog(step_log="test", stage="puts") -def test_sync_catalog_does_nothing_for_terminal_node(mocker, monkeypatch, mock_run_context): - mock_node = mocker.MagicMock() - mock_node._get_catalog_settings = mocker.MagicMock(side_effect=exceptions.TerminalNodeError) +def test_sync_catalog_does_nothing_for_terminal_node( + mocker, monkeypatch, mock_run_context, mock_base_node +): + mock_node = mock_base_node() + mock_node._get_catalog_settings = mocker.MagicMock( + side_effect=exceptions.TerminalNodeError + ) test_executor = GenericExecutor() test_executor._context_node = mock_node @@ -191,8 +224,10 @@ def test_sync_catalog_does_nothing_for_terminal_node(mocker, monkeypatch, mock_r test_executor._sync_catalog(stage="get") -def test_sync_catalog_does_nothing_for_no_catalog_settings(mocker, monkeypatch, mock_run_context): - mock_node = mocker.MagicMock() +def test_sync_catalog_does_nothing_for_no_catalog_settings( + mocker, monkeypatch, mock_run_context, mock_base_node +): + mock_node = mock_base_node() mock_node._get_catalog_settings = mocker.MagicMock(return_value={}) test_executor = GenericExecutor() @@ -201,9 +236,13 @@ def test_sync_catalog_does_nothing_for_no_catalog_settings(mocker, monkeypatch, test_executor._sync_catalog(stage="get") -def test_sync_catalog_does_nothing_for_catalog_settings_stage_not_in(mocker, monkeypatch, mock_run_context): - mock_node = mocker.MagicMock() - mock_node._get_catalog_settings = mocker.MagicMock(return_value={"get": "something"}) +def test_sync_catalog_does_nothing_for_catalog_settings_stage_not_in( + mocker, monkeypatch, mock_run_context, mock_base_node +): + mock_node = mock_base_node() + mock_node._get_catalog_settings = mocker.MagicMock( + return_value={"get": "something"} + ) test_executor = GenericExecutor() test_executor._context_node = mock_node @@ -211,10 +250,11 @@ def test_sync_catalog_does_nothing_for_catalog_settings_stage_not_in(mocker, mon test_executor._sync_catalog(stage="put") -def test_sync_catalog_returns_nothing_if_no_syncing_for_node(mocker, monkeypatch, mock_run_context): - mock_node = mocker.MagicMock() - - mock_node._get_catalog_settings.return_value = None +def test_sync_catalog_returns_nothing_if_no_syncing_for_node( + mocker, monkeypatch, mock_run_context, mock_base_node +): + mock_node = mock_base_node() + setattr(mock_node, "_get_catalog_settings", lambda: None) test_executor = GenericExecutor() test_executor._context_node = mock_node @@ -222,12 +262,18 @@ def test_sync_catalog_returns_nothing_if_no_syncing_for_node(mocker, monkeypatch assert test_executor._sync_catalog(stage="get") is None -def test_sync_catalog_returns_empty_list_if_asked_nothing_in_stage(mocker, monkeypatch, mock_run_context): - mock_node = mocker.MagicMock() - mock_node._get_catalog_settings.return_value = {"get": [], "put": []} +def test_sync_catalog_returns_empty_list_if_asked_nothing_in_stage( + mocker, monkeypatch, mock_run_context, mock_base_node +): + mock_node = mock_base_node() + setattr(mock_node, "_get_catalog_settings", lambda: {"get": [], "put": []}) mock_get_effective_compute_folder = mocker.MagicMock(return_value="compute_folder") - monkeypatch.setattr(GenericExecutor, "get_effective_compute_data_folder", mock_get_effective_compute_folder) + monkeypatch.setattr( + GenericExecutor, + "get_effective_compute_data_folder", + mock_get_effective_compute_folder, + ) test_executor = GenericExecutor() test_executor._context_node = mock_node @@ -236,13 +282,18 @@ def test_sync_catalog_returns_empty_list_if_asked_nothing_in_stage(mocker, monke assert test_executor._sync_catalog(stage="put") == [] -def test_sync_catalog_calls_get_from_catalog_handler(mocker, monkeypatch, mock_run_context): - mock_node = mocker.MagicMock() - mock_node._get_catalog_settings.return_value = {"get": ["me"], "put": []} - mock_step_log = mocker.MagicMock() +def test_sync_catalog_calls_get_from_catalog_handler( + mocker, monkeypatch, mock_run_context, mock_base_node +): + mock_node = mock_base_node() + setattr(mock_node, "_get_catalog_settings", lambda: {"get": ["me"], "put": []}) mock_get_effective_compute_folder = mocker.MagicMock(return_value="compute_folder") - monkeypatch.setattr(GenericExecutor, "get_effective_compute_data_folder", mock_get_effective_compute_folder) + monkeypatch.setattr( + GenericExecutor, + "get_effective_compute_data_folder", + mock_get_effective_compute_folder, + ) mock_catalog_handler_get = mocker.MagicMock() mock_catalog_handler_get.return_value = ["data_catalog"] @@ -255,16 +306,25 @@ def test_sync_catalog_calls_get_from_catalog_handler(mocker, monkeypatch, mock_r data_catalogs = test_executor._sync_catalog(stage="get") assert data_catalogs == ["data_catalog"] - mock_catalog_handler_get.assert_called_once_with(name="me", run_id="run_id", compute_data_folder="compute_folder") + mock_catalog_handler_get.assert_called_once_with( + name="me", run_id="run_id", compute_data_folder="compute_folder" + ) -def test_sync_catalog_calls_get_from_catalog_handler_as_per_input(mocker, monkeypatch, mock_run_context): - mock_node = mocker.MagicMock() - mock_node._get_catalog_settings.return_value = {"get": ["me", "you"], "put": []} - mock_step_log = mocker.MagicMock() +def test_sync_catalog_calls_get_from_catalog_handler_as_per_input( + mocker, monkeypatch, mock_run_context, mock_base_node +): + mock_node = mock_base_node() + setattr( + mock_node, "_get_catalog_settings", lambda: {"get": ["me", "you"], "put": []} + ) mock_get_effective_compute_folder = mocker.MagicMock(return_value="compute_folder") - monkeypatch.setattr(GenericExecutor, "get_effective_compute_data_folder", mock_get_effective_compute_folder) + monkeypatch.setattr( + GenericExecutor, + "get_effective_compute_data_folder", + mock_get_effective_compute_folder, + ) mock_catalog_handler_get = mocker.MagicMock() mock_catalog_handler_get.return_value = ["data_catalog"] @@ -280,13 +340,18 @@ def test_sync_catalog_calls_get_from_catalog_handler_as_per_input(mocker, monkey assert mock_catalog_handler_get.call_count == 2 -def test_sync_catalog_calls_put_from_catalog_handler(mocker, monkeypatch, mock_run_context): - mock_node = mocker.MagicMock() - mock_node._get_catalog_settings.return_value = {"get": [], "put": ["me"]} - mock_step_log = mocker.MagicMock() +def test_sync_catalog_calls_put_from_catalog_handler( + mocker, monkeypatch, mock_run_context, mock_base_node +): + mock_node = mock_base_node() + setattr(mock_node, "_get_catalog_settings", lambda: {"get": [], "put": ["me"]}) mock_get_effective_compute_folder = mocker.MagicMock(return_value="compute_folder") - monkeypatch.setattr(GenericExecutor, "get_effective_compute_data_folder", mock_get_effective_compute_folder) + monkeypatch.setattr( + GenericExecutor, + "get_effective_compute_data_folder", + mock_get_effective_compute_folder, + ) mock_catalog_handler_put = mocker.MagicMock() mock_catalog_handler_put.return_value = ["data_catalog"] @@ -300,17 +365,27 @@ def test_sync_catalog_calls_put_from_catalog_handler(mocker, monkeypatch, mock_r assert data_catalogs == ["data_catalog"] mock_catalog_handler_put.assert_called_once_with( - name="me", run_id="run_id", compute_data_folder="compute_folder", synced_catalogs=None + name="me", + run_id="run_id", + compute_data_folder="compute_folder", + synced_catalogs=None, ) -def test_sync_catalog_calls_put_from_catalog_handler_as_per_input(mocker, monkeypatch, mock_run_context): - mock_node = mocker.MagicMock() - mock_node._get_catalog_settings.return_value = {"get": [], "put": ["me", "you"]} - mock_step_log = mocker.MagicMock() +def test_sync_catalog_calls_put_from_catalog_handler_as_per_input( + mocker, monkeypatch, mock_run_context, mock_base_node +): + mock_node = mock_base_node() + setattr( + mock_node, "_get_catalog_settings", lambda: {"get": [], "put": ["me", "you"]} + ) mock_get_effective_compute_folder = mocker.MagicMock(return_value="compute_folder") - monkeypatch.setattr(GenericExecutor, "get_effective_compute_data_folder", mock_get_effective_compute_folder) + monkeypatch.setattr( + GenericExecutor, + "get_effective_compute_data_folder", + mock_get_effective_compute_folder, + ) mock_catalog_handler_put = mocker.MagicMock() mock_catalog_handler_put.return_value = ["data_catalog"] @@ -326,13 +401,18 @@ def test_sync_catalog_calls_put_from_catalog_handler_as_per_input(mocker, monkey assert mock_catalog_handler_put.call_count == 2 -def test_sync_catalog_calls_put_sends_synced_catalogs_to_catalog_handler(mocker, monkeypatch, mock_run_context): - mock_node = mocker.MagicMock() - mock_node._get_catalog_settings.return_value = {"get": [], "put": ["me"]} - mock_step_log = mocker.MagicMock() +def test_sync_catalog_calls_put_sends_synced_catalogs_to_catalog_handler( + mocker, monkeypatch, mock_run_context, mock_base_node +): + mock_node = mock_base_node() + setattr(mock_node, "_get_catalog_settings", lambda: {"get": [], "put": ["me"]}) mock_get_effective_compute_folder = mocker.MagicMock(return_value="compute_folder") - monkeypatch.setattr(GenericExecutor, "get_effective_compute_data_folder", mock_get_effective_compute_folder) + monkeypatch.setattr( + GenericExecutor, + "get_effective_compute_data_folder", + mock_get_effective_compute_folder, + ) mock_catalog_handler_put = mocker.MagicMock() mock_catalog_handler_put.return_value = ["data_catalog"] @@ -346,15 +426,20 @@ def test_sync_catalog_calls_put_sends_synced_catalogs_to_catalog_handler(mocker, assert data_catalogs == ["data_catalog"] mock_catalog_handler_put.assert_called_once_with( - name="me", run_id="run_id", compute_data_folder="compute_folder", synced_catalogs="in_sync" + name="me", + run_id="run_id", + compute_data_folder="compute_folder", + synced_catalogs="in_sync", ) -def test_get_effective_compute_data_folder_returns_default(mocker, mock_run_context): +def test_get_effective_compute_data_folder_returns_default( + mocker, mock_run_context, mock_base_node +): mock_run_context.catalog_handler.compute_data_folder = "default" - mock_node = mocker.MagicMock() - mock_node._get_catalog_settings.return_value = {} + mock_node = mock_base_node() + setattr(mock_node, "_get_catalog_settings", lambda: {}) test_executor = GenericExecutor() test_executor._context_node = mock_node @@ -362,11 +447,17 @@ def test_get_effective_compute_data_folder_returns_default(mocker, mock_run_cont assert test_executor.get_effective_compute_data_folder() == "default" -def test_get_effective_compute_data_folder_returns_from_node_settings(mocker, mock_run_context): +def test_get_effective_compute_data_folder_returns_from_node_settings( + mocker, mock_run_context, mock_base_node +): mock_run_context.catalog_handler.compute_data_folder = "default" - mock_node = mocker.MagicMock() - mock_node._get_catalog_settings.return_value = {"compute_data_folder": "not_default"} + mock_node = mock_base_node() + setattr( + mock_node, + "_get_catalog_settings", + lambda: {"compute_data_folder": "not_default"}, + ) test_executor = GenericExecutor() test_executor._context_node = mock_node @@ -388,20 +479,33 @@ def test_step_attempt_returns_from_env(monkeypatch): assert test_executor.step_attempt_number == 2 -def test_base_executor_resolve_executor_config_gives_global_config_if_node_does_not_override(mocker, mock_run_context): - mock_node = mocker.MagicMock() - mock_node._get_executor_config.return_value = {} +def test_base_executor_resolve_executor_config_gives_global_config_if_node_does_not_override( + mocker, mock_run_context, mock_base_node +): + mock_node = mock_base_node() + setattr(mock_node, "_get_catalog_settings", lambda: {}) mock_run_context.variables = {} test_executor = GenericExecutor() - assert test_executor._resolve_executor_config(mock_node) == {**test_executor.model_dump()} + assert test_executor._resolve_executor_config(mock_node) == { + **test_executor.model_dump() + } -def test_get_status_and_next_node_name_returns_empty_for_terminal_node(mocker, monkeypatch, mock_run_context): - mock_node = mocker.MagicMock() - mock_node._get_next_node = mocker.MagicMock(side_effect=exceptions.TerminalNodeError) +def test_get_status_and_next_node_name_returns_empty_for_terminal_node( + mocker, monkeypatch, mock_run_context, mock_base_node +): + mock_node = mock_base_node() + + def f(): + raise exceptions.TerminalNodeError() + + setattr(mock_node, "_get_catalog_settings", f) + mock_node._get_next_node = mocker.MagicMock( + side_effect=exceptions.TerminalNodeError + ) mock_step_log = mocker.MagicMock() mock_step_log.status = defaults.SUCCESS @@ -409,12 +513,17 @@ def test_get_status_and_next_node_name_returns_empty_for_terminal_node(mocker, m test_executor = GenericExecutor() - assert test_executor._get_status_and_next_node_name(mock_node, "dag") == (defaults.SUCCESS, "") + assert test_executor._get_status_and_next_node_name(mock_node, "dag") == ( + defaults.SUCCESS, + "", + ) -def test_get_status_and_next_node_name_returns_next_node_if_success(mocker, monkeypatch, mock_run_context): - mock_node = mocker.MagicMock() - mock_node._get_next_node.return_value = "next_node" +def test_get_status_and_next_node_name_returns_next_node_if_success( + mocker, monkeypatch, mock_run_context, mock_base_node +): + mock_node = mock_base_node() + setattr(mock_node, "_get_next_node", lambda: "next_node") mock_step_log = mocker.MagicMock() mock_step_log.status = defaults.SUCCESS @@ -422,13 +531,18 @@ def test_get_status_and_next_node_name_returns_next_node_if_success(mocker, monk test_executor = GenericExecutor() - assert test_executor._get_status_and_next_node_name(mock_node, "dag") == (defaults.SUCCESS, "next_node") + assert test_executor._get_status_and_next_node_name(mock_node, "dag") == ( + defaults.SUCCESS, + "next_node", + ) -def test_get_status_and_next_node_name_returns_terminal_node_in_case_of_failure(mocker, monkeypatch, mock_run_context): - mock_node = mocker.MagicMock() - mock_node._get_next_node.return_value = "next_node" - mock_node._get_on_failure_node.return_value = "" +def test_get_status_and_next_node_name_returns_terminal_node_in_case_of_failure( + mocker, monkeypatch, mock_run_context, mock_base_node +): + mock_node = mock_base_node() + setattr(mock_node, "_get_next_node", lambda: "next node") + setattr(mock_node, "_get_on_failure_node", lambda: "") mock_run_context.run_log_store.get_step_log.return_value.status = defaults.FAIL @@ -437,13 +551,18 @@ def test_get_status_and_next_node_name_returns_terminal_node_in_case_of_failure( test_executor = GenericExecutor() - assert test_executor._get_status_and_next_node_name(mock_node, mock_dag) == (defaults.FAIL, "fail_node") + assert test_executor._get_status_and_next_node_name(mock_node, mock_dag) == ( + defaults.FAIL, + "fail_node", + ) -def test_get_status_and_next_node_name_returns_on_failure_node_if_failed(mocker, monkeypatch, mock_run_context): - mock_node = mocker.MagicMock() - mock_node._get_next_node.return_value = "next_node" - mock_node._get_on_failure_node.return_value = "me_please" +def test_get_status_and_next_node_name_returns_on_failure_node_if_failed( + mocker, monkeypatch, mock_run_context, mock_base_node +): + mock_node = mock_base_node() + setattr(mock_node, "_get_next_node", lambda: "next_node") + setattr(mock_node, "_get_on_failure_node", lambda: "me_please") mock_run_context.run_log_store.get_step_log.return_value.status = defaults.FAIL @@ -452,10 +571,15 @@ def test_get_status_and_next_node_name_returns_on_failure_node_if_failed(mocker, test_executor = GenericExecutor() - assert test_executor._get_status_and_next_node_name(mock_node, mock_dag) == (defaults.FAIL, "me_please") + assert test_executor._get_status_and_next_node_name(mock_node, mock_dag) == ( + defaults.FAIL, + "me_please", + ) -def test_send_return_code_raises_exception_if_pipeline_execution_failed(mocker, mock_run_context): +def test_send_return_code_raises_exception_if_pipeline_execution_failed( + mocker, mock_run_context +): mock_run_context.run_log_store.get_run_log_by_id.return_value.status = defaults.FAIL test_executor = GenericExecutor() @@ -464,8 +588,16 @@ def test_send_return_code_raises_exception_if_pipeline_execution_failed(mocker, test_executor.send_return_code() -def test_send_return_code_does_not_raise_exception_if_pipeline_execution_succeeded(mocker, mock_run_context): - mock_run_context.run_log_store.get_run_log_by_id.return_value.status = defaults.SUCCESS +def test_send_return_code_does_not_raise_exception_if_pipeline_execution_succeeded( + mocker, mock_run_context +): + mock_run_context.run_log_store.get_run_log_by_id.return_value.status = ( + defaults.SUCCESS + ) test_executor = GenericExecutor() test_executor.send_return_code() + + +from extensions import executor as module +from extensions.executor import GenericExecutor diff --git a/tests/runnable/extensions/executor/test_local_container_integration.py b/tests/extensions/executor/test_local_container_integration.py similarity index 52% rename from tests/runnable/extensions/executor/test_local_container_integration.py rename to tests/extensions/executor/test_local_container_integration.py index 59937d61..d62d0396 100644 --- a/tests/runnable/extensions/executor/test_local_container_integration.py +++ b/tests/extensions/executor/test_local_container_integration.py @@ -1,11 +1,15 @@ from pathlib import Path -from runnable.extensions.executor.local_container import implementation +from extensions.executor import local_container as module def test_configure_for_traversal_populates_volumes(mocker, monkeypatch): mock_local_container = mocker.MagicMock() - monkeypatch.setattr(implementation, "LocalContainerComputeFileSystemRunLogstore", mock_local_container) + monkeypatch.setattr( + module, + "LocalContainerComputeFileSystemRunLogstore", + mock_local_container, + ) mock_executor = mocker.MagicMock() mock_executor._volumes = {} @@ -14,22 +18,34 @@ def test_configure_for_traversal_populates_volumes(mocker, monkeypatch): mock_fs_catalog = mocker.MagicMock() mock_fs_catalog.catalog_location = "catalog_location" - test_integration = implementation.LocalContainerComputeFileSystemCatalog(mock_executor, mock_fs_catalog) + test_integration = module.LocalContainerComputeFileSystemCatalog( + mock_executor, mock_fs_catalog + ) test_integration.configure_for_traversal() - assert mock_executor._volumes == {str(Path("catalog_location").resolve()): {"bind": "this_location", "mode": "rw"}} + assert mock_executor._volumes == { + str(Path("catalog_location").resolve()): {"bind": "this_location", "mode": "rw"} + } -def test_configure_for_execution_assigns_catalog_location_within_container(mocker, monkeypatch): +def test_configure_for_execution_assigns_catalog_location_within_container( + mocker, monkeypatch +): mock_local_container = mocker.MagicMock() - monkeypatch.setattr(implementation, "LocalContainerComputeFileSystemRunLogstore", mock_local_container) + monkeypatch.setattr( + module, + "LocalContainerComputeFileSystemRunLogstore", + mock_local_container, + ) mock_executor = mocker.MagicMock() mock_executor._container_catalog_location = "this_location" mock_fs_catalog = mocker.MagicMock() - test_integration = implementation.LocalContainerComputeFileSystemCatalog(mock_executor, mock_fs_catalog) + test_integration = module.LocalContainerComputeFileSystemCatalog( + mock_executor, mock_fs_catalog + ) test_integration.configure_for_execution() assert mock_fs_catalog.catalog_location == "this_location" diff --git a/tests/runnable/extensions/executor/test_local_executor.py b/tests/extensions/executor/test_local_executor.py similarity index 85% rename from tests/runnable/extensions/executor/test_local_executor.py rename to tests/extensions/executor/test_local_executor.py index 1f0b6121..af3333a0 100644 --- a/tests/runnable/extensions/executor/test_local_executor.py +++ b/tests/extensions/executor/test_local_executor.py @@ -1,4 +1,4 @@ -from runnable.extensions.executor.local import LocalExecutor +from extensions.executor.local import LocalExecutor def test_local_executor_execute_node_just_calls___execute_node(mocker, monkeypatch): diff --git a/runnable/extensions/executor/retry/__init__.py b/tests/extensions/run_log_store/__init__.py similarity index 100% rename from runnable/extensions/executor/retry/__init__.py rename to tests/extensions/run_log_store/__init__.py diff --git a/tests/runnable/extensions/run_log_store/test_file_system.py b/tests/extensions/run_log_store/test_file_system.py similarity index 60% rename from tests/runnable/extensions/run_log_store/test_file_system.py rename to tests/extensions/run_log_store/test_file_system.py index 8625e12a..c7f7fabe 100644 --- a/tests/runnable/extensions/run_log_store/test_file_system.py +++ b/tests/extensions/run_log_store/test_file_system.py @@ -1,9 +1,8 @@ import pytest -from runnable.extensions.run_log_store.file_system.implementation import FileSystemRunLogstore -import runnable.extensions.run_log_store.file_system.implementation as implementation -from runnable import defaults -from runnable import exceptions +import extensions.run_log_store.file_system as module +from extensions.run_log_store.file_system import FileSystemRunLogstore +from runnable import defaults, exceptions def test_file_system_run_log_store_log_folder_name_defaults_if_not_provided(): @@ -18,14 +17,16 @@ def test_file_system_run_log_store_log_folder_name_if__provided(): assert run_log_store.log_folder_name == "test" -def test_file_system_run_log_store_write_to_folder_makes_dir_if_not_present(mocker, monkeypatch): +def test_file_system_run_log_store_write_to_folder_makes_dir_if_not_present( + mocker, monkeypatch +): mock_safe_make_dir = mocker.MagicMock() - monkeypatch.setattr(implementation.utils, "safe_make_dir", mock_safe_make_dir) + monkeypatch.setattr(module.utils, "safe_make_dir", mock_safe_make_dir) mock_json = mocker.MagicMock() mock_path = mocker.MagicMock() - monkeypatch.setattr(implementation, "json", mock_json) - monkeypatch.setattr(implementation, "Path", mock_path) + monkeypatch.setattr(module, "json", mock_json) + monkeypatch.setattr(module, "Path", mock_path) mock_run_log = mocker.MagicMock() mock_dict = mocker.MagicMock() @@ -38,32 +39,36 @@ def test_file_system_run_log_store_write_to_folder_makes_dir_if_not_present(mock assert mock_dict.call_count == 1 -def test_file_system_run_log_store_get_from_folder_raises_exception_if_folder_not_present(mocker, monkeypatch): +def test_file_system_run_log_store_get_from_folder_raises_exception_if_folder_not_present( + mocker, monkeypatch +): mock_path = mocker.MagicMock() - monkeypatch.setattr(implementation, "Path", mocker.MagicMock(return_value=mock_path)) + monkeypatch.setattr(module, "Path", mocker.MagicMock(return_value=mock_path)) mock_path.__truediv__.return_value = mock_path mock_path.exists.return_value = False - run_log_store = implementation.FileSystemRunLogstore() + run_log_store = module.FileSystemRunLogstore() with pytest.raises(FileNotFoundError): run_log_store.get_from_folder(run_id="test") -def test_file_system_run_log_store_get_from_folder_returns_run_log_from_file_contents(mocker, monkeypatch): +def test_file_system_run_log_store_get_from_folder_returns_run_log_from_file_contents( + mocker, monkeypatch +): mock_path = mocker.MagicMock() - monkeypatch.setattr(implementation, "Path", mocker.MagicMock(return_value=mock_path)) + monkeypatch.setattr(module, "Path", mocker.MagicMock(return_value=mock_path)) mock_path.__truediv__.return_value = mock_path mock_path.exists.return_value = True mock_json = mocker.MagicMock() - monkeypatch.setattr(implementation, "json", mock_json) + monkeypatch.setattr(module, "json", mock_json) mock_json.load.return_value = {"run_id": "test"} - run_log_store = implementation.FileSystemRunLogstore() + run_log_store = module.FileSystemRunLogstore() run_log = run_log_store.get_from_folder(run_id="does not matter") assert run_log.run_id == "test" @@ -72,9 +77,11 @@ def test_file_system_run_log_store_get_from_folder_returns_run_log_from_file_con def test_file_system_run_log_store_create_run_log_writes_to_folder(mocker, monkeypatch): mock_write_to_folder = mocker.MagicMock() - monkeypatch.setattr(implementation.FileSystemRunLogstore, "write_to_folder", mock_write_to_folder) + monkeypatch.setattr( + module.FileSystemRunLogstore, "write_to_folder", mock_write_to_folder + ) - run_log_store = implementation.FileSystemRunLogstore() + run_log_store = module.FileSystemRunLogstore() run_log = run_log_store.create_run_log(run_id="test random") mock_write_to_folder.assert_called_once_with(run_log) @@ -82,36 +89,52 @@ def test_file_system_run_log_store_create_run_log_writes_to_folder(mocker, monke assert run_log.run_id == "test random" -def test_file_system_run_log_store_create_run_log_raises_exception_if_present(mocker, monkeypatch): +def test_file_system_run_log_store_create_run_log_raises_exception_if_present( + mocker, monkeypatch +): mock_write_to_folder = mocker.MagicMock() mock_get_run_log_by_id = mocker.MagicMock(return_value="existing") - monkeypatch.setattr(implementation.FileSystemRunLogstore, "write_to_folder", mock_write_to_folder) - monkeypatch.setattr(implementation.FileSystemRunLogstore, "get_run_log_by_id", mock_get_run_log_by_id) + monkeypatch.setattr( + module.FileSystemRunLogstore, "write_to_folder", mock_write_to_folder + ) + monkeypatch.setattr( + module.FileSystemRunLogstore, + "get_run_log_by_id", + mock_get_run_log_by_id, + ) - run_log_store = implementation.FileSystemRunLogstore() + run_log_store = module.FileSystemRunLogstore() with pytest.raises(exceptions.RunLogExistsError): run_log_store.create_run_log(run_id="test random") -def test_file_system_run_log_store_get_run_log_by_id_raises_exception_if_get_from_folder_fails(mocker, monkeypatch): +def test_file_system_run_log_store_get_run_log_by_id_raises_exception_if_get_from_folder_fails( + mocker, monkeypatch +): mock_get_from_folder = mocker.MagicMock() mock_get_from_folder.side_effect = FileNotFoundError() - monkeypatch.setattr(implementation.FileSystemRunLogstore, "get_from_folder", mock_get_from_folder) + monkeypatch.setattr( + module.FileSystemRunLogstore, "get_from_folder", mock_get_from_folder + ) - run_log_store = implementation.FileSystemRunLogstore() + run_log_store = module.FileSystemRunLogstore() with pytest.raises(exceptions.RunLogNotFoundError): run_log_store.get_run_log_by_id(run_id="should fail") -def test_file_system_run_log_store_get_run_log_by_id_returns_run_log_from_get_from_folder(mocker, monkeypatch): +def test_file_system_run_log_store_get_run_log_by_id_returns_run_log_from_get_from_folder( + mocker, monkeypatch +): mock_get_from_folder = mocker.MagicMock() mock_get_from_folder.return_value = "I am a run log" - monkeypatch.setattr(implementation.FileSystemRunLogstore, "get_from_folder", mock_get_from_folder) + monkeypatch.setattr( + module.FileSystemRunLogstore, "get_from_folder", mock_get_from_folder + ) - run_log_store = implementation.FileSystemRunLogstore() + run_log_store = module.FileSystemRunLogstore() run_log = run_log_store.get_run_log_by_id(run_id="test") @@ -121,9 +144,11 @@ def test_file_system_run_log_store_get_run_log_by_id_returns_run_log_from_get_fr def test_file_system_run_log_store_put_run_log_writes_to_folder(mocker, monkeypatch): mock_write_to_folder = mocker.MagicMock() - monkeypatch.setattr(implementation.FileSystemRunLogstore, "write_to_folder", mock_write_to_folder) + monkeypatch.setattr( + module.FileSystemRunLogstore, "write_to_folder", mock_write_to_folder + ) - run_log_store = implementation.FileSystemRunLogstore() + run_log_store = module.FileSystemRunLogstore() mock_run_log = mocker.MagicMock() run_log_store.put_run_log(run_log=mock_run_log) diff --git a/tests/extensions/secrets/test_dotenv.py b/tests/extensions/secrets/test_dotenv.py new file mode 100644 index 00000000..1d41db6c --- /dev/null +++ b/tests/extensions/secrets/test_dotenv.py @@ -0,0 +1,17 @@ +from extensions.secrets.dotenv import DotEnvSecrets +from runnable import defaults + + +def test_dot_env_secrets_defaults_to_default_location_if_none_provided( + mocker, monkeypatch +): + dot_env_secret = DotEnvSecrets() + assert dot_env_secret.secrets_location == defaults.DOTENV_FILE_LOCATION + + +def test_dot_env_secrets_usees_location_if_provided(mocker, monkeypatch): + dot_env_secret = DotEnvSecrets(location="here") + assert dot_env_secret.location == "here" + + +# TODO: dotenv testing diff --git a/tests/runnable/extensions/test_node_extensions.py b/tests/extensions/test_node_extensions.py similarity index 85% rename from tests/runnable/extensions/test_node_extensions.py rename to tests/extensions/test_node_extensions.py index 3218b933..29fe2993 100644 --- a/tests/runnable/extensions/test_node_extensions.py +++ b/tests/extensions/test_node_extensions.py @@ -1,7 +1,6 @@ import pytest from runnable import defaults -from runnable.extensions import nodes as nodes from runnable.tasks import BaseTaskType @@ -11,7 +10,9 @@ def instantiable_base_class(monkeypatch): yield -def test_task_node_parse_from_config_seperates_task_from_node_confifg(mocker, monkeypatch): +def test_task_node_parse_from_config_seperates_task_from_node_confifg( + mocker, monkeypatch +): base_task = BaseTaskType(task_type="dummy") mock_create_task = mocker.MagicMock(return_value=base_task) @@ -34,10 +35,14 @@ def test_task_node_mocks_if_mock_is_true(mocker, monkeypatch): mock_context = mocker.MagicMock() monkeypatch.setattr(nodes.TaskNode, "_context", mock_context) - mock_context.run_log_store.create_attempt_log = mocker.MagicMock(return_value=mock_attempt_log) + mock_context.run_log_store.create_attempt_log = mocker.MagicMock( + return_value=mock_attempt_log + ) base_task = BaseTaskType(task_type="dummy") - task_node = nodes.TaskNode(name="test", internal_name="test", next_node="next_node", executable=base_task) + task_node = nodes.TaskNode( + name="test", internal_name="test", next_node="next_node", executable=base_task + ) attempt_log = task_node.execute(mock=True) @@ -65,7 +70,9 @@ def test_parallel_node_parse_from_config_creates_sub_graph(mocker, monkeypatch): assert branch == graph -def test_parallel_node_parse_from_config_raises_exception_if_no_branches(mocker, monkeypatch): +def test_parallel_node_parse_from_config_raises_exception_if_no_branches( + mocker, monkeypatch +): config = { "branches": {}, "next_node": "next_node", @@ -127,25 +134,41 @@ def test_dag_node_fails_non_yaml_dag_definition(mocker, monkeypatch): graph = nodes.Graph(start_at="first", name="first_branch") with pytest.raises(ValueError, match="dag_definition must be a YAML"): - _ = nodes.DagNode(name="test", internal_name="test", next_node="next", dag_definition="notanyaml", branch=graph) + _ = nodes.DagNode( + name="test", + internal_name="test", + next_node="next", + dag_definition="notanyaml", + branch=graph, + ) def test_dag_node_sets_internal_branch_name(mocker, monkeypatch): graph = nodes.Graph(start_at="first", name="first_branch") - node = nodes.DagNode(name="test", internal_name="test", next_node="next", dag_definition="a.yaml", branch=graph) + node = nodes.DagNode( + name="test", + internal_name="test", + next_node="next", + dag_definition="a.yaml", + branch=graph, + ) assert node.internal_branch_name == f"test.{defaults.DAG_BRANCH_NAME}" -def test_dag_node_parse_config_raises_exception_if_dag_definition_is_not_part_of_config(mocker, monkeypatch): +def test_dag_node_parse_config_raises_exception_if_dag_definition_is_not_part_of_config( + mocker, monkeypatch +): config = {} with pytest.raises(Exception, match="No dag definition found in"): _ = nodes.DagNode.parse_from_config(config=config) -def test_dag_node_parse_config_raises_exception_if_dag_definition_is_not_yaml(mocker, monkeypatch): +def test_dag_node_parse_config_raises_exception_if_dag_definition_is_not_yaml( + mocker, monkeypatch +): monkeypatch.setattr(nodes.utils, "load_yaml", mocker.MagicMock(return_value={})) config = {"dag_definition": "notanyaml"} @@ -159,7 +182,11 @@ def test_parse_config_calls_create_graph(mocker, monkeypatch): mock_create_graph = mocker.MagicMock(return_value=graph) monkeypatch.setattr(nodes, "create_graph", mock_create_graph) - monkeypatch.setattr(nodes.utils, "load_yaml", mocker.MagicMock(return_value={"dag": {"name": "test"}})) + monkeypatch.setattr( + nodes.utils, + "load_yaml", + mocker.MagicMock(return_value={"dag": {"name": "test"}}), + ) config = { "next_node": "next_node", @@ -179,7 +206,11 @@ def test_dag_node_get_branch_by_name_returns_branch(mocker, monkeypatch): mock_create_graph = mocker.MagicMock(return_value=graph) monkeypatch.setattr(nodes, "create_graph", mock_create_graph) - monkeypatch.setattr(nodes.utils, "load_yaml", mocker.MagicMock(return_value={"dag": {"name": "test"}})) + monkeypatch.setattr( + nodes.utils, + "load_yaml", + mocker.MagicMock(return_value={"dag": {"name": "test"}}), + ) config = { "next_node": "next_node", @@ -193,12 +224,18 @@ def test_dag_node_get_branch_by_name_returns_branch(mocker, monkeypatch): assert dag_node._get_branch_by_name(f"parent.{defaults.DAG_BRANCH_NAME}") == graph -def test_dag_node_get_branch_by_name_raises_exception_if_incorrect_name(mocker, monkeypatch): +def test_dag_node_get_branch_by_name_raises_exception_if_incorrect_name( + mocker, monkeypatch +): graph = nodes.Graph(start_at="first", name="first_branch") mock_create_graph = mocker.MagicMock(return_value=graph) monkeypatch.setattr(nodes, "create_graph", mock_create_graph) - monkeypatch.setattr(nodes.utils, "load_yaml", mocker.MagicMock(return_value={"dag": {"name": "test"}})) + monkeypatch.setattr( + nodes.utils, + "load_yaml", + mocker.MagicMock(return_value={"dag": {"name": "test"}}), + ) config = { "next_node": "next_node", @@ -223,3 +260,6 @@ def test__as_is_node_takes_anything_as_input(mocker, monkeypatch): } _ = nodes.StubNode.parse_from_config(config=config) + + +from extensions.nodes import nodes diff --git a/tests/runnable/extensions/__init__.py b/tests/runnable/extensions/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/tests/runnable/extensions/catalog/test_k8s_pvc.py b/tests/runnable/extensions/catalog/test_k8s_pvc.py deleted file mode 100644 index e53c04a8..00000000 --- a/tests/runnable/extensions/catalog/test_k8s_pvc.py +++ /dev/null @@ -1,7 +0,0 @@ -from runnable.extensions.catalog.k8s_pvc.implementation import K8sPVCatalog - - -def test_get_catalog_location_returns_location_relative_to_mount_path(): - test_catalog = K8sPVCatalog(catalog_location="test_location", mount_path="/here", persistent_volume_name="test") - - assert test_catalog.get_catalog_location() == "/here/test_location" diff --git a/tests/runnable/extensions/catalog/test_k8s_pvc_integration.py b/tests/runnable/extensions/catalog/test_k8s_pvc_integration.py deleted file mode 100644 index b2cd0e13..00000000 --- a/tests/runnable/extensions/catalog/test_k8s_pvc_integration.py +++ /dev/null @@ -1,17 +0,0 @@ -import pytest - -from runnable.extensions.catalog.k8s_pvc import integration - - -def test_k8s_pvc_errors_for_local(): - test_integration = integration.LocalCompute(executor="executor", integration_service="catalog") - - with pytest.raises(Exception, match="We can't use the local compute"): - test_integration.validate() - - -def test_k8s_pvc_errors_for_local_container(): - test_integration = integration.LocalContainerCompute(executor="executor", integration_service="catalog") - - with pytest.raises(Exception, match="We can't use the local-container compute"): - test_integration.validate() diff --git a/tests/runnable/extensions/run_log_store/__init__.py b/tests/runnable/extensions/run_log_store/__init__.py deleted file mode 100644 index e69de29b..00000000 diff --git a/tests/runnable/extensions/run_log_store/test_chunked_k8s_pvc_integration.py b/tests/runnable/extensions/run_log_store/test_chunked_k8s_pvc_integration.py deleted file mode 100644 index b17c1dc8..00000000 --- a/tests/runnable/extensions/run_log_store/test_chunked_k8s_pvc_integration.py +++ /dev/null @@ -1,17 +0,0 @@ -import pytest - -from runnable.extensions.run_log_store.chunked_k8s_pvc import integration - - -def test_k8s_pvc_errors_for_local(): - test_integration = integration.LocalCompute(executor="executor", integration_service="catalog") - - with pytest.raises(Exception, match="We can't use the local compute"): - test_integration.validate() - - -def test_k8s_pvc_errors_for_local_container(): - test_integration = integration.LocalContainerCompute(executor="executor", integration_service="catalog") - - with pytest.raises(Exception, match="We can't use the local-container compute"): - test_integration.validate() diff --git a/tests/runnable/extensions/run_log_store/test_generic_chunked.py b/tests/runnable/extensions/run_log_store/test_generic_chunked.py deleted file mode 100644 index 9b003829..00000000 --- a/tests/runnable/extensions/run_log_store/test_generic_chunked.py +++ /dev/null @@ -1 +0,0 @@ -from runnable.extensions.run_log_store import generic_chunked diff --git a/tests/runnable/extensions/run_log_store/test_k8s_pvc_integration.py b/tests/runnable/extensions/run_log_store/test_k8s_pvc_integration.py deleted file mode 100644 index 64b9ab8c..00000000 --- a/tests/runnable/extensions/run_log_store/test_k8s_pvc_integration.py +++ /dev/null @@ -1,17 +0,0 @@ -import pytest - -from runnable.extensions.run_log_store.k8s_pvc import integration - - -def test_k8s_pvc_errors_for_local(): - test_integration = integration.LocalCompute(executor="executor", integration_service="catalog") - - with pytest.raises(Exception, match="We can't use the local compute"): - test_integration.validate() - - -def test_k8s_pvc_errors_for_local_container(): - test_integration = integration.LocalContainerCompute(executor="executor", integration_service="catalog") - - with pytest.raises(Exception, match="We can't use the local-container compute"): - test_integration.validate() diff --git a/tests/runnable/extensions/secrets/test_dotenv.py b/tests/runnable/extensions/secrets/test_dotenv.py deleted file mode 100644 index c195c162..00000000 --- a/tests/runnable/extensions/secrets/test_dotenv.py +++ /dev/null @@ -1,72 +0,0 @@ -import pytest - -from runnable import defaults, exceptions - -from runnable.extensions.secrets.dotenv.implementation import DotEnvSecrets -import runnable.extensions.secrets.dotenv.implementation as implementation - - -def test_dot_env_secrets_defaults_to_default_location_if_none_provided(mocker, monkeypatch): - dot_env_secret = DotEnvSecrets() - assert dot_env_secret.secrets_location == defaults.DOTENV_FILE_LOCATION - - -def test_dot_env_secrets_usees_location_if_provided(mocker, monkeypatch): - dot_env_secret = DotEnvSecrets(location="here") - assert dot_env_secret.location == "here" - - -def test_dot_env_secrets_get_returns_secret_if_one_provided(mocker, monkeypatch): - dot_env_secret = DotEnvSecrets(location="here") - dot_env_secret.secrets["give"] = "this" - - assert dot_env_secret.get("give") == "this" - - -def test_dot_env_secrets_raises_exception_if_secret_not_found(mocker, monkeypatch): - monkeypatch.setattr(DotEnvSecrets, "_load_secrets", mocker.MagicMock()) - - dot_env_secret = DotEnvSecrets(location="here") - dot_env_secret.secrets["give"] = "this" - - with pytest.raises(expected_exception=exceptions.SecretNotFoundError): - dot_env_secret.get("give1") - - -def test_dot_env_load_secrets_raises_exception_if_file_does_not_exist(mocker, monkeypatch): - monkeypatch.setattr(implementation.utils, "does_file_exist", mocker.MagicMock(return_value=False)) - - dot_env_secret = DotEnvSecrets(location="here") - - with pytest.raises(Exception, match="Did not find the secrets file"): - dot_env_secret._load_secrets() - - -def test_dot_env_load_secrets_raises_exception_if_secret_formatting_is_invalid(mocker, monkeypatch): - monkeypatch.setattr(implementation.utils, "does_file_exist", mocker.MagicMock(return_value=True)) - - dot_env_secret = DotEnvSecrets(location="here") - - with pytest.raises(Exception, match="A secret should be of format, secret_name=secret_value"): - mocker.patch("builtins.open", mocker.mock_open(read_data="data")) - dot_env_secret._load_secrets() - - -def test_dot_env_load_secrets_raises_exception_if_secret_formatting_is_invalid_ge_2(mocker, monkeypatch): - monkeypatch.setattr(implementation.utils, "does_file_exist", mocker.MagicMock(return_value=True)) - - dot_env_secret = DotEnvSecrets(location="here") - - with pytest.raises(Exception, match="A secret should be of format, secret_name=secret_value"): - mocker.patch("builtins.open", mocker.mock_open(read_data="data=data1=")) - dot_env_secret._load_secrets() - - -def test_dot_env_load_secrets_populates_correct_secrets_if_valid(mocker, monkeypatch): - monkeypatch.setattr(implementation.utils, "does_file_exist", mocker.MagicMock(return_value=True)) - - dot_env_secret = DotEnvSecrets(location="here") - - mocker.patch("builtins.open", mocker.mock_open(read_data="data=data1\n")) - dot_env_secret._load_secrets() - assert dot_env_secret.secrets == {"data": "data1"} diff --git a/tests/runnable/test_catalog.py b/tests/runnable/test_catalog.py index 8660a422..e643c209 100644 --- a/tests/runnable/test_catalog.py +++ b/tests/runnable/test_catalog.py @@ -12,7 +12,9 @@ def instantiable_base_class(monkeypatch): yield -def test_base_run_log_store_context_property(mocker, monkeypatch, instantiable_base_class): +def test_base_run_log_store_context_property( + mocker, monkeypatch, instantiable_base_class +): mock_run_context = mocker.Mock() monkeypatch.setattr(catalog.context, "run_context", mock_run_context) @@ -38,7 +40,9 @@ def test_base_catalog_sync_between_runs_raises_exception(instantiable_base_class base_catalog.sync_between_runs(previous_run_id=1, run_id=2) -def test_base_catalog_config_default_compute_folder_if_none_config(instantiable_base_class): +def test_base_catalog_config_default_compute_folder_if_none_config( + instantiable_base_class, +): assert catalog.BaseCatalog().compute_data_folder == defaults.COMPUTE_DATA_FOLDER diff --git a/tests/runnable/test_datastore.py b/tests/runnable/test_datastore.py index 996f619e..a5848fa9 100644 --- a/tests/runnable/test_datastore.py +++ b/tests/runnable/test_datastore.py @@ -109,7 +109,9 @@ def test_runlog_search_branch_by_internal_name_returns_run_log_if_internal_name_ assert step is None -def test_step_log_get_data_catalogs_by_stage_gets_catalogs_from_branches(mocker, monkeypatch): +def test_step_log_get_data_catalogs_by_stage_gets_catalogs_from_branches( + mocker, monkeypatch +): mock_branch_log = mocker.MagicMock() mock_branch_log.get_data_catalogs_by_stage.return_value = ["from_branch"] @@ -120,7 +122,9 @@ def test_step_log_get_data_catalogs_by_stage_gets_catalogs_from_branches(mocker, assert ["from_branch"] == step_log.get_data_catalogs_by_stage() -def test_step_log_get_data_catalogs_by_stage_adds_catalogs_from_branches_to_current_ones(mocker, monkeypatch): +def test_step_log_get_data_catalogs_by_stage_adds_catalogs_from_branches_to_current_ones( + mocker, monkeypatch +): mock_branch_log = mocker.MagicMock() mock_branch_log.get_data_catalogs_by_stage.return_value = ["from_branch"] @@ -135,7 +139,9 @@ def test_step_log_get_data_catalogs_by_stage_adds_catalogs_from_branches_to_curr assert [mock_data_catalog, "from_branch"] == step_log.get_data_catalogs_by_stage() -def test_run_log_get_data_catalogs_by_stage_gets_catalogs_from_steps(mocker, monkeypatch): +def test_run_log_get_data_catalogs_by_stage_gets_catalogs_from_steps( + mocker, monkeypatch +): mock_step = mocker.MagicMock() mock_step.get_data_catalogs_by_stage.return_value = ["data catalog"] @@ -183,7 +189,9 @@ def test_base_run_log_store_update_run_log_status(mocker, monkeypatch): mock_get_run_log_by_id = mocker.MagicMock(return_value=run_log) mock_put_run_log = mocker.MagicMock() - monkeypatch.setattr(datastore.BaseRunLogStore, "get_run_log_by_id", mock_get_run_log_by_id) + monkeypatch.setattr( + datastore.BaseRunLogStore, "get_run_log_by_id", mock_get_run_log_by_id + ) monkeypatch.setattr(datastore.BaseRunLogStore, "put_run_log", mock_put_run_log) run_log_store = datastore.BaseRunLogStore() @@ -191,13 +199,17 @@ def test_base_run_log_store_update_run_log_status(mocker, monkeypatch): assert run_log.status == "running" -def test_base_run_log_set_parameters_creates_parameters_if_not_present_previously(mocker, monkeypatch): +def test_base_run_log_set_parameters_creates_parameters_if_not_present_previously( + mocker, monkeypatch +): run_log = datastore.RunLog(run_id="testing") mock_get_run_log_by_id = mocker.MagicMock(return_value=run_log) mock_put_run_log = mocker.MagicMock() - monkeypatch.setattr(datastore.BaseRunLogStore, "get_run_log_by_id", mock_get_run_log_by_id) + monkeypatch.setattr( + datastore.BaseRunLogStore, "get_run_log_by_id", mock_get_run_log_by_id + ) monkeypatch.setattr(datastore.BaseRunLogStore, "put_run_log", mock_put_run_log) parameters = {"a": 1} @@ -208,13 +220,17 @@ def test_base_run_log_set_parameters_creates_parameters_if_not_present_previousl mock_put_run_log.assert_called_once_with(run_log=run_log) -def test_base_run_log_set_parameters_updates_parameters_if_present_previously(mocker, monkeypatch): +def test_base_run_log_set_parameters_updates_parameters_if_present_previously( + mocker, monkeypatch +): run_log = datastore.RunLog(run_id="testing") run_log.parameters = {"b": 2} mock_get_run_log_by_id = mocker.MagicMock(return_value=run_log) mock_put_run_log = mocker.MagicMock() - monkeypatch.setattr(datastore.BaseRunLogStore, "get_run_log_by_id", mock_get_run_log_by_id) + monkeypatch.setattr( + datastore.BaseRunLogStore, "get_run_log_by_id", mock_get_run_log_by_id + ) monkeypatch.setattr(datastore.BaseRunLogStore, "put_run_log", mock_put_run_log) parameters = {"a": 1} @@ -231,33 +247,43 @@ def test_base_run_log_store_get_parameters_gets_from_run_log(mocker, monkeypatch mock_get_run_log_by_id = mocker.MagicMock(return_value=run_log) - monkeypatch.setattr(datastore.BaseRunLogStore, "get_run_log_by_id", mock_get_run_log_by_id) + monkeypatch.setattr( + datastore.BaseRunLogStore, "get_run_log_by_id", mock_get_run_log_by_id + ) run_log_store = datastore.BaseRunLogStore() assert run_log_store.get_parameters(run_id="testing") == {"b": 2} -def test_base_run_log_store_get_run_config_returns_config_from_run_log(mocker, monkeypatch): +def test_base_run_log_store_get_run_config_returns_config_from_run_log( + mocker, monkeypatch +): run_log = datastore.RunLog(run_id="testing") run_config = {"executor": "for testing"} run_log.run_config = run_config mock_get_run_log_by_id = mocker.MagicMock(return_value=run_log) - monkeypatch.setattr(datastore.BaseRunLogStore, "get_run_log_by_id", mock_get_run_log_by_id) + monkeypatch.setattr( + datastore.BaseRunLogStore, "get_run_log_by_id", mock_get_run_log_by_id + ) run_log_store = datastore.BaseRunLogStore() assert run_config == run_log_store.get_run_config(run_id="testing") -def test_base_run_log_store_set_run_config_creates_run_log_if_not_present(mocker, monkeypatch): +def test_base_run_log_store_set_run_config_creates_run_log_if_not_present( + mocker, monkeypatch +): run_log = datastore.RunLog(run_id="testing") mock_get_run_log_by_id = mocker.MagicMock(return_value=run_log) mock_put_run_log = mocker.MagicMock() run_config = {"executor": "for testing"} - monkeypatch.setattr(datastore.BaseRunLogStore, "get_run_log_by_id", mock_get_run_log_by_id) + monkeypatch.setattr( + datastore.BaseRunLogStore, "get_run_log_by_id", mock_get_run_log_by_id + ) monkeypatch.setattr(datastore.BaseRunLogStore, "put_run_log", mock_put_run_log) run_log_store = datastore.BaseRunLogStore() @@ -267,14 +293,20 @@ def test_base_run_log_store_set_run_config_creates_run_log_if_not_present(mocker mock_put_run_log.assert_called_once_with(run_log=run_log) -def test_base_run_log_store_set_run_config_updates_run_log_if_present(mocker, monkeypatch): - run_log = datastore.RunLog(run_id="testing", run_config={"datastore": "for testing"}) +def test_base_run_log_store_set_run_config_updates_run_log_if_present( + mocker, monkeypatch +): + run_log = datastore.RunLog( + run_id="testing", run_config={"datastore": "for testing"} + ) mock_get_run_log_by_id = mocker.MagicMock(return_value=run_log) mock_put_run_log = mocker.MagicMock() run_config = {"executor": "for testing"} - monkeypatch.setattr(datastore.BaseRunLogStore, "get_run_log_by_id", mock_get_run_log_by_id) + monkeypatch.setattr( + datastore.BaseRunLogStore, "get_run_log_by_id", mock_get_run_log_by_id + ) monkeypatch.setattr(datastore.BaseRunLogStore, "put_run_log", mock_put_run_log) run_log_store = datastore.BaseRunLogStore() @@ -291,11 +323,19 @@ def test_base_run_log_store_create_step_log_returns_a_step_log_object(): assert isinstance(step_log, datastore.StepLog) -def test_base_run_log_store_get_step_log_raises_step_log_not_found_error_if_search_fails(monkeypatch, mocker): +def test_base_run_log_store_get_step_log_raises_step_log_not_found_error_if_search_fails( + monkeypatch, mocker +): mock_run_log = mocker.MagicMock() - mock_run_log.search_step_by_internal_name.side_effect = exceptions.StepLogNotFoundError("test", "test") - - monkeypatch.setattr(datastore.BaseRunLogStore, "get_run_log_by_id", mocker.MagicMock(return_value=mock_run_log)) + mock_run_log.search_step_by_internal_name.side_effect = ( + exceptions.StepLogNotFoundError("test", "test") + ) + + monkeypatch.setattr( + datastore.BaseRunLogStore, + "get_run_log_by_id", + mocker.MagicMock(return_value=mock_run_log), + ) run_log_store = datastore.BaseRunLogStore() with pytest.raises(exceptions.StepLogNotFoundError): @@ -307,10 +347,16 @@ def test_base_run_log_store_get_step_log_returns_from_log_search(monkeypatch, mo mock_step_log = mocker.MagicMock() mock_run_log.search_step_by_internal_name.return_value = mock_step_log, None - monkeypatch.setattr(datastore.BaseRunLogStore, "get_run_log_by_id", mocker.MagicMock(return_value=mock_run_log)) + monkeypatch.setattr( + datastore.BaseRunLogStore, + "get_run_log_by_id", + mocker.MagicMock(return_value=mock_run_log), + ) run_log_store = datastore.BaseRunLogStore() - assert mock_step_log == run_log_store.get_step_log(internal_name="test", run_id="test") + assert mock_step_log == run_log_store.get_step_log( + internal_name="test", run_id="test" + ) def test_base_run_log_store_create_branch_log_returns_a_branch_log_object(): @@ -337,14 +383,22 @@ def test_base_run_log_store_create_data_catalog_object(): assert isinstance(data_catalog, datastore.DataCatalog) -def test_base_run_log_store_add_step_log_adds_log_to_run_log_if_branch_is_none(mocker, monkeypatch): - step_log = datastore.StepLog(name="test", internal_name="test") #  step_log at root level +def test_base_run_log_store_add_step_log_adds_log_to_run_log_if_branch_is_none( + mocker, monkeypatch +): + step_log = datastore.StepLog( + name="test", internal_name="test" + ) #  step_log at root level mock_run_log = mocker.MagicMock() mock_run_log.search_branch_by_internal_name.return_value = None, None mock_run_log.steps = {} - monkeypatch.setattr(datastore.BaseRunLogStore, "get_run_log_by_id", mocker.MagicMock(return_value=mock_run_log)) + monkeypatch.setattr( + datastore.BaseRunLogStore, + "get_run_log_by_id", + mocker.MagicMock(return_value=mock_run_log), + ) monkeypatch.setattr(datastore.BaseRunLogStore, "put_run_log", mocker.MagicMock()) run_log_store = datastore.BaseRunLogStore() @@ -353,15 +407,23 @@ def test_base_run_log_store_add_step_log_adds_log_to_run_log_if_branch_is_none(m assert mock_run_log.steps["test"] == step_log -def test_base_run_log_store_add_step_log_adds_log_to_branch_log_if_branch_is_found(mocker, monkeypatch): - step_log = datastore.StepLog(name="test", internal_name="test.branch.step") #  step_log at branch level +def test_base_run_log_store_add_step_log_adds_log_to_branch_log_if_branch_is_found( + mocker, monkeypatch +): + step_log = datastore.StepLog( + name="test", internal_name="test.branch.step" + ) #  step_log at branch level mock_run_log = mocker.MagicMock() mock_branch_log = mocker.MagicMock() mock_run_log.search_branch_by_internal_name.return_value = mock_branch_log, None mock_branch_log.steps = {} - monkeypatch.setattr(datastore.BaseRunLogStore, "get_run_log_by_id", mocker.MagicMock(return_value=mock_run_log)) + monkeypatch.setattr( + datastore.BaseRunLogStore, + "get_run_log_by_id", + mocker.MagicMock(return_value=mock_run_log), + ) monkeypatch.setattr(datastore.BaseRunLogStore, "put_run_log", mocker.MagicMock()) run_log_store = datastore.BaseRunLogStore() @@ -370,25 +432,41 @@ def test_base_run_log_store_add_step_log_adds_log_to_branch_log_if_branch_is_fou assert mock_branch_log.steps["test.branch.step"] == step_log -def test_base_run_log_store_get_branch_log_returns_run_log_if_internal_branch_name_is_none(mocker, monkeypatch): +def test_base_run_log_store_get_branch_log_returns_run_log_if_internal_branch_name_is_none( + mocker, monkeypatch +): mock_run_log = mocker.MagicMock() - monkeypatch.setattr(datastore.BaseRunLogStore, "get_run_log_by_id", mocker.MagicMock(return_value=mock_run_log)) + monkeypatch.setattr( + datastore.BaseRunLogStore, + "get_run_log_by_id", + mocker.MagicMock(return_value=mock_run_log), + ) run_log_store = datastore.BaseRunLogStore() - assert mock_run_log == run_log_store.get_branch_log(internal_branch_name=None, run_id="test") + assert mock_run_log == run_log_store.get_branch_log( + internal_branch_name=None, run_id="test" + ) -def test_base_run_log_store_get_branch_log_returns_branch_log_if_internal_branch_name_is_given(mocker, monkeypatch): +def test_base_run_log_store_get_branch_log_returns_branch_log_if_internal_branch_name_is_given( + mocker, monkeypatch +): mock_run_log = mocker.MagicMock() mock_branch_log = mocker.MagicMock() mock_run_log.search_branch_by_internal_name.return_value = mock_branch_log, None - monkeypatch.setattr(datastore.BaseRunLogStore, "get_run_log_by_id", mocker.MagicMock(return_value=mock_run_log)) + monkeypatch.setattr( + datastore.BaseRunLogStore, + "get_run_log_by_id", + mocker.MagicMock(return_value=mock_run_log), + ) run_log_store = datastore.BaseRunLogStore() - assert mock_branch_log == run_log_store.get_branch_log(internal_branch_name="branch", run_id="test") + assert mock_branch_log == run_log_store.get_branch_log( + internal_branch_name="branch", run_id="test" + ) def test_base_run_log_store_add_branch_log_adds_run_log_if_sent(monkeypatch, mocker): @@ -413,7 +491,11 @@ def test_base_run_log_add_branch_log_adds_branch_to_the_right_step(mocker, monke mock_put_run_log = mocker.MagicMock() monkeypatch.setattr(datastore.BaseRunLogStore, "put_run_log", mock_put_run_log) - monkeypatch.setattr(datastore.BaseRunLogStore, "get_run_log_by_id", mocker.MagicMock(return_value=mock_run_log)) + monkeypatch.setattr( + datastore.BaseRunLogStore, + "get_run_log_by_id", + mocker.MagicMock(return_value=mock_run_log), + ) mock_run_log.search_step_by_internal_name.return_value = mock_step, None diff --git a/tests/runnable/test_graph.py b/tests/runnable/test_graph.py index f2836bc5..5b13f27c 100644 --- a/tests/runnable/test_graph.py +++ b/tests/runnable/test_graph.py @@ -1,11 +1,10 @@ import pytest +from extensions.nodes.nodes import FailNode, StubNode, SuccessNode from runnable import ( - defaults, # pylint: disable=import-error exceptions, # pylint: disable=import-error graph, # pylint: disable=import-error ) -from runnable.extensions.nodes import StubNode, FailNode, SuccessNode def get_new_graph(start_at="this", internal_branch_name="i_name"): @@ -94,7 +93,9 @@ def test_get_fail_node_returns_success_node_if_present(new_graph): def test_is_start_node_present_returns_false_if_node_absent(monkeypatch, mocker): monkeypatch.setattr( - graph.Graph, "get_node_by_name", mocker.MagicMock(side_effect=exceptions.NodeNotFoundError("a")) + graph.Graph, + "get_node_by_name", + mocker.MagicMock(side_effect=exceptions.NodeNotFoundError("a")), ) new_graph = get_new_graph(start_at="a") assert new_graph.is_start_node_present() is False @@ -142,11 +143,19 @@ def test_fail_node_validation_returns_true_if_eq_1(new_graph): def test_check_graph_does_not_raise_exception_if_all_pass(monkeypatch, mocker): try: - monkeypatch.setattr(graph.Graph, "missing_neighbors", mocker.MagicMock(return_value=[])) + monkeypatch.setattr( + graph.Graph, "missing_neighbors", mocker.MagicMock(return_value=[]) + ) monkeypatch.setattr(graph.Graph, "is_dag", mocker.MagicMock(return_value=True)) - monkeypatch.setattr(graph.Graph, "is_start_node_present", mocker.MagicMock(return_value=True)) - monkeypatch.setattr(graph.Graph, "success_node_validation", mocker.MagicMock(return_value=True)) - monkeypatch.setattr(graph.Graph, "fail_node_validation", mocker.MagicMock(return_value=True)) + monkeypatch.setattr( + graph.Graph, "is_start_node_present", mocker.MagicMock(return_value=True) + ) + monkeypatch.setattr( + graph.Graph, "success_node_validation", mocker.MagicMock(return_value=True) + ) + monkeypatch.setattr( + graph.Graph, "fail_node_validation", mocker.MagicMock(return_value=True) + ) new_graph = get_new_graph() new_graph.check_graph() except BaseException: @@ -155,55 +164,97 @@ def test_check_graph_does_not_raise_exception_if_all_pass(monkeypatch, mocker): def test_validate_raises_exception_if_is_dag_fails(mocker, monkeypatch): with pytest.raises(Exception): - monkeypatch.setattr(graph.Graph, "missing_neighbors", mocker.MagicMock(return_value=[])) + monkeypatch.setattr( + graph.Graph, "missing_neighbors", mocker.MagicMock(return_value=[]) + ) monkeypatch.setattr(graph.Graph, "is_dag", mocker.MagicMock(return_value=False)) - monkeypatch.setattr(graph.Graph, "is_start_node_present", mocker.MagicMock(return_value=True)) - monkeypatch.setattr(graph.Graph, "success_node_validation", mocker.MagicMock(return_value=True)) - monkeypatch.setattr(graph.Graph, "fail_node_validation", mocker.MagicMock(return_value=True)) + monkeypatch.setattr( + graph.Graph, "is_start_node_present", mocker.MagicMock(return_value=True) + ) + monkeypatch.setattr( + graph.Graph, "success_node_validation", mocker.MagicMock(return_value=True) + ) + monkeypatch.setattr( + graph.Graph, "fail_node_validation", mocker.MagicMock(return_value=True) + ) new_graph = get_new_graph() new_graph.check_graph() def test_validate_raises_exception_if_is_start_node_present_fails(mocker, monkeypatch): with pytest.raises(Exception): - monkeypatch.setattr(graph.Graph, "missing_neighbors", mocker.MagicMock(return_value=[])) + monkeypatch.setattr( + graph.Graph, "missing_neighbors", mocker.MagicMock(return_value=[]) + ) monkeypatch.setattr(graph.Graph, "is_dag", mocker.MagicMock(return_value=True)) - monkeypatch.setattr(graph.Graph, "is_start_node_present", mocker.MagicMock(return_value=False)) - monkeypatch.setattr(graph.Graph, "success_node_validation", mocker.MagicMock(return_value=True)) - monkeypatch.setattr(graph.Graph, "fail_node_validation", mocker.MagicMock(return_value=True)) + monkeypatch.setattr( + graph.Graph, "is_start_node_present", mocker.MagicMock(return_value=False) + ) + monkeypatch.setattr( + graph.Graph, "success_node_validation", mocker.MagicMock(return_value=True) + ) + monkeypatch.setattr( + graph.Graph, "fail_node_validation", mocker.MagicMock(return_value=True) + ) new_graph = get_new_graph() new_graph.check_graph() -def test_validate_raises_exception_if_success_node_validation_fails(mocker, monkeypatch): +def test_validate_raises_exception_if_success_node_validation_fails( + mocker, monkeypatch +): with pytest.raises(Exception): - monkeypatch.setattr(graph.Graph, "missing_neighbors", mocker.MagicMock(return_value=[])) + monkeypatch.setattr( + graph.Graph, "missing_neighbors", mocker.MagicMock(return_value=[]) + ) monkeypatch.setattr(graph.Graph, "is_dag", mocker.MagicMock(return_value=True)) - monkeypatch.setattr(graph.Graph, "is_start_node_present", mocker.MagicMock(return_value=True)) - monkeypatch.setattr(graph.Graph, "success_node_validation", mocker.MagicMock(return_value=False)) - monkeypatch.setattr(graph.Graph, "fail_node_validation", mocker.MagicMock(return_value=True)) + monkeypatch.setattr( + graph.Graph, "is_start_node_present", mocker.MagicMock(return_value=True) + ) + monkeypatch.setattr( + graph.Graph, "success_node_validation", mocker.MagicMock(return_value=False) + ) + monkeypatch.setattr( + graph.Graph, "fail_node_validation", mocker.MagicMock(return_value=True) + ) new_graph = get_new_graph() new_graph.check_graph() def test_validate_raises_exception_if_fail_node_validation_fails(mocker, monkeypatch): with pytest.raises(Exception): - monkeypatch.setattr(graph.Graph, "missing_neighbors", mocker.MagicMock(return_value=[])) + monkeypatch.setattr( + graph.Graph, "missing_neighbors", mocker.MagicMock(return_value=[]) + ) monkeypatch.setattr(graph.Graph, "is_dag", mocker.MagicMock(return_value=True)) - monkeypatch.setattr(graph.Graph, "is_start_node_present", mocker.MagicMock(return_value=True)) - monkeypatch.setattr(graph.Graph, "success_node_validation", mocker.MagicMock(return_value=True)) - monkeypatch.setattr(graph.Graph, "fail_node_validation", mocker.MagicMock(return_value=False)) + monkeypatch.setattr( + graph.Graph, "is_start_node_present", mocker.MagicMock(return_value=True) + ) + monkeypatch.setattr( + graph.Graph, "success_node_validation", mocker.MagicMock(return_value=True) + ) + monkeypatch.setattr( + graph.Graph, "fail_node_validation", mocker.MagicMock(return_value=False) + ) new_graph = get_new_graph() new_graph.check_graph() def test_validate_raises_exception_if_missing_neighbors(mocker, monkeypatch): with pytest.raises(Exception): - monkeypatch.setattr(graph.Graph, "missing_neighbors", mocker.MagicMock(return_value=["missing"])) + monkeypatch.setattr( + graph.Graph, "missing_neighbors", mocker.MagicMock(return_value=["missing"]) + ) monkeypatch.setattr(graph.Graph, "is_dag", mocker.MagicMock(return_value=True)) - monkeypatch.setattr(graph.Graph, "is_start_node_present", mocker.MagicMock(return_value=True)) - monkeypatch.setattr(graph.Graph, "success_node_validation", mocker.MagicMock(return_value=True)) - monkeypatch.setattr(graph.Graph, "fail_node_validation", mocker.MagicMock(return_value=True)) + monkeypatch.setattr( + graph.Graph, "is_start_node_present", mocker.MagicMock(return_value=True) + ) + monkeypatch.setattr( + graph.Graph, "success_node_validation", mocker.MagicMock(return_value=True) + ) + monkeypatch.setattr( + graph.Graph, "fail_node_validation", mocker.MagicMock(return_value=True) + ) new_graph = get_new_graph() new_graph.check_graph() @@ -229,14 +280,20 @@ def test_is_dag_returns_true_when_acyclic(mocked_graph): assert test_graph.is_dag() -def test_is_dag_returns_true_when_on_failure_points_to_non_terminal_node_and_later_node(mocked_graph): +def test_is_dag_returns_true_when_on_failure_points_to_non_terminal_node_and_later_node( + mocked_graph, +): test_graph = mocked_graph start_node_config = {"next_node": "middle", "on_failure": ""} - start_node = StubNode(name="start", internal_name="start", next_node="middle", on_failure="") + start_node = StubNode( + name="start", internal_name="start", next_node="middle", on_failure="" + ) middle_node_config = {"next_node": "success", "on_failure": "fail"} - middle_node = StubNode(name="middle", internal_name="middle", next_node="success", on_failure="fail") + middle_node = StubNode( + name="middle", internal_name="middle", next_node="success", on_failure="fail" + ) success_node = SuccessNode(name="success", internal_name="success") @@ -253,7 +310,9 @@ def test_is_dag_returns_false_when_cyclic_in_next_nodes(mocked_graph): test_graph = mocked_graph start_node_config = {"next_node": "b", "on_failure": "fail"} - start_node = StubNode(name="start", internal_name="start", next_node="b", on_failure="fail") + start_node = StubNode( + name="start", internal_name="start", next_node="b", on_failure="fail" + ) bnode = StubNode(name="b", internal_name="b", next_node="c", on_failure="fail") @@ -274,7 +333,9 @@ def test_is_dag_returns_false_when_cyclic_in_next_nodes(mocked_graph): def test_is_dag_returns_false_when_fail_points_to_previous_node(mocked_graph): test_graph = mocked_graph - start_node = StubNode(name="start", internal_name="start", next_node="b", on_failure="fail") + start_node = StubNode( + name="start", internal_name="start", next_node="b", on_failure="fail" + ) bnode = StubNode(name="b", internal_name="b", next_node="c", on_failure="fail") cnode = StubNode(name="c", internal_name="c", next_node="c", on_failure="fail") @@ -291,9 +352,13 @@ def test_is_dag_returns_false_when_fail_points_to_previous_node(mocked_graph): def test_missing_neighbors_empty_list_no_neigbors_missing(mocked_graph): test_graph = mocked_graph - start_node = StubNode(name="start", internal_name="start", next_node="middle", on_failure="fail") + start_node = StubNode( + name="start", internal_name="start", next_node="middle", on_failure="fail" + ) - middle_node = StubNode(name="middle", internal_name="middle", next_node="success", on_failure="fail") + middle_node = StubNode( + name="middle", internal_name="middle", next_node="success", on_failure="fail" + ) success_node = SuccessNode(name="success", internal_name="success") @@ -312,10 +377,14 @@ def test_missing_neighbors_list_of_missing_neighbor_one_missing_next(mocked_grap test_graph = mocked_graph start_config = {"next_node": "middle", "on_failure": "fail"} - start_node = StubNode(name="start", internal_name="start", next_node="middle", on_failure="fail") + start_node = StubNode( + name="start", internal_name="start", next_node="middle", on_failure="fail" + ) middle_config = {"next_node": "success", "on_failure": "fail"} - middle_node = StubNode(name="middle", internal_name="middle", next_node="success", on_failure="fail") + middle_node = StubNode( + name="middle", internal_name="middle", next_node="success", on_failure="fail" + ) fail_node = FailNode(name="fail", internal_name="fail") @@ -332,9 +401,13 @@ def test_missing_neighbors_list_of_missing_neighbor_one_missing_next(mocked_grap def test_missing_list_of_missing_neighbor_one_missing_on_failure(mocked_graph): test_graph = mocked_graph - start_node = StubNode(name="start", internal_name="start", next_node="middle", on_failure="fail") + start_node = StubNode( + name="start", internal_name="start", next_node="middle", on_failure="fail" + ) - middle_node = StubNode(name="middle", internal_name="middle", next_node="success", on_failure="fail") + middle_node = StubNode( + name="middle", internal_name="middle", next_node="success", on_failure="fail" + ) success_node = SuccessNode(name="success", internal_name="success") @@ -352,9 +425,13 @@ def test_missing_list_of_missing_neighbor_one_missing_on_failure(mocked_graph): def test_missing_list_of_missing_neighbor_two_missing(mocked_graph): test_graph = mocked_graph - start_node = StubNode(name="start", internal_name="start", next_node="middle", on_failure="fail") + start_node = StubNode( + name="start", internal_name="start", next_node="middle", on_failure="fail" + ) - StubNode(name="middle", internal_name="middle", next_node="success", on_failure="fail") + StubNode( + name="middle", internal_name="middle", next_node="success", on_failure="fail" + ) success_node = SuccessNode(name="success", internal_name="success") diff --git a/tests/runnable/test_integration.py b/tests/runnable/test_integration.py index ccf4ce42..e6763274 100644 --- a/tests/runnable/test_integration.py +++ b/tests/runnable/test_integration.py @@ -28,40 +28,56 @@ def test_validate_calls_validate_of_integration_handler(monkeypatch, mocker): mock_integration_handler.return_value.validate = mock_validate - monkeypatch.setattr(integration, "get_integration_handler", lambda x, y: mock_integration_handler()) + monkeypatch.setattr( + integration, "get_integration_handler", lambda x, y: mock_integration_handler() + ) integration.validate(None, None) assert mock_validate.call_count == 1 -def test_configure_for_traversal_calls_validate_of_integration_handler(monkeypatch, mocker): +def test_configure_for_traversal_calls_validate_of_integration_handler( + monkeypatch, mocker +): mock_configure_for_traversal = mocker.MagicMock() mock_integration_handler = mocker.MagicMock() - mock_integration_handler.return_value.configure_for_traversal = mock_configure_for_traversal + mock_integration_handler.return_value.configure_for_traversal = ( + mock_configure_for_traversal + ) - monkeypatch.setattr(integration, "get_integration_handler", lambda x, y: mock_integration_handler()) + monkeypatch.setattr( + integration, "get_integration_handler", lambda x, y: mock_integration_handler() + ) integration.configure_for_traversal(None, None) assert mock_configure_for_traversal.call_count == 1 -def test_configure_for_execution_calls_validate_of_integration_handler(monkeypatch, mocker): +def test_configure_for_execution_calls_validate_of_integration_handler( + monkeypatch, mocker +): mock_configure_for_execution = mocker.MagicMock() mock_integration_handler = mocker.MagicMock() - mock_integration_handler.return_value.configure_for_execution = mock_configure_for_execution + mock_integration_handler.return_value.configure_for_execution = ( + mock_configure_for_execution + ) - monkeypatch.setattr(integration, "get_integration_handler", lambda x, y: mock_integration_handler()) + monkeypatch.setattr( + integration, "get_integration_handler", lambda x, y: mock_integration_handler() + ) integration.configure_for_execution(None, None) assert mock_configure_for_execution.call_count == 1 -def test_get_integration_handler_gives_default_integration_if_no_match(monkeypatch, mocker): +def test_get_integration_handler_gives_default_integration_if_no_match( + monkeypatch, mocker +): mock_service = mocker.MagicMock() mock_service.service_type = "I do not exist" mock_service.service_name = "DummyService" @@ -90,7 +106,10 @@ def test_do_nothing_catalog_validate_emits_warning(caplog): with caplog.at_level(logging.INFO, logger="runnable"): extension.validate() - assert "A do-nothing catalog does not hold any data and therefore cannot pass data between nodes." in caplog.text + assert ( + "A do-nothing catalog does not hold any data and therefore cannot pass data between nodes." + in caplog.text + ) def test_do_nothing_secrets_validate_emits_warning(caplog): @@ -99,17 +118,24 @@ def test_do_nothing_secrets_validate_emits_warning(caplog): with caplog.at_level(logging.INFO, logger="runnable"): extension.validate() - assert "A do-nothing secrets does not hold any secrets and therefore cannot return you any secrets." in caplog.text + assert ( + "A do-nothing secrets does not hold any secrets and therefore cannot return you any secrets." + in caplog.text + ) -def test_buffered_run_log_store_raises_exception_for_anything_else_than_local(mocker, monkeypatch): +def test_buffered_run_log_store_raises_exception_for_anything_else_than_local( + mocker, monkeypatch +): mock_executor = mocker.MagicMock() mock_executor.service_name = "not_local" extension = integration.BufferedRunLogStore(mock_executor, "service") # expect an exception - with pytest.raises(Exception, match="Buffered run log store is only supported for local executor"): + with pytest.raises( + Exception, match="Buffered run log store is only supported for local executor" + ): extension.validate() @@ -122,4 +148,6 @@ def test_buffered_run_log_store_accepts_local(mocker, caplog): with caplog.at_level(logging.INFO, logger="runnable"): extension.validate() - assert "Run log generated by buffered run log store are not persisted." in caplog.text + assert ( + "Run log generated by buffered run log store are not persisted." in caplog.text + ) diff --git a/tests/runnable/test_nodes.py b/tests/runnable/test_nodes.py index 1a1f94fa..b17fbe0b 100644 --- a/tests/runnable/test_nodes.py +++ b/tests/runnable/test_nodes.py @@ -33,12 +33,17 @@ def instantiable_terminal_node(monkeypatch): yield -def test_base_run_log_store_context_property(mocker, monkeypatch, instantiable_base_class): +def test_base_run_log_store_context_property( + mocker, monkeypatch, instantiable_base_class +): mock_run_context = mocker.Mock() monkeypatch.setattr(nodes.context, "run_context", mock_run_context) - assert nodes.BaseNode(node_type="dummy", name="test", internal_name="")._context == mock_run_context + assert ( + nodes.BaseNode(node_type="dummy", name="test", internal_name="")._context + == mock_run_context + ) def test_validate_name_for_dot(instantiable_base_class): @@ -73,7 +78,9 @@ def test_base_node__get_step_log_name_returns_internal_name_if_no_map_variable() def test_base_node__get_step_log_name_returns_map_modified_internal_name_if_map_variable(): - node = nodes.BaseNode(name="test", internal_name="test." + defaults.MAP_PLACEHOLDER, node_type="dummy") + node = nodes.BaseNode( + name="test", internal_name="test." + defaults.MAP_PLACEHOLDER, node_type="dummy" + ) assert node._get_step_log_name(map_variable={"map_key": "a"}) == "test.a" @@ -81,11 +88,17 @@ def test_base_node__get_step_log_name_returns_map_modified_internal_name_if_map_ def test_base_node__get_step_log_name_returns_map_modified_internal_name_if_map_variable_multiple(): node = nodes.BaseNode( name="test", - internal_name="test." + defaults.MAP_PLACEHOLDER + ".step." + defaults.MAP_PLACEHOLDER, + internal_name="test." + + defaults.MAP_PLACEHOLDER + + ".step." + + defaults.MAP_PLACEHOLDER, node_type="dummy", ) - assert node._get_step_log_name(map_variable={"map_key": "a", "map_key1": "b"}) == "test.a.step.b" + assert ( + node._get_step_log_name(map_variable={"map_key": "a", "map_key1": "b"}) + == "test.a.step.b" + ) def test_base_node__get_branch_log_name_returns_null_if_not_set(): @@ -95,14 +108,22 @@ def test_base_node__get_branch_log_name_returns_null_if_not_set(): def test_base_node__get_branch_log_name_returns_internal_name_if_set(): - node = nodes.BaseNode(name="test", internal_name="test", internal_branch_name="test_internal", node_type="dummy") + node = nodes.BaseNode( + name="test", + internal_name="test", + internal_branch_name="test_internal", + node_type="dummy", + ) assert node._get_branch_log_name() == "test_internal" def test_base_node__get_branch_log_name_returns_map_modified_internal_name_if_map_variable(): node = nodes.BaseNode( - name="test", internal_name="test_", internal_branch_name="test." + defaults.MAP_PLACEHOLDER, node_type="dummy" + name="test", + internal_name="test_", + internal_branch_name="test." + defaults.MAP_PLACEHOLDER, + node_type="dummy", ) assert node._get_branch_log_name(map_variable={"map_key": "a"}) == "test.a" @@ -112,16 +133,28 @@ def test_base_node__get_branch_log_name_returns_map_modified_internal_name_if_ma node = nodes.BaseNode( name="test", internal_name="test_", - internal_branch_name="test." + defaults.MAP_PLACEHOLDER + ".step." + defaults.MAP_PLACEHOLDER, + internal_branch_name="test." + + defaults.MAP_PLACEHOLDER + + ".step." + + defaults.MAP_PLACEHOLDER, node_type="dummy", ) - assert node._get_branch_log_name(map_variable={"map_key": "a", "map_key1": "b"}) == "test.a.step.b" + assert ( + node._get_branch_log_name(map_variable={"map_key": "a", "map_key1": "b"}) + == "test.a.step.b" + ) -def test_traversal_node_get_on_failure_node_returns_from_config(instantiable_traversal_node): +def test_traversal_node_get_on_failure_node_returns_from_config( + instantiable_traversal_node, +): traversal_class = nodes.TraversalNode( - name="test", internal_name="test", node_type="test", next_node="next", on_failure="on_failure" + name="test", + internal_name="test", + node_type="test", + next_node="next", + on_failure="on_failure", ) assert traversal_class._get_on_failure_node() == "on_failure" @@ -129,7 +162,11 @@ def test_traversal_node_get_on_failure_node_returns_from_config(instantiable_tra def test_traversal_node_get_next_node_returns_from_config(instantiable_traversal_node): traversal_class = nodes.TraversalNode( - name="test", internal_name="test", node_type="test", next_node="next", on_failure="on_failure" + name="test", + internal_name="test", + node_type="test", + next_node="next", + on_failure="on_failure", ) assert traversal_class._get_next_node() == "next" @@ -137,21 +174,33 @@ def test_traversal_node_get_next_node_returns_from_config(instantiable_traversal def test_traversal_node_is_terminal_node_is_false(instantiable_traversal_node): traversal_class = nodes.TraversalNode( - name="test", internal_name="test", node_type="test", next_node="next", on_failure="on_failure" + name="test", + internal_name="test", + node_type="test", + next_node="next", + on_failure="on_failure", ) assert traversal_class._is_terminal_node() is False -def test_traversal_node_get_executor_config_defaults_to_empty_dict(instantiable_traversal_node): +def test_traversal_node_get_executor_config_defaults_to_empty_dict( + instantiable_traversal_node, +): traversal_class = nodes.TraversalNode( - name="test", internal_name="test", node_type="test", next_node="next", on_failure="on_failure" + name="test", + internal_name="test", + node_type="test", + next_node="next", + on_failure="on_failure", ) assert traversal_class._get_executor_config("I do not exist") == "" -def test_traversal_node_get_executor_returns_configured_config(instantiable_traversal_node): +def test_traversal_node_get_executor_returns_configured_config( + instantiable_traversal_node, +): traversal_class = nodes.TraversalNode( name="test", internal_name="test", @@ -201,7 +250,9 @@ def test_executable_node_get_catalog_detaults_to_1(instantiable_executable_node) assert traversal_class._get_max_attempts() == 1 -def test_executable_node_get_branch_by_name_raises_exception(instantiable_executable_node): +def test_executable_node_get_branch_by_name_raises_exception( + instantiable_executable_node, +): traversal_class = nodes.ExecutableNode( name="test", internal_name="test", @@ -213,7 +264,9 @@ def test_executable_node_get_branch_by_name_raises_exception(instantiable_execut traversal_class._get_branch_by_name("test") -def test_executable_node_execute_as_graph_raises_exception(instantiable_executable_node): +def test_executable_node_execute_as_graph_raises_exception( + instantiable_executable_node, +): traversal_class = nodes.ExecutableNode( name="test", internal_name="test", @@ -249,7 +302,9 @@ def test_executable_node_fan_out_raises_exception(instantiable_executable_node): traversal_class.fan_out() -def test_composite_node_get_catalog_settings_raises_exception(instantiable_composite_node): +def test_composite_node_get_catalog_settings_raises_exception( + instantiable_composite_node, +): traversal_class = nodes.CompositeNode( name="test", internal_name="test", @@ -298,7 +353,9 @@ def test_terminal_node__get_next_node_raises_exception(instantiable_terminal_nod node._get_next_node() -def test_terminal_node__get_catalog_settings_raises_exception(instantiable_terminal_node): +def test_terminal_node__get_catalog_settings_raises_exception( + instantiable_terminal_node, +): node = nodes.TerminalNode(name="test", internal_name="test", node_type="dummy") with pytest.raises(exceptions.TerminalNodeError): @@ -312,7 +369,9 @@ def test_terminal_node__get_branch_by_name_raises_exception(instantiable_termina node._get_branch_by_name("does not matter") -def test_terminal_node__get_executor_config_raises_exception(instantiable_terminal_node): +def test_terminal_node__get_executor_config_raises_exception( + instantiable_terminal_node, +): node = nodes.TerminalNode(name="test", internal_name="test", node_type="dummy") with pytest.raises(exceptions.TerminalNodeError): @@ -352,7 +411,9 @@ def test_terminal_node_is_terminal_node_returns_true(instantiable_terminal_node) assert node._is_terminal_node() -def test_terminal_node_parse_from_config_sends_the_config_for_instantiation(instantiable_terminal_node): +def test_terminal_node_parse_from_config_sends_the_config_for_instantiation( + instantiable_terminal_node, +): config = { "node_type": "dummy", "name": "test", diff --git a/tests/runnable/test_parmeters.py b/tests/runnable/test_parmeters.py index ff4ee424..a052cbc3 100644 --- a/tests/runnable/test_parmeters.py +++ b/tests/runnable/test_parmeters.py @@ -20,7 +20,9 @@ def test_get_user_set_parameters_does_nothing_if_prefix_does_not_match(monkeypat assert get_user_set_parameters() == {} -def test_get_user_set_parameters_removes_the_parameter_if_prefix_match_remove(monkeypatch): +def test_get_user_set_parameters_removes_the_parameter_if_prefix_match_remove( + monkeypatch, +): monkeypatch.setenv(defaults.PARAMETER_PREFIX + "key", "1") assert defaults.PARAMETER_PREFIX + "key" in os.environ @@ -70,7 +72,10 @@ def test_filter_arguments_for_func_with_simple_arguments(): def func(a: int, b: str): pass - params = {"a": JsonParameter(kind="json", value=1), "b": JsonParameter(kind="json", value="test")} + params = { + "a": JsonParameter(kind="json", value=1), + "b": JsonParameter(kind="json", value="test"), + } bound_args = filter_arguments_for_func(func, params) assert bound_args == {"a": 1, "b": "test"} @@ -108,7 +113,9 @@ def func(inner: int, c: str): pass params = {"inner": JsonParameter(kind="json", value=1)} - with pytest.raises(ValueError, match=r"Parameter c is required for func but not provided"): + with pytest.raises( + ValueError, match=r"Parameter c is required for func but not provided" + ): _ = filter_arguments_for_func(func, params) @@ -118,5 +125,7 @@ def test_filter_arguments_for_func_with_map_variable_sent_in(): def func(inner: int, first: int, second: str): pass - bound_args = filter_arguments_for_func(func, params, map_variable={"first": 1, "second": "test"}) + bound_args = filter_arguments_for_func( + func, params, map_variable={"first": 1, "second": "test"} + ) assert bound_args == {"inner": 1, "first": 1, "second": "test"} diff --git a/tests/runnable/test_sdk.py b/tests/runnable/test_sdk.py index b174ba92..a46e6d21 100644 --- a/tests/runnable/test_sdk.py +++ b/tests/runnable/test_sdk.py @@ -1,14 +1,16 @@ import pytest +from extensions.nodes import nodes from runnable import sdk -from runnable.extensions import nodes def test_success_init(): test_success = sdk.Success() assert test_success.name == "success" - assert test_success.create_node() == nodes.SuccessNode(name="success", internal_name="success") + assert test_success.create_node() == nodes.SuccessNode( + name="success", internal_name="success" + ) def test_fail_init(): @@ -22,10 +24,14 @@ def test_stub_node_makes_next_success_if_terminate_with_success(): test_stub = sdk.Stub(name="stub", terminate_with_success=True) assert test_stub.name == "stub" - assert test_stub.create_node() == nodes.StubNode(name="stub", next_node="success", internal_name="stub") + assert test_stub.create_node() == nodes.StubNode( + name="stub", next_node="success", internal_name="stub" + ) def test_stub_node_takes_given_next_node(): test_stub = sdk.Stub(name="stub", next_node="test") - assert test_stub.create_node() == nodes.StubNode(name="stub", next_node="test", internal_name="stub") + assert test_stub.create_node() == nodes.StubNode( + name="stub", next_node="test", internal_name="stub" + ) diff --git a/tests/runnable/test_secrets.py b/tests/runnable/test_secrets.py index 983eb3a2..06cc6fbf 100644 --- a/tests/runnable/test_secrets.py +++ b/tests/runnable/test_secrets.py @@ -11,7 +11,9 @@ def instantiable_base_class(monkeypatch): yield -def test_base_secrets_context_refers_to_run_context(mocker, monkeypatch, instantiable_base_class): +def test_base_secrets_context_refers_to_run_context( + mocker, monkeypatch, instantiable_base_class +): mock_run_context = mocker.Mock() monkeypatch.setattr(secrets.context, "run_context", mock_run_context) diff --git a/tests/runnable/test_utils.py b/tests/runnable/test_utils.py index 1240ddb5..cc5e8bdd 100644 --- a/tests/runnable/test_utils.py +++ b/tests/runnable/test_utils.py @@ -58,7 +58,9 @@ def test_apply_variables_raises_exception_if_variables_is_not_dict(): def test_apply_variables_applies_variables(): apply_to = "${var}_${var1}" - transformed = utils.apply_variables(apply_to, variables={"var": "hello", "var1": "me"}) + transformed = utils.apply_variables( + apply_to, variables={"var": "hello", "var1": "me"} + ) assert transformed == "hello_me" @@ -253,23 +255,31 @@ def test_get_git_remote_returns_calls_value(mocker, monkeypatch): assert utils.get_git_remote() == "test" -def test_get_git_code_identity_returns_default_in_case_of_exception(mocker, monkeypatch): +def test_get_git_code_identity_returns_default_in_case_of_exception( + mocker, monkeypatch +): mock_get_current_code_commit = mocker.MagicMock(side_effect=Exception()) monkeypatch.setattr(utils, "get_current_code_commit", mock_get_current_code_commit) mock_code_identity = mocker.MagicMock() mock_run_context = mocker.MagicMock() - mock_run_context.run_log_store.create_code_identity.return_value = mock_code_identity + mock_run_context.run_log_store.create_code_identity.return_value = ( + mock_code_identity + ) monkeypatch.setattr(utils.context, "run_context", mock_run_context) assert utils.get_git_code_identity() == mock_code_identity -def test_get_git_code_identity_returns_entities_from_other_functions(monkeypatch, mocker): +def test_get_git_code_identity_returns_entities_from_other_functions( + monkeypatch, mocker +): mock_get_current_code_commit = mocker.MagicMock(return_value="code commit") - mock_is_git_clean = mocker.MagicMock(return_value=(False, "first file, second file")) + mock_is_git_clean = mocker.MagicMock( + return_value=(False, "first file, second file") + ) mock_get_git_remote = mocker.MagicMock(return_value="git remote") monkeypatch.setattr(utils, "get_current_code_commit", mock_get_current_code_commit) @@ -278,7 +288,9 @@ def test_get_git_code_identity_returns_entities_from_other_functions(monkeypatch mock_code_identity = mocker.MagicMock() mock_run_context = mocker.MagicMock() - mock_run_context.run_log_store.create_code_identity.return_value = mock_code_identity + mock_run_context.run_log_store.create_code_identity.return_value = ( + mock_code_identity + ) monkeypatch.setattr(utils.context, "run_context", mock_run_context) @@ -360,7 +372,9 @@ def test_get_local_docker_image_id_returns_none_in_exception(mocker, monkeypatch with pytest.MonkeyPatch().context() as ctx: sys.modules["docker"] = mock_docker - mock_client.images.get = mocker.MagicMock(side_effect=Exception("No Image exists")) + mock_client.images.get = mocker.MagicMock( + side_effect=Exception("No Image exists") + ) assert utils.get_local_docker_image_id("test") == "" @@ -389,7 +403,9 @@ def _command_friendly_name(self): test_map_variable = {"a": "b"} try: - assert utils.get_node_execution_command(MockNode(), map_variable=test_map_variable) == ( + assert utils.get_node_execution_command( + MockNode(), map_variable=test_map_variable + ) == ( "runnable execute_single_node test_run_id test_node_id " f"--log-level WARNING --file test_pipeline_file --map-variable '{json.dumps(test_map_variable)}' --config-file test_configuration_file " "--parameters-file test_parameters_file --tag test_tag" diff --git a/tests/test_examples.py b/tests/test_examples.py index 4e338a45..6e911afd 100644 --- a/tests/test_examples.py +++ b/tests/test_examples.py @@ -25,7 +25,9 @@ def container_context(): @contextmanager def chunked_fs_context(): - os.environ["RUNNABLE_CONFIGURATION_FILE"] = "examples/configs/chunked-fs-run_log.yaml" + os.environ["RUNNABLE_CONFIGURATION_FILE"] = ( + "examples/configs/chunked-fs-run_log.yaml" + ) os.environ["RUNNABLE_PRM_envvar"] = "from env" yield del 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