[STORY] Deploy T1-weighted pipeline as XNAT "app"

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Metadata

Epic: #17
Feature: #238
Feature Release:
Required knowledge: mid-level

Description

We need to be able to deploy pipeline build in #230 as XNAT "app" using deployment pipeline

Acceptance Criteria

• 1. Be able to run pipeline as XNAT pipeline
• 2. Users should be able to select their parcellation file (ideally multiple different parcellations)
• 3. Users should be able to access FS output files (potentially option to keep the fastsurfer output or not)

Blocked by

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Tasks

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1. tidy up outputs directory (remove tmp folders, keep/move FS directory after final Parc is generated)
2. create some sort of subject identifier (maybe this is automatically done?)