Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Improve input file processing for yaml (RFAA/Hydra) and json (HF3) files. #19

Open
jscgh opened this issue Oct 21, 2024 · 1 comment
Open

Improve input file processing for yaml (RFAA/Hydra) and json (HF3) files. #19

jscgh opened this issue Oct 21, 2024 · 1 comment
Assignees
@jscgh
Labels
enhancement New feature or request

Comments

@jscgh
Copy link
Collaborator

jscgh commented Oct 21, 2024 •
edited
Loading

Input validation could be modified to better handle yaml and json files.
@jscgh jscgh added the enhancement New feature or request label Oct 21, 2024
@jscgh jscgh self-assigned this Oct 21, 2024
jscgh added a commit that referenced this issue Oct 21, 2024
@jscgh
Updating input to work with .yaml #19 modified: assets/schema_input.…
6fdb111 
…json

	modified:   modules/local/run_rosettafold_all_atom.nf
	modified:   nextflow_schema.json
@jscgh
Copy link
Collaborator Author

jscgh commented Nov 5, 2024

The current workaround allows the files to be passed through, but is not the most elegant solution. I'll leave this open for now.

@jscgh jscgh changed the title Input file validation fails with .yaml files, which are needed for RFAA Improve input file processing for yaml (RFAA/Hyrda) and json (HF3) files. Nov 6, 2024
@jscgh jscgh changed the title Improve input file processing for yaml (RFAA/Hyrda) and json (HF3) files. Improve input file processing for yaml (RFAA/Hydra) and json (HF3) files. Nov 6, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@jscgh jscgh

Labels
enhancement New feature or request
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@jscgh