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Okuonghae_ChaosSolitonsFractals2020_model.xml
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Okuonghae_ChaosSolitonsFractals2020_model.xml
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<?xml version='1.0' encoding='UTF-8'?>
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<rdf:Description>
<dcterms:W3CDTF>2020-11-16T09:01:27Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</COPASI>
</annotation>
</parameter>
<parameter metaid="COPASI16" id="psi" name="psi" value="0.0135" units="unit_0" constant="true">
<annotation>
<COPASI xmlns="http://www.copasi.org/static/sbml">
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#COPASI16">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2020-11-16T09:01:33Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</COPASI>
</annotation>
</parameter>
<parameter metaid="COPASI17" id="theta" name="theta" value="1.8999e-12" units="unit_0" constant="true">
<annotation>
<COPASI xmlns="http://www.copasi.org/static/sbml">
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#COPASI17">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2020-11-16T09:01:36Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</COPASI>
</annotation>
</parameter>
<parameter metaid="COPASI18" id="d_0" name="d_0" value="0.015" units="unit_0" constant="true">
<annotation>
<COPASI xmlns="http://www.copasi.org/static/sbml">
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#COPASI18">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2020-11-16T09:01:39Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</COPASI>
</annotation>
</parameter>
<parameter metaid="COPASI19" id="d_D" name="d_D" value="0.015" units="unit_0" constant="true">
<annotation>
<COPASI xmlns="http://www.copasi.org/static/sbml">
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#COPASI19">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2020-11-16T09:01:51Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</COPASI>
</annotation>
</parameter>
<parameter metaid="COPASI20" id="sigma" name="sigma" value="0.1923076923076923" units="unit_0" constant="true">
<annotation>
<COPASI xmlns="http://www.copasi.org/static/sbml">
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#COPASI20">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2020-11-16T09:04:14Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</COPASI>
</annotation>
</parameter>
<parameter metaid="COPASI21" id="nu" name="nu" value="0.5" units="unit_0" constant="true">
<annotation>
<COPASI xmlns="http://www.copasi.org/static/sbml">
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#COPASI21">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2020-11-16T09:04:28Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</COPASI>
</annotation>
</parameter>
<parameter metaid="COPASI22" id="alpha" name="alpha" value="0.5" units="unit_0" constant="true">
<annotation>
<COPASI xmlns="http://www.copasi.org/static/sbml">
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#COPASI22">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2020-11-16T09:04:35Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</COPASI>
</annotation>
</parameter>
<parameter metaid="COPASI23" id="eps" name="eps" value="0.8" constant="true">
<annotation>
<COPASI xmlns="http://www.copasi.org/static/sbml">
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#COPASI23">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2020-11-16T09:15:09Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</COPASI>
</annotation>
</parameter>
<parameter metaid="COPASI24" id="delta" name="delta" value="0" constant="true">
<annotation>
<COPASI xmlns="http://www.copasi.org/static/sbml">
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#COPASI24">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2020-11-16T09:15:11Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</COPASI>
</annotation>
</parameter>
<parameter metaid="COPASI25" id="lam" name="lam" value="1.80420623178391e-06" constant="false">
<annotation>
<COPASI xmlns="http://www.copasi.org/static/sbml">
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#COPASI25">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2020-11-16T09:16:05Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</COPASI>
</annotation>
</parameter>
<parameter metaid="COPASI26" id="exposed_start" name="exposed_start" value="441" constant="true">
<annotation>
<COPASI xmlns="http://www.copasi.org/static/sbml">
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#COPASI26">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2020-11-23T10:09:40Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</COPASI>
</annotation>
</parameter>
<parameter metaid="COPASI27" id="asymptomatic_start" name="asymptomatic_start" value="188" constant="true">
<annotation>
<COPASI xmlns="http://www.copasi.org/static/sbml">
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#COPASI27">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2020-11-23T10:09:51Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</COPASI>
</annotation>
</parameter>
<parameter metaid="COPASI28" id="symptomatic_start" name="symptomatic_start" value="212" constant="true">
<annotation>
<COPASI xmlns="http://www.copasi.org/static/sbml">
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#COPASI28">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2020-11-23T10:10:09Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</COPASI>
</annotation>
</parameter>
</listOfParameters>
<listOfInitialAssignments>
<initialAssignment symbol="exposed">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> exposed_start </ci>
</math>
</initialAssignment>
<initialAssignment symbol="asymptomatic">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> asymptomatic_start </ci>
</math>
</initialAssignment>
<initialAssignment symbol="symptomatic">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> symptomatic_start </ci>
</math>
</initialAssignment>
</listOfInitialAssignments>
<listOfRules>
<assignmentRule variable="total_pop">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<plus/>
<ci> asymptomatic </ci>
<ci> detected </ci>
<ci> exposed </ci>
<ci> recovered </ci>
<ci> susceptible </ci>
<ci> symptomatic </ci>
</apply>
</math>
</assignmentRule>
<assignmentRule variable="lam">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> transmission_rate_effective </ci>
<apply>
<minus/>
<cn> 1 </cn>
<ci> eps </ci>
</apply>
<apply>
<minus/>
<cn> 1 </cn>
<ci> delta </ci>
</apply>
<apply>
<plus/>
<apply>
<times/>
<ci> alpha </ci>
<ci> asymptomatic </ci>
</apply>
<ci> symptomatic </ci>
</apply>
</apply>
<apply>
<minus/>
<ci> total_pop </ci>
<ci> detected </ci>
</apply>
</apply>
</math>
</assignmentRule>
</listOfRules>
<listOfReactions>
<reaction metaid="COPASI29" id="susceptible_to_exposed" name="susceptible_to_exposed" reversible="false">
<annotation>
<COPASI xmlns="http://www.copasi.org/static/sbml">
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#COPASI29">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2020-11-16T09:03:29Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</COPASI>
</annotation>
<listOfReactants>
<speciesReference species="susceptible" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="exposed" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> Lagos </ci>
<ci> lam </ci>
<ci> susceptible </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction metaid="COPASI30" id="exposed_to_symptomatic" name="exposed_to_symptomatic" reversible="false">
<annotation>
<COPASI xmlns="http://www.copasi.org/static/sbml">
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#COPASI30">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2020-11-16T09:03:50Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</COPASI>
</annotation>
<listOfReactants>
<speciesReference species="exposed" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="symptomatic" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> Lagos </ci>
<apply>
<ci> Rate_Law_for_exposed_to_symptomatic </ci>
<ci> sigma </ci>
<ci> nu </ci>
<ci> exposed </ci>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction metaid="COPASI31" id="exposed_to_asymptopmatic" name="exposed_to_asymptopmatic" reversible="false">
<annotation>
<COPASI xmlns="http://www.copasi.org/static/sbml">
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#COPASI31">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2020-11-16T09:03:58Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</COPASI>
</annotation>
<listOfReactants>
<speciesReference species="exposed" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="asymptomatic" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> Lagos </ci>
<apply>
<ci> Rate_Law_for_exposed_to_asymptopmatic </ci>
<ci> sigma </ci>
<ci> nu </ci>
<ci> exposed </ci>
</apply>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction metaid="COPASI32" id="symptomatic_to_detected" name="symptomatic_to_detected" reversible="false">
<annotation>
<COPASI xmlns="http://www.copasi.org/static/sbml">
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#COPASI32">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2020-11-16T09:05:10Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</COPASI>
</annotation>
<listOfReactants>
<speciesReference species="symptomatic" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="detected" stoichiometry="1"/>
<speciesReference species="detected_cumulative" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> Lagos </ci>
<ci> psi </ci>
<ci> symptomatic </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction metaid="COPASI33" id="asymptomatic_to_detected" name="asymptomatic_to_detected" reversible="false">
<annotation>
<COPASI xmlns="http://www.copasi.org/static/sbml">
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#COPASI33">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2020-11-16T09:05:12Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</COPASI>
</annotation>
<listOfReactants>
<speciesReference species="asymptomatic" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="detected" stoichiometry="1"/>
<speciesReference species="detected_cumulative" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> Lagos </ci>
<ci> theta </ci>
<ci> asymptomatic </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction metaid="COPASI34" id="symptomatic_to_recovered" name="symptomatic_to_recovered" reversible="false">
<annotation>
<COPASI xmlns="http://www.copasi.org/static/sbml">
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#COPASI34">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2020-11-16T09:05:53Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</COPASI>
</annotation>
<listOfReactants>
<speciesReference species="symptomatic" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="recovered" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> Lagos </ci>
<ci> gamma_0 </ci>
<ci> symptomatic </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction metaid="COPASI35" id="asymptomatic_to_recovered" name="asymptomatic_to_recovered" reversible="false">
<annotation>
<COPASI xmlns="http://www.copasi.org/static/sbml">
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#COPASI35">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2020-11-16T09:05:56Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</COPASI>
</annotation>
<listOfReactants>
<speciesReference species="asymptomatic" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="recovered" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> Lagos </ci>
<ci> gamma_a </ci>
<ci> asymptomatic </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction metaid="COPASI36" id="detected_to_recovered" name="detected_to_recovered" reversible="false">
<annotation>
<COPASI xmlns="http://www.copasi.org/static/sbml">
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#COPASI36">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2020-11-16T09:06:02Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</COPASI>
</annotation>
<listOfReactants>
<speciesReference species="detected" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="recovered" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> Lagos </ci>
<ci> gamma_i </ci>
<ci> detected </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction metaid="COPASI37" id="symptomatic_to_deceased" name="symptomatic_to_deceased" reversible="false">
<annotation>
<COPASI xmlns="http://www.copasi.org/static/sbml">
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#COPASI37">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2020-11-16T09:06:34Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</COPASI>
</annotation>
<listOfReactants>
<speciesReference species="symptomatic" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="deceased" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> Lagos </ci>
<ci> d_0 </ci>
<ci> symptomatic </ci>
</apply>
</math>
</kineticLaw>
</reaction>
<reaction metaid="COPASI38" id="detected_to_deceased" name="detected_to_deceased" reversible="false">
<annotation>
<COPASI xmlns="http://www.copasi.org/static/sbml">
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:about="#COPASI38">
<dcterms:created>
<rdf:Description>
<dcterms:W3CDTF>2020-11-16T09:06:41Z</dcterms:W3CDTF>
</rdf:Description>
</dcterms:created>
</rdf:Description>
</rdf:RDF>
</COPASI>
</annotation>
<listOfReactants>
<speciesReference species="detected" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="deceased" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> Lagos </ci>
<ci> d_D </ci>
<ci> detected </ci>
</apply>
</math>
</kineticLaw>
</reaction>
</listOfReactions>
</model>
</sbml>