diff --git a/readthedocs.yml b/.readthedocs.yml similarity index 91% rename from readthedocs.yml rename to .readthedocs.yml index 28ee2a15..637a87a0 100644 --- a/readthedocs.yml +++ b/.readthedocs.yml @@ -19,4 +19,5 @@ python: install: - method: pip path: . + - requirements: docs/requirements.txt system_packages: False diff --git a/bindsnet/analysis/plotting.py b/bindsnet/analysis/plotting.py index 89007b08..81b16109 100644 --- a/bindsnet/analysis/plotting.py +++ b/bindsnet/analysis/plotting.py @@ -186,6 +186,7 @@ def plot_weights( figsize: Tuple[int, int] = (5, 5), cmap: str = "hot_r", save: Optional[str] = None, + title: Optional[str] = None, ) -> AxesImage: # language=rst """ @@ -198,6 +199,7 @@ def plot_weights( :param figsize: Horizontal, vertical figure size in inches. :param cmap: Matplotlib colormap. :param save: file name to save fig, if None = not saving fig. + :param title: Title of the plot. :return: ``AxesImage`` for re-drawing the weights plot. """ local_weights = weights.detach().clone().cpu().numpy() @@ -213,6 +215,8 @@ def plot_weights( ax.set_xticks(()) ax.set_yticks(()) ax.set_aspect("auto") + if title != None: + ax.set_title(title + " Weights") plt.colorbar(im, cax=cax) fig.tight_layout() @@ -241,6 +245,8 @@ def plot_weights( ax.set_xticks(()) ax.set_yticks(()) ax.set_aspect("auto") + if title != None: + ax.set_title(title + " Weights") plt.colorbar(im, cax=cax) fig.tight_layout() @@ -257,6 +263,7 @@ def plot_conv2d_weights( im: Optional[AxesImage] = None, figsize: Tuple[int, int] = (5, 5), cmap: str = "hot_r", + title: Optional[str] = None, ) -> AxesImage: # language=rst """ @@ -268,6 +275,7 @@ def plot_conv2d_weights( :param im: Used for re-drawing the weights plot. :param figsize: Horizontal, vertical figure size in inches. :param cmap: Matplotlib colormap. + :param title: Title of the plot. :return: Used for re-drawing the weights plot. """ @@ -295,6 +303,8 @@ def plot_conv2d_weights( ax.set_xticks(()) ax.set_yticks(()) ax.set_aspect("auto") + if title != None: + ax.set_title(title + " Weights") plt.colorbar(im, cax=cax) fig.tight_layout() @@ -317,6 +327,7 @@ def plot_locally_connected_weights( lines: bool = True, figsize: Tuple[int, int] = (5, 5), cmap: str = "hot_r", + title: Optional[str] = None, ) -> AxesImage: # language=rst """ @@ -337,6 +348,7 @@ def plot_locally_connected_weights( regions. :param figsize: Horizontal, vertical figure size in inches. :param cmap: Matplotlib colormap. + :param title: Title of the plot. :return: Used for re-drawing the weights plot. """ kernel_size = _pair(kernel_size) @@ -373,6 +385,8 @@ def plot_locally_connected_weights( ax.set_xticks(()) ax.set_yticks(()) ax.set_aspect("auto") + if title != None: + ax.set_title(title + " Weights") plt.colorbar(im, cax=cax) fig.tight_layout() @@ -391,6 +405,7 @@ def plot_local_connection_2d_weights( figsize: Tuple[int, int] = (5, 5), cmap: str = "hot_r", color: str = "r", + title: Optional[str] = None, ) -> AxesImage: # language=rst """ @@ -451,6 +466,8 @@ def plot_local_connection_2d_weights( ax.set_xticks(()) ax.set_yticks(()) ax.set_aspect("auto") + if title != None: + ax.set_title(title + " Weights") plt.colorbar(im, cax=cax) fig.tight_layout() diff --git a/bindsnet/network/topology.py b/bindsnet/network/topology.py index 608b38e3..0abcf03e 100644 --- a/bindsnet/network/topology.py +++ b/bindsnet/network/topology.py @@ -63,7 +63,7 @@ def __init__( from ..learning import NoOp - self.update_rule = kwargs.get("update_rule", NoOp) + self.update_rule = kwargs.get("update_rule", None) # Float32 necessary for comparisons with +/-inf self.wmin = Parameter( @@ -775,6 +775,12 @@ def __init__( self.register_buffer("firing_rates", torch.zeros(source.s.shape)) + from ..learning import NoOp + + # Initialize learning rule + if self.update_rule is not None and (self.update_rule == NoOp): + self.update_rule = self.update_rule() + def compute(self, s: torch.Tensor) -> torch.Tensor: # language=rst """ diff --git a/docs/requirements.txt b/docs/requirements.txt new file mode 100644 index 00000000..97acf7a2 --- /dev/null +++ b/docs/requirements.txt @@ -0,0 +1,6 @@ +# Defining the exact version will make sure things don't break +sphinx==6.2.1 +sphinx_rtd_theme==1.2.2 +readthedocs-sphinx-search==0.1.1 +imagecodecs == 2023.3.16 +Jinja2 == 3.1.2 \ No newline at end of file diff --git a/poetry.lock b/poetry.lock index 04f40bce..2f128dcc 100644 --- a/poetry.lock +++ b/poetry.lock @@ -26,26 +26,15 @@ files = [ dev = ["aiounittest (==1.4.1)", "attribution (==1.6.2)", "black (==23.3.0)", "coverage[toml] (==7.2.3)", "flake8 (==5.0.4)", "flake8-bugbear (==23.3.12)", "flit (==3.7.1)", "mypy (==1.2.0)", "ufmt (==2.1.0)", "usort (==1.0.6)"] docs = ["sphinx (==6.1.3)", "sphinx-mdinclude (==0.5.3)"] -[[package]] -name = "alabaster" -version = "0.7.13" -description = "A configurable sidebar-enabled Sphinx theme" -optional = false -python-versions = ">=3.6" -files = [ - 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