Refactoring PAML naming to LabOP

[photocyte]

Per #107 & Dan's recent email to the mailing list (https://groups.google.com/g/bioprotocols/c/ijV7jHK5t2w) PAML is being renamed to LabOP.

Clearly there are a lot of places to make this replacement rename, and it might take awhile to be fully accomplished. Here is a short list that can start taking a crack at...

(1) This repo name itself & included documentation pamled
(2) The Github landing page (https://github.com/Bioprotocols) (excluding the logo as of 2022-10-18)
(3) The Bioprotocols.org landing page (https://bioprotocols.github.io/paml/ <- note paml in URL)
(4) Places in code in various repos... "labop" repo
(5) Documentation on Open Collective (https://opencollective.com/bioprotocols)

[rpgoldman]

Suggest we unpack these into individual issues. The rationale is that if we bundle multiple to-do items into one issue, then it is very hard for us to tell if/when they are done and what remains to do.

Need to carefully maintain all the old pointers, as well.

Not sure what to do with the OWL stuff -- we're all just at the mercy of what the various tools can do with redirection/sameAs.

[danbryce]

I pushed e807e5f, which renames PAML to LabOP. This take of 1 and 4 (for this repo).

[photocyte]

Hi @rpgoldman , I'm totally in support of separate issues - I'm personally planning on sticking to renaming in the documentation & letting others rename in code so I don't break things. But, if making separate issues, might be nice to have them make a bidirectional link to this issue just so they're easy to find.

Regarding (2), I've updated the text documentation, but I don't know how to change the overall logo at the top left of the page. Maybe @danbryce has that authorization?

I'll edit & strike out the finished items on my first post in this issue.

[danbryce]

I fixed it.

…

On Oct 18, 2022, at 10:25 AM, Timothy R. Fallon, PhD ***@***.***> wrote: Hi @rpgoldman , I'm totally in support of separate issues - I'm personally planning on sticking to renaming in the documentation & letting others rename in code so I don't break thing. But, if making separate issues, might be nice to have them make a bidirectional link to this issue just so they're easy to find. Regarding (2), I've updated the text documentation, but I don't know how to change the overall logo at the top left of the page. Maybe @danbryce has that authorization? I'll edit & strike out the finished items on my first post in this issue. — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you were mentioned.

[photocyte]

I believe this is probably completed? Closing if so. Can reopen if not.