Releases: BlueBrain/NeuroM
Releases · BlueBrain/NeuroM
Release 3.2.5
What's Changed
- Remove shebang lines by @musicinmybrain in #1083
- Replace PyPI mock test dependency with unittest.mock by @musicinmybrain in #1084
- Add Zenodo author list by @eleftherioszisis in #1086
- Set readthedocs python to a version we know we have morphio wheels for by @mgeplf in #1087
New Contributors
- @musicinmybrain made their first contribution in #1083
Full Changelog: v3.2.4...v3.2.5
Release 3.2.4
What's Changed
- Fix Rectangle kwarg error due to matplotlib==3.8 by @eleftherioszisis in #1082
Full Changelog: v3.2.3...v3.2.4
Release 3.2.3
What's Changed
- Remove duplicated deps jinja, sphinx by @stefanoantonel in #1043
- Remove single point contour somas in h5 and asc tests by @mgeplf in #1045
- Check that soma is not empty when features need it by @adrien-berchet in #1073
- Keep in sync with morphio 3.3.6, and the new SWC types that are avail… by @mgeplf in #1075
- Can pass List[Population] args to neurom.app.morph_stats.extract_dataframe by @adrien-berchet in #1076
- Fix neurom.app.morph_stats.extract_dataframe for Population objects with several workers by @adrien-berchet in #1080
New Contributors
- @stefanoantonel made their first contribution in #1043
Full Changelog: v3.2.0...v3.2.3
v3.2.2
What's Changed
- Fix QhullError warning by @GianlucaFicarelli in #1063
New Contributors
- @GianlucaFicarelli made their first contribution in #1063
Full Changelog: v3.2.1...v3.2.2
v3.2.1
What's Changed
- Remove duplicated deps jinja, sphinx by @stefanoantonel in #1043
- Remove single point contour somas in h5 and asc tests by @mgeplf in #1045
- Fix view cli by @arnaudon in #1051
- Fix coverage by @eleftherioszisis in #1056
- Fix: extract_stats could not work on single neurite by @adrien-berchet in #1060
- Fix language detection by @adrien-berchet in #1058
New Contributors
- @stefanoantonel made their first contribution in #1043
Full Changelog: v3.2.0...v3.2.1
v3.2.0
What's Changed
- Deprecate python3.6 by @eleftherioszisis in #976
- Add trunk_angles_inter_types feature and make trunk_angles more generic by @adrien-berchet in #965
- Remove dynamic test creation of _make_monotonic and _make_flat by @mgeplf in #980
- Use soma center in sholl_frequency distance calculation by @eleftherioszisis in #989
- Fix the trunk_origin_radii feature by @adrien-berchet in #986
- Fix
sholl_frequency
if neurite_type is not available by @eleftherioszisis in #990 - Make output file in
morph_check
mandatory by @eleftherioszisis in #992 - Fix doc of neurom.core.morphology.Neurite.iter_sections method by @adrien-berchet in #994
- Add volume density at the morphology level by @eleftherioszisis in #996
- Remove duplicate points in principal_direction_extents by @eleftherioszisis in #999
- Fix partition_asymmetry Uylings to not throw for bifurcations with leaves by @eleftherioszisis in #1001
- Make deprecation warnings respect pre-existing warnings configuration by @eleftherioszisis in #1002
- Standardize flatten iterator recipe by @eleftherioszisis in #1003
- Generalize partition asymmetry by @eleftherioszisis in #1006
- Fix principal direction extent calculation by @eleftherioszisis in #1008
- Implement new shape related features (placeholder features) by @eleftherioszisis in #1013
- Update
neurom.features.get
docstring with available builtin features by @eleftherioszisis in #1016 - Sort principal direction extents in descending order by @eleftherioszisis in #1017
- Return nan if no points found in shape features by @eleftherioszisis in #1018
- Fix: kwargs are unnecessarily updated in extract_stats by @adrien-berchet in #1020
- Allow using lists of kwargs in morph_stats features by @eleftherioszisis in #1021
- Implement new feature of length above soma by @eleftherioszisis in #1023
- Exit early if no points, to avoid hull warning by @eleftherioszisis in #1024
Full Changelog: v3.1.0...v3.2.0
v3.1.0
What's Changed
- Add new features total_width, total_height and total_depth by @eleftherioszisis in #974
Full Changelog: v3.0.2...v3.1.0
v3.0.2
What's Changed
- Add example astrocyte analysis notebook. by @pgetta in #957
- fix readthedocs build by @asanin-epfl in #958
- Update example astrocyte analysis notebook by @pgetta in #959
- Clean up the output when creating figures in example astrocyte analysis notebook by @pgetta in #960
- fix the link to the migration doc by @asanin-epfl in #961
- Improve astrocyte analysis notebook by @pgetta in #962
- Fix typo in astrocyte analysis notebook by @pgetta in #963
- fix raw option in morph_stat by @arnaudon in #964
- Delete all requirements txt files and update documentation accordingly by @asanin-epfl in #967
- replace outdated requirements_docs with docs extras by @asanin-epfl in #968
- Add jupyterlab-plotly extension to MyBinder postBuild by @pgetta in #970
- unifurcation check by @arnaudon in #972
New Contributors
Full Changelog: v3.0.1...v3.0.2
v3.0.1
v3.0.0
- rename neuron to morphology
- refactor features
- refactor viewer
- allow pass arguments to neurom stats
See CHANGELOG.rst for more details on changes.