From 509b20e9fbb978ce091eccab75cba665653aac7e Mon Sep 17 00:00:00 2001 From: Judy Yao Date: Tue, 18 Jun 2024 14:35:16 -0400 Subject: [PATCH 1/6] sync with last release --- server/LDcommon.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/server/LDcommon.py b/server/LDcommon.py index 8738df27..55f97c2d 100644 --- a/server/LDcommon.py +++ b/server/LDcommon.py @@ -437,7 +437,7 @@ def get_query_variant_c(snp_coord, pop_ids, request, genome_build, is_output,out output["error"] = snp_coord[0]+" Variant is not in 1000G reference panel." + str(output["error"] if "error" in output else "") #output["warning"] = snp_coord[0]+" Variant is not in 1000G reference panel." + str(output["warning"] if "warning" in output else "") if is_output: - #subprocess.call("rm " + tmp_dir + "pops_" + request + ".txt", shell=True) + subprocess.call("rm " + tmp_dir + "pops_" + request + ".txt", shell=True) subprocess.call("rm " + tmp_dir + "*" + request + "*.vcf", shell=True) return (None, None, queryVariantWarnings) elif len(tabix_query_snp_out) > 1: @@ -456,7 +456,7 @@ def get_query_variant_c(snp_coord, pop_ids, request, genome_build, is_output,out output["error"] = "Variant is not in 1000G reference panel." + str(output["error"] if "error" in output else "") #output["warning"] = snp_coord[0]+" Variant is not in 1000G reference panel." + str(output["warning"] if "warning" in output else "") if is_output: - #subprocess.call("rm " + tmp_dir + "pops_" + request + ".txt", shell=True) + subprocess.call("rm " + tmp_dir + "pops_" + request + ".txt", shell=True) subprocess.call("rm " + tmp_dir + "*" + request + "*.vcf", shell=True) return (None,None, queryVariantWarnings) else: From b1421a7f42c0af788a6c2d872afbb622a92b70fe Mon Sep 17 00:00:00 2001 From: Brian Park Date: Wed, 19 Jun 2024 14:19:29 -0400 Subject: [PATCH 2/6] specify numpy version --- server/requirements.txt | 1 + 1 file changed, 1 insertion(+) diff --git a/server/requirements.txt b/server/requirements.txt index 99c3dac5..a6b1d9fa 100644 --- a/server/requirements.txt +++ b/server/requirements.txt @@ -5,6 +5,7 @@ Flask==1.1.4 jinja2==2.11.3 MarkupSafe==1.1.1 mod_wsgi +numpy==1.23.1 pymongo python-dateutil python-dotenv From 75ac9d8a2344bf8c8e0d7bb81df29be9d3bc4bf0 Mon Sep 17 00:00:00 2001 From: Judy Yao Date: Fri, 21 Jun 2024 10:30:47 -0400 Subject: [PATCH 3/6] add 5.6.7 and 5.6.8 release message --- client/news.html | 10 ++++++++-- 1 file changed, 8 insertions(+), 2 deletions(-) diff --git a/client/news.html b/client/news.html index 46c9ae99..6ef5817a 100644 --- a/client/news.html +++ b/client/news.html @@ -1,7 +1,13 @@ -

LDlink 5.6.7 Release (06/20/2024)

+

LDlink 5.6.8 Release (06/20/2024)

  • Removed domain change notice
    • -
  • Added usa government official flag banner
    • +
  • Added USA government official flag banner
    • +
  • specify numpy version
    • +
+
+

LDlink 5.6.7 release (02/21/2024)

+
    +
  • Forge DB Scores update (no code release)

LDlink 5.6.6 Release (10/20/2023)

From 91faccbef14cfa474042171f829187cb742bab56 Mon Sep 17 00:00:00 2001 From: Judy Yao Date: Fri, 21 Jun 2024 11:15:16 -0400 Subject: [PATCH 4/6] update release date --- client/news.html | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/client/news.html b/client/news.html index 6ef5817a..29243d4b 100644 --- a/client/news.html +++ b/client/news.html @@ -1,4 +1,4 @@ -

LDlink 5.6.8 Release (06/20/2024)

+

LDlink 5.6.8 Release (06/21/2024)