diff --git a/assets/samplesheet_test.csv b/assets/samplesheet_test.csv deleted file mode 100644 index 5c05db4..0000000 --- a/assets/samplesheet_test.csv +++ /dev/null @@ -1,3 +0,0 @@ -sample,fastq_1,fastq_2,treat_or_ctrl -plasmid,data/test/ERR376998.fastq.gz,,control -ESC1,data/test/ERR376999.fastq.gz,,treatment diff --git a/assets/samplesheet_test_biowulf.csv b/assets/samplesheet_test_biowulf.csv new file mode 100644 index 0000000..e77f08e --- /dev/null +++ b/assets/samplesheet_test_biowulf.csv @@ -0,0 +1,3 @@ +sample,fastq_1,fastq_2,treat_or_ctrl +plasmid,/data/CCBR_Pipeliner/testdata/CRUISE/ERR376998.fastq.gz,,control +ESC1,/data/CCBR_Pipeliner/testdata/CRUISE/ERR376999.fastq.gz,,treatment diff --git a/conf/test.config b/conf/test.config index 9fcfd53..43ed959 100644 --- a/conf/test.config +++ b/conf/test.config @@ -2,7 +2,7 @@ params { config_profile_name = 'Test dataset' config_profile_description = 'Minimal test dataset for pipeline functionality' - input = 'assets/samplesheet_test.csv' + input = 'assets/samplesheet_test_biowulf.csv' library = 'assets/lib/yusa_library.csv' outdir = 'results/test' exp_name = 'test'