diff --git a/CHANGELOG.md b/CHANGELOG.md index 422037f..cc53b04 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,15 +1,16 @@ - ## RENEE development version - Minor documentation improvements. (#100, @kelly-sovacool) - Fix RNA report bug, caused by hard-coding of PC1-3, when only PC1-2 were generated. (#104, @slsevilla) - Allow printing the version or help message even if singularity is not in the path. (#110, @kelly-sovacool) -- Set RSeQC envmodule version to 4.0.0, which synchronizes it with the version in the docker container used by singularity. (#122, @kelly-sovacool) +- Fix RSeQC environments: + - Set RSeQC envmodule version to 4.0.0, which synchronizes it with the version in the docker container used by singularity. (#122, @kelly-sovacool) + - Update docker with RSeQC's tools properly added to the path. (#123, @kelly-sovacool) ## RENEE 2.5.11 - Create a citation file to describe how to cite RENEE. (#86, @kelly-sovacool) -- Fix: set HPC-specific fastq screen config and kraken DB paths for Biowulf and FRCE. (#78, @kelly-sovacool) +- Set HPC-specific fastq screen config and kraken DB paths for Biowulf and FRCE. (#78, @kelly-sovacool) - Previously, FRCE users were required to set `--shared-resources`, which were kept in a location on FRCE not under version control. This change brings the paths under version control so they're easier to recover if deleted. diff --git a/config/containers/images.json b/config/containers/images.json index ce8c3fe..f33477b 100644 --- a/config/containers/images.json +++ b/config/containers/images.json @@ -17,7 +17,7 @@ "qualimap": "docker://nciccbr/ccbr_qualimap:v0.0.1", "rna": "docker://nciccbr/ccbr_rna:v0.0.1", "rsem": "docker://nciccbr/ccbr_rsem_1.3.3:v1.0", - "rseqc": "docker://nciccbr/ccbr_rseqc_4.0.0:v1.0", + "rseqc": "docker://nciccbr/ccbr_rseqc_4.0.0:v2", "rstat": "docker://nciccbr/ccbr_rstat:v0.0.1" } }