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image caching (like renee cache) for nextflow pipelines #17

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kelly-sovacool opened this issue Oct 25, 2024 · 0 comments
Open

image caching (like renee cache) for nextflow pipelines #17

kelly-sovacool opened this issue Oct 25, 2024 · 0 comments

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@kelly-sovacool
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kelly-sovacool commented Oct 25, 2024

Implement similar logic as renee cache and image_cache() for nextflow pipelines, so a shared directory of SIFs can be used.

groovy config

python code for reading groovy conf/containers.config files: https://stackoverflow.com/questions/32216707/parsing-a-groovy-file-in-python

or quick way with bash:
cat conf/containers.config | grep '=' | sed 's/.*= /docker:\/\//g' | sed "s/'//g"

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