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feat: draw pca plot #6

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kelly-sovacool opened this issue Oct 12, 2023 · 1 comment

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reneeTools

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kelly-sovacool commented Oct 12, 2023 •

edited by sync-by-unito bot

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see https://github.com/CCBR/Pipeliner/blob/master/Results-template/Scripts/Deseq2Report.Rmd

for a tidy style of running and plotting PCA, see https://github.com/CCBR/CHAMPAGNE/blob/efcc76f0c54977b881954168b2ccd7adae8086a0/bin/plot_jaccard.R#L11-L33

kopardev added the reneeTools label

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kelly-sovacool commented Oct 12, 2023

get eigenvalues for first component, sort them, show top and bottom N genes

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