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Create function: filter_counts #38

Merged
merged 81 commits into from
Oct 8, 2024
Merged

Create function: filter_counts #38

merged 81 commits into from
Oct 8, 2024

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kelly-sovacool
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@kelly-sovacool kelly-sovacool commented Jul 9, 2024

Changes

Create filter_counts function + helper functions from the NIDAP filtering template.

new functions

  • filter_counts
  • remove_low_count_genes
  • get_random_colors
  • plot_heatmap
  • plot_histogram
  • plot_pca
  • rename_samples
  • validate_sample_metadata

new datasets

  • nidap_clean_raw_counts
  • nidap_sample_metadata
  • nidap_filtered_counts

Issues

PR Checklist

(Strikethrough any points that are not applicable.)

  • This comment contains a description of changes with justifications, with any relevant issues linked.
  • Write unit tests for any new features, bug fixes, or other code changes.
  • Update the docs if there are any API changes (roxygen2 comments, vignettes, readme, etc.).
  • Update NEWS.md with a short description of any user-facing changes and reference the PR number. Follow the style described in https://style.tidyverse.org/news.html
  • Run devtools::check() locally and fix all notes, warnings, and errors.

@kopardev kopardev added the reneeTools RepoName label Jul 9, 2024
@kelly-sovacool kelly-sovacool added the poc proof of concept [ iteration 1 ] label Jul 9, 2024

This comment was marked as outdated.

@kelly-sovacool kelly-sovacool marked this pull request as ready for review October 8, 2024 03:18
@kelly-sovacool kelly-sovacool merged commit 4f0194d into main Oct 8, 2024
@kelly-sovacool kelly-sovacool deleted the iss-35 branch October 8, 2024 16:09
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