bioblend: Internal Server Error

[hechth]

Hi, I'm trying to get info on a workflow invocation step (so that I can automatically re-run all failed jobs from a step) using bioblend.

Unfortunately I'm getting the following error:

Traceback (most recent call last):
  File "/home/hechth/dev/specdatri/resume_workflow_jobs.py", line 16, in <module>
    step = wf.show_invocation_step(wf_id, invocation_id, "55639049d2587598")
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/hechth/micromamba/envs/bioblend/lib/python3.12/site-packages/bioblend/galaxy/workflows/__init__.py", line 629, in show_invocation_step
    return self._get(url=url)
           ^^^^^^^^^^^^^^^^^^
  File "/home/hechth/micromamba/envs/bioblend/lib/python3.12/site-packages/bioblend/galaxy/client.py", line 134, in _get
    raise ConnectionError(
bioblend.ConnectionError: GET: error 500: b'Internal Server Error', 0 attempts left: Internal Server Error

Any idea what this could be related to?

[martindemko]

Hi,
yesterday I saw a weird network behaviour when I tried to access the interface. It could be connected. But today it looks good. At leat from my perspective. How many times did you try? Could you try again in 10 or 30 min? If the trouble persists?
Thanks

[hechth]

Still the same error.

[zsalvet]

Hi,
you should report exact timestamp of the request, I can see no 500 response in our logs near the time of your comment.

[hechth]

2024-12-03 1356.16.161459
Traceback (most recent call last):
  File "/home/hechth/dev/specdatri/resume_workflow_jobs.py", line 16, in <module>
    step = wf.show_invocation_step(wf_id, invocation_id, "55639049d2587598")
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/hechth/micromamba/envs/bioblend/lib/python3.12/site-packages/bioblend/galaxy/workflows/__init__.py", line 629, in show_invocation_step
    return self._get(url=url)
           ^^^^^^^^^^^^^^^^^^
  File "/home/hechth/micromamba/envs/bioblend/lib/python3.12/site-packages/bioblend/galaxy/client.py", line 134, in _get
    raise ConnectionError(
bioblend.ConnectionError: GET: error 500: b'Internal Server Error', 0 attempts left: Internal Server Error

[martindemko]

I believe that your bioblend version is not compatible with our API, because what your code calls is actually this:
/api/workflows/8beeeb724b45ff06/invocations/8bc463fd51e0b733/steps/55639049d2587598
and what works is this:
/api/workflows/8beeeb724b45ff06/invocations/8bc463fd51e0b733
I can see that step there in the list of steps, but I'm afraid that's not the proper API call to get access to that step. Could you please tell me the bioblend version you are using, please? Thanks

[hechth]

so the substeps are not supported?

I'm using bioblend version 1.4.0