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sample_dag.dot
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digraph snakemake_dag {
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2[label = "align_from_fastq\nsample: TUMOR", color = "0.22 0.6 0.85", style="rounded"];
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11[label = "map_stats", color = "0.00 0.6 0.85", style="rounded"];
12[label = "Metrics_sentieon", color = "0.34 0.6 0.85", style="rounded"];
13[label = "Metrics_sentieon_plots", color = "0.29 0.6 0.85", style="rounded"];
14[label = "Metrics_sentieon", color = "0.34 0.6 0.85", style="rounded"];
15[label = "Metrics_sentieon_plots", color = "0.29 0.6 0.85", style="rounded"];
16[label = "metrics_collect_target_summaries", color = "0.51 0.6 0.85", style="rounded"];
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42[label = "vcfVEP\ncaller: tnscope.output\ntype: twist", color = "0.19 0.6 0.85", style="rounded"];
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45[label = "vcfVEP\ncaller: tnscope.output.twist\ntype: filtered", color = "0.19 0.6 0.85", style="rounded"];
46[label = "filter_raw_vcf\ncaller: tnscope", color = "0.34 0.6 0.85", style="rounded"];
47[label = "somatic_gzip_filtered_vcf", color = "0.50 0.6 0.85", style="rounded"];
48[label = "vcf2maf", color = "0.46 0.6 0.85", style="rounded"];
49[label = "vcfVEP\ntype: filter", color = "0.19 0.6 0.85", style="rounded"];
50[label = "mutationSignature\ncaller: tnscope", color = "0.63 0.6 0.85", style="rounded"];
51[label = "summarize_SNV_mutations\ncaller: tnscope", color = "0.46 0.6 0.85", style="rounded"];
52[label = "summarize_somatic_mutations\ncaller: tnscope", color = "0.20 0.6 0.85", style="rounded"];
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54[label = "somatic_json", color = "0.33 0.6 0.85", style="rounded"];
55[label = "Puritycalls_Facets\nrun: RUN", color = "0.26 0.6 0.85", style="rounded"];
56[label = "purityprocessing_filter", color = "0.41 0.6 0.85", style="rounded"];
57[label = "purityplots_postprocessing", color = "0.35 0.6 0.85", style="rounded"];
58[label = "purity_callGainLoss", color = "0.27 0.6 0.85", style="rounded"];
59[label = "clonality_sequenza", color = "0.40 0.6 0.85", style="rounded"];
60[label = "clonality_addheader", color = "0.13 0.6 0.85", style="rounded"];
61[label = "clonality_sequenza_binning", color = "0.64 0.6 0.85", style="rounded"];
62[label = "clonality_mergeChroms", color = "0.28 0.6 0.85", style="rounded"];
63[label = "clonality_sequenza_multibam2seqz\nrun: RUN", color = "0.32 0.6 0.85", style="rounded"];
64[label = "clonality_callGainLoss", color = "0.38 0.6 0.85", style="rounded"];
65[label = "clonality_sequenza2pyclone6", color = "0.23 0.6 0.85", style="rounded"];
66[label = "clonality_pyclone6_writeOut", color = "0.15 0.6 0.85", style="rounded"];
67[label = "clonality_pyclone6_fit", color = "0.10 0.6 0.85", style="rounded"];
68[label = "clonality_pyclone6_summarizeResults", color = "0.18 0.6 0.85", style="rounded"];
69[label = "clonality_json", color = "0.55 0.6 0.85", style="rounded"];
70[label = "cnvkit\nrun: RUN\ntmr: TUMOR", color = "0.61 0.6 0.85", style="rounded"];
71[label = "cnvkit_enhance", color = "0.17 0.6 0.85", style="rounded"];
72[label = "cnvkit_callGainLoss", color = "0.53 0.6 0.85", style="rounded"];
73[label = "cnvkit_rename", color = "0.03 0.6 0.85", style="rounded"];
74[label = "neoantigen_pvacseq\ntumor: TUMOR", color = "0.42 0.6 0.85", style="rounded"];
75[label = "neoantigen_vep_annotate", color = "0.36 0.6 0.85", style="rounded"];
76[label = "optitype_hlatyping", color = "0.59 0.6 0.85", style="rounded"];
77[label = "optitype_bamtofastq", color = "0.14 0.6 0.85", style="rounded"];
78[label = "optitype_extract_chr6", color = "0.61 0.6 0.85", style="rounded"];
79[label = "optitype_index_chr6bam", color = "0.12 0.6 0.85", style="rounded"];
80[label = "hlahd", color = "0.30 0.6 0.85", style="rounded"];
81[label = "neoantigen_getNeoantigenList", color = "0.09 0.6 0.85", style="rounded"];
82[label = "neoantigen_json", color = "0.65 0.6 0.85", style="rounded"];
83[label = "consensus_cnvkit_sequenza", color = "0.09 0.6 0.85", style="rounded"];
84[label = "consensus_cnvkit_facets", color = "0.53 0.6 0.85", style="rounded"];
85[label = "consensus_sequenza_facets", color = "0.24 0.6 0.85", style="rounded"];
86[label = "consensus_all", color = "0.58 0.6 0.85", style="rounded"];
87[label = "consensus_all_merge\ncnv_type: GAIN", color = "0.00 0.6 0.85", style="rounded"];
88[label = "consensus_all_merge\ncnv_type: LOSS", color = "0.00 0.6 0.85", style="rounded"];
89[label = "copynumber_json", color = "0.46 0.6 0.85", style="rounded"];
90[label = "msisensor2_copy", color = "0.23 0.6 0.85", style="rounded"];
91[label = "msisensor2\nrun: RUN", color = "0.25 0.6 0.85", style="rounded"];
92[label = "tcellextrect\nrun: RUN", color = "0.33 0.6 0.85", style="rounded"];
93[label = "CoverageMetrics_sentieon", color = "0.30 0.6 0.85", style="rounded"];
94[label = "addExtension\nregion: coverage", color = "0.04 0.6 0.85", style="rounded"];
95[label = "CoverageMetrics_sentieon", color = "0.30 0.6 0.85", style="rounded"];
96[label = "addExtension\nregion: coverage", color = "0.04 0.6 0.85", style="rounded"];
97[label = "optitype_hlatyping", color = "0.59 0.6 0.85", style="rounded"];
98[label = "optitype_bamtofastq", color = "0.14 0.6 0.85", style="rounded"];
99[label = "optitype_extract_chr6", color = "0.61 0.6 0.85", style="rounded"];
100[label = "optitype_index_chr6bam", color = "0.12 0.6 0.85", style="rounded"];
101[label = "xhla", color = "0.31 0.6 0.85", style="rounded"];
102[label = "xhla", color = "0.31 0.6 0.85", style="rounded"];
103[label = "report_copy_runInfoFiles", color = "0.24 0.6 0.85", style="rounded"];
104[label = "report_meta_version", color = "0.25 0.6 0.85", style="rounded"];
105[label = "report_meta_software", color = "0.57 0.6 0.85", style="rounded"];
106[label = "report_data_quality_table", color = "0.37 0.6 0.85", style="rounded"];
107[label = "report_data_quality_plots_table", color = "0.11 0.6 0.85", style="rounded"];
108[label = "report_data_quality_gcPlot", color = "0.44 0.6 0.85", style="rounded"];
109[label = "report_data_quality_qualityScore", color = "0.28 0.6 0.85", style="rounded"];
110[label = "report_data_quality_qualityByCycle", color = "0.51 0.6 0.85", style="rounded"];
111[label = "report_data_quality_insertSize", color = "0.43 0.6 0.85", style="rounded"];
112[label = "report_data_quality_gcPlot", color = "0.44 0.6 0.85", style="rounded"];
113[label = "report_data_quality_qualityScore", color = "0.28 0.6 0.85", style="rounded"];
114[label = "report_data_quality_qualityByCycle", color = "0.51 0.6 0.85", style="rounded"];
115[label = "report_data_quality_insertSize", color = "0.43 0.6 0.85", style="rounded"];
116[label = "report_data_quality_coverage", color = "0.06 0.6 0.85", style="rounded"];
117[label = "report_somatic_variants_maftoolsPlots", color = "0.29 0.6 0.85", style="rounded"];
118[label = "report_somatic_variants_summary_tbls", color = "0.52 0.6 0.85", style="rounded"];
119[label = "report_somatic_variants_germlineCompare", color = "0.12 0.6 0.85", style="rounded"];
120[label = "report_somatic_variants_legoPlot", color = "0.54 0.6 0.85", style="rounded"];
121[label = "report_somatic_variants_lollipop_table", color = "0.51 0.6 0.85", style="rounded"];
122[label = "report_copynumberPlot", color = "0.14 0.6 0.85", style="rounded"];
123[label = "report_copy_number_clonality", color = "0.55 0.6 0.85", style="rounded"];
124[label = "report_copy_number_purity", color = "0.40 0.6 0.85", style="rounded"];
125[label = "report_neoantigens_HLA", color = "0.40 0.6 0.85", style="rounded"];
126[label = "hlahd", color = "0.30 0.6 0.85", style="rounded"];
127[label = "report_neoantigens_neoantigen_list", color = "0.01 0.6 0.85", style="rounded"];
128[label = "report_neoantigens_tcellextrect", color = "0.15 0.6 0.85", style="rounded"];
129[label = "report_neoantigens_msisensor2", color = "0.01 0.6 0.85", style="rounded"];
130[label = "report_generate_json", color = "0.29 0.6 0.85", style="rounded"];
131[label = "align_json_mapping\nrun: RUN", color = "0.54 0.6 0.85", style="rounded"];
132[label = "metrics_json_coverage\nrun: RUN", color = "0.05 0.6 0.85", style="rounded"];
133[label = "metrics_json_gc_content\nrun: RUN", color = "0.02 0.6 0.85", style="rounded"];
134[label = "metrics_json_insert_size\nrun: RUN", color = "0.13 0.6 0.85", style="rounded"];
135[label = "metrics_json_mean_quality\nrun: RUN", color = "0.07 0.6 0.85", style="rounded"];
136[label = "report_json_hla\nrun: RUN", color = "0.59 0.6 0.85", style="rounded"];
137[label = "tcellextrect_json", color = "0.36 0.6 0.85", style="rounded"];
138[label = "msisensor2_json", color = "0.66 0.6 0.85", style="rounded"];
139[label = "purity_json", color = "0.58 0.6 0.85", style="rounded"];
140[label = "report_auto_render", color = "0.47 0.6 0.85", style="rounded"];
141[label = "report_gzipReport", color = "0.19 0.6 0.85", style="rounded"];
142[label = "tar_benchmarks", color = "0.03 0.6 0.85", style="rounded"];
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80 -> 136
92 -> 137
90 -> 138
57 -> 139
103 -> 140
104 -> 140
105 -> 140
106 -> 140
107 -> 140
116 -> 140
117 -> 140
118 -> 140
119 -> 140
120 -> 140
121 -> 140
122 -> 140
123 -> 140
124 -> 140
125 -> 140
127 -> 140
128 -> 140
129 -> 140
130 -> 140
140 -> 141
1 -> 142
3 -> 142
5 -> 142
7 -> 142
9 -> 142
12 -> 142
13 -> 142
14 -> 142
15 -> 142
16 -> 142
21 -> 142
22 -> 142
23 -> 142
24 -> 142
25 -> 142
26 -> 142
27 -> 142
28 -> 142
29 -> 142
30 -> 142
31 -> 142
33 -> 142
34 -> 142
35 -> 142
37 -> 142
38 -> 142
39 -> 142
40 -> 142
41 -> 142
43 -> 142
44 -> 142
46 -> 142
47 -> 142
48 -> 142
50 -> 142
51 -> 142
52 -> 142
53 -> 142
54 -> 142
55 -> 142
56 -> 142
57 -> 142
58 -> 142
59 -> 142
64 -> 142
65 -> 142
66 -> 142
68 -> 142
69 -> 142
70 -> 142
71 -> 142
72 -> 142
73 -> 142
74 -> 142
81 -> 142
82 -> 142
83 -> 142
84 -> 142
85 -> 142
86 -> 142
87 -> 142
88 -> 142
89 -> 142
90 -> 142
92 -> 142
93 -> 142
94 -> 142
20 -> 142
19 -> 142
95 -> 142
96 -> 142
18 -> 142
17 -> 142
76 -> 142
78 -> 142
77 -> 142
97 -> 142
99 -> 142
98 -> 142
101 -> 142
102 -> 142
103 -> 142
104 -> 142
105 -> 142
106 -> 142
107 -> 142
116 -> 142
117 -> 142
118 -> 142
119 -> 142
120 -> 142
121 -> 142
122 -> 142
123 -> 142
124 -> 142
125 -> 142
127 -> 142
128 -> 142
129 -> 142
130 -> 142
140 -> 142
141 -> 142
}