diff --git a/.doctrees/01_Sample_preparation/Considerations.doctree b/.doctrees/01_Sample_preparation/Considerations.doctree
index b9dc6e82..da7b0158 100644
Binary files a/.doctrees/01_Sample_preparation/Considerations.doctree and b/.doctrees/01_Sample_preparation/Considerations.doctree differ
diff --git a/.doctrees/01_Sample_preparation/Experimental_design.doctree b/.doctrees/01_Sample_preparation/Experimental_design.doctree
index 81198764..0f784f7a 100644
Binary files a/.doctrees/01_Sample_preparation/Experimental_design.doctree and b/.doctrees/01_Sample_preparation/Experimental_design.doctree differ
diff --git a/.doctrees/01_Sample_preparation/Reproducibility.doctree b/.doctrees/01_Sample_preparation/Reproducibility.doctree
index 465699e7..16e652b3 100644
Binary files a/.doctrees/01_Sample_preparation/Reproducibility.doctree and b/.doctrees/01_Sample_preparation/Reproducibility.doctree differ
diff --git a/.doctrees/01_Sample_preparation/Resources.doctree b/.doctrees/01_Sample_preparation/Resources.doctree
index 5a80f602..26647751 100644
Binary files a/.doctrees/01_Sample_preparation/Resources.doctree and b/.doctrees/01_Sample_preparation/Resources.doctree differ
diff --git a/.doctrees/02_Sample_acquisition/Introduction.doctree b/.doctrees/02_Sample_acquisition/Introduction.doctree
index 86876b4d..a05dfadd 100644
Binary files a/.doctrees/02_Sample_acquisition/Introduction.doctree and b/.doctrees/02_Sample_acquisition/Introduction.doctree differ
diff --git a/.doctrees/02_Sample_acquisition/Picking.doctree b/.doctrees/02_Sample_acquisition/Picking.doctree
index e8808a2f..78e18bb0 100644
Binary files a/.doctrees/02_Sample_acquisition/Picking.doctree and b/.doctrees/02_Sample_acquisition/Picking.doctree differ
diff --git a/.doctrees/02_Sample_acquisition/Practical_considerations.doctree b/.doctrees/02_Sample_acquisition/Practical_considerations.doctree
index 1b37a329..6018d6c6 100644
Binary files a/.doctrees/02_Sample_acquisition/Practical_considerations.doctree and b/.doctrees/02_Sample_acquisition/Practical_considerations.doctree differ
diff --git a/.doctrees/02_Sample_acquisition/Resources.doctree b/.doctrees/02_Sample_acquisition/Resources.doctree
index dfbcc642..1925b0f4 100644
Binary files a/.doctrees/02_Sample_acquisition/Resources.doctree and b/.doctrees/02_Sample_acquisition/Resources.doctree differ
diff --git a/.doctrees/03_Image_analysis/Classification.doctree b/.doctrees/03_Image_analysis/Classification.doctree
index 559d831b..9722be99 100644
Binary files a/.doctrees/03_Image_analysis/Classification.doctree and b/.doctrees/03_Image_analysis/Classification.doctree differ
diff --git a/.doctrees/03_Image_analysis/Colocalization.doctree b/.doctrees/03_Image_analysis/Colocalization.doctree
index b4af46ce..c127873a 100644
Binary files a/.doctrees/03_Image_analysis/Colocalization.doctree and b/.doctrees/03_Image_analysis/Colocalization.doctree differ
diff --git a/.doctrees/03_Image_analysis/Common_types_of_analysis.doctree b/.doctrees/03_Image_analysis/Common_types_of_analysis.doctree
index 4034c28c..bb1f8967 100644
Binary files a/.doctrees/03_Image_analysis/Common_types_of_analysis.doctree and b/.doctrees/03_Image_analysis/Common_types_of_analysis.doctree differ
diff --git a/.doctrees/03_Image_analysis/Data_management.doctree b/.doctrees/03_Image_analysis/Data_management.doctree
index 9b9e2d0d..78d32f1e 100644
Binary files a/.doctrees/03_Image_analysis/Data_management.doctree and b/.doctrees/03_Image_analysis/Data_management.doctree differ
diff --git a/.doctrees/03_Image_analysis/GeneralUseSoftware.doctree b/.doctrees/03_Image_analysis/GeneralUseSoftware.doctree
index 158dc871..6edf0113 100644
Binary files a/.doctrees/03_Image_analysis/GeneralUseSoftware.doctree and b/.doctrees/03_Image_analysis/GeneralUseSoftware.doctree differ
diff --git a/.doctrees/03_Image_analysis/Intensity.doctree b/.doctrees/03_Image_analysis/Intensity.doctree
index 47e914fd..1517108d 100644
Binary files a/.doctrees/03_Image_analysis/Intensity.doctree and b/.doctrees/03_Image_analysis/Intensity.doctree differ
diff --git a/.doctrees/03_Image_analysis/Introduction.doctree b/.doctrees/03_Image_analysis/Introduction.doctree
index 05bdbeff..5deae463 100644
Binary files a/.doctrees/03_Image_analysis/Introduction.doctree and b/.doctrees/03_Image_analysis/Introduction.doctree differ
diff --git a/.doctrees/03_Image_analysis/Resources.doctree b/.doctrees/03_Image_analysis/Resources.doctree
index 221884cc..3dfae731 100644
Binary files a/.doctrees/03_Image_analysis/Resources.doctree and b/.doctrees/03_Image_analysis/Resources.doctree differ
diff --git a/.doctrees/03_Image_analysis/Shape.doctree b/.doctrees/03_Image_analysis/Shape.doctree
index 15000dff..0acb9abf 100644
Binary files a/.doctrees/03_Image_analysis/Shape.doctree and b/.doctrees/03_Image_analysis/Shape.doctree differ
diff --git a/.doctrees/03_Image_analysis/Software.doctree b/.doctrees/03_Image_analysis/Software.doctree
index 054a6fa4..40cc7775 100644
Binary files a/.doctrees/03_Image_analysis/Software.doctree and b/.doctrees/03_Image_analysis/Software.doctree differ
diff --git a/.doctrees/03_Image_analysis/SpecificUseSoftware.doctree b/.doctrees/03_Image_analysis/SpecificUseSoftware.doctree
index a9ad60c1..ce27f1a1 100644
Binary files a/.doctrees/03_Image_analysis/SpecificUseSoftware.doctree and b/.doctrees/03_Image_analysis/SpecificUseSoftware.doctree differ
diff --git a/.doctrees/03_Image_analysis/Tracking.doctree b/.doctrees/03_Image_analysis/Tracking.doctree
index 5604df2e..447d98d9 100644
Binary files a/.doctrees/03_Image_analysis/Tracking.doctree and b/.doctrees/03_Image_analysis/Tracking.doctree differ
diff --git a/.doctrees/03_Image_analysis/_notinyet_Common_pitfalls.doctree b/.doctrees/03_Image_analysis/_notinyet_Common_pitfalls.doctree
index 3365ae6e..a73d531e 100644
Binary files a/.doctrees/03_Image_analysis/_notinyet_Common_pitfalls.doctree and b/.doctrees/03_Image_analysis/_notinyet_Common_pitfalls.doctree differ
diff --git a/.doctrees/04_Data_presentation/Presentation_images.doctree b/.doctrees/04_Data_presentation/Presentation_images.doctree
index a99de48e..85ebe2f8 100644
Binary files a/.doctrees/04_Data_presentation/Presentation_images.doctree and b/.doctrees/04_Data_presentation/Presentation_images.doctree differ
diff --git a/.doctrees/04_Data_presentation/Resources.doctree b/.doctrees/04_Data_presentation/Resources.doctree
index 60e1a481..0ce1e753 100644
Binary files a/.doctrees/04_Data_presentation/Resources.doctree and b/.doctrees/04_Data_presentation/Resources.doctree differ
diff --git a/.doctrees/04_Data_presentation/Statistics.doctree b/.doctrees/04_Data_presentation/Statistics.doctree
index b4e9c930..e185a91a 100644
Binary files a/.doctrees/04_Data_presentation/Statistics.doctree and b/.doctrees/04_Data_presentation/Statistics.doctree differ
diff --git a/.doctrees/Glossary.doctree b/.doctrees/Glossary.doctree
index abdd0529..601c7187 100644
Binary files a/.doctrees/Glossary.doctree and b/.doctrees/Glossary.doctree differ
diff --git a/.doctrees/QuantitativeBioimaging.doctree b/.doctrees/QuantitativeBioimaging.doctree
index ece7a341..2bb4e437 100644
Binary files a/.doctrees/QuantitativeBioimaging.doctree and b/.doctrees/QuantitativeBioimaging.doctree differ
diff --git a/.doctrees/community_resources.doctree b/.doctrees/community_resources.doctree
index d81a9626..7700bbd0 100644
Binary files a/.doctrees/community_resources.doctree and b/.doctrees/community_resources.doctree differ
diff --git a/.doctrees/contributors.doctree b/.doctrees/contributors.doctree
index adb756cd..4d10f92d 100644
Binary files a/.doctrees/contributors.doctree and b/.doctrees/contributors.doctree differ
diff --git a/.doctrees/environment.pickle b/.doctrees/environment.pickle
index ddb9e29e..138c3d65 100644
Binary files a/.doctrees/environment.pickle and b/.doctrees/environment.pickle differ
diff --git a/.doctrees/welcome.doctree b/.doctrees/welcome.doctree
index 7028aa53..260837da 100644
Binary files a/.doctrees/welcome.doctree and b/.doctrees/welcome.doctree differ