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Regional mom6-om2 recipe fails to load intake catalogue #475
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Hi @Rush74, I think you need membership to xp65. Note, the notebook you point out was tested with the conda analysis environment on hh5; regional-mom6 is installed in that environment. If after getting membership you still get the same error then I'd try with the hh5 env first to ensure that's also broken? (That's what I would do but I'm only suggesting this because personally I'm not familiar with python environments and conda etc and I always get confused what package is used from where.) |
The projects required to access the data in the recipes are mentioned in the cookbook's README. Do you think we need to include them in each recipe? |
Ok - it works fine with xp65. Re: list of projects required in the README. I just jumped straight into the recipe, someone shared the link with me directly. I guess it depends on how idiot proof you want to make individual recipes ;) |
OK, I'm closing this (but feel free to reopen if there is still an issue). |
Ok I have to download the mom5 tools and alter the default value of The following step fails: expt.FRE_tools(layout = (10, 10)) ## Here the tuple defines the processor layout
Running GFDL's FRE Tools. The following information is all printed by the FRE tools themselves
OUTPUT FROM MAKE SOLO MOSAIC:
CompletedProcess(args='/home/157/ahg157/repos/mom5/src/tools/make_solo_mosaic/make_solo_mosaic --num_tiles 1 --dir . --mosaic_name ocean_mosaic --tile_file hgrid.nc', returncode=126)
OUTPUT FROM QUICK MOSAIC:
CompletedProcess(args='/home/157/ahg157/repos/mom5/src/tools/make_quick_mosaic/make_quick_mosaic --input_mosaic ocean_mosaic.nc --mosaic_name grid_spec --ocean_topog bathymetry.nc', returncode=126)
OUTPUT FROM CHECK MASK:
CompletedProcess(args='/home/157/ahg157/repos/mom5/src/tools/check_mask/check_mask --grid_file ocean_mosaic.nc --ocean_topog bathymetry.nc --layout 10,10 --halo 4', returncode=126)
[/bin/sh](https://are.nci.org.au/bin/sh): [/home/157/ahg157/repos/mom5/src/tools/make_solo_mosaic/make_solo_mosaic](https://are.nci.org.au/home/157/ahg157/repos/mom5/src/tools/make_solo_mosaic/make_solo_mosaic): Permission denied
[/bin/sh](https://are.nci.org.au/bin/sh): [/home/157/ahg157/repos/mom5/src/tools/make_quick_mosaic/make_quick_mosaic](https://are.nci.org.au/home/157/ahg157/repos/mom5/src/tools/make_quick_mosaic/make_quick_mosaic): Permission denied
[/bin/sh](https://are.nci.org.au/bin/sh): [/home/157/ahg157/repos/mom5/src/tools/check_mask/check_mask](https://are.nci.org.au/home/157/ahg157/repos/mom5/src/tools/check_mask/check_mask): Permission denied because expt.toolpath_dir
PosixPath('/home/157/ahg157/repos/mom5/src/tools') I will download the mom5 tools from Although it looks like I have to build the tools as well. Are their recommendation modules/environments to build these tools on gadi? |
Btw @Rush74 the workflow design definitely has room for improvement. Any suggestions/PRs welcome!! 🙏 |
Just a heads-up, with CLEX ending, the |
Hi all.
I'm following the steps outlined in https://github.com/COSIMA/cosima-recipes/blob/main/Recipes/regional-mom6-forced-by-access-om2.ipynb
I'm using a virtual python environment built using NRI
conda/analysis3
with regional-mom6 installed on top of that via pip.The command
generates the following error.
Is this error
access-nri-intake-catalog
?The text was updated successfully, but these errors were encountered: