From 304ed5adedf479d5c48e35756cb2556e51e7251c Mon Sep 17 00:00:00 2001 From: kkmattil Date: Fri, 19 Jul 2024 09:59:24 +0300 Subject: [PATCH] Update diamond.md (#2169) * Update diamond.md Database list updated * Update diamond.md --------- Co-authored-by: Rasmus Kronberg <43936697+rkronberg@users.noreply.github.com> --- docs/apps/diamond.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/apps/diamond.md b/docs/apps/diamond.md index d1615ae5e7..7b36e8ec7b 100644 --- a/docs/apps/diamond.md +++ b/docs/apps/diamond.md @@ -49,7 +49,7 @@ After that, you can check the Diamond help with the command: diamond help ``` -CSC provides Diamond indexes for Uniprot databases (swiss) and NCBI non-redundant database (nr). Location of these databases is defined with the environment variable `$DIAMONDDB`. For example, searching hits for a set of nucleotide sequences from the SwissProt database could be done with the command: +CSC provides Diamond indexes for SwissProt (swiss), Uniprot (uniprot) and NCBI non-redundant databases (nr). Location of these databases is defined with the environment variable `$DIAMONDDB`. For example, searching hits for a set of nucleotide sequences from the SwissProt database could be done with the command: ```bash diamond blastx --query nuc.fasta -d $DIAMONDDB/swiss --out diamond_results.txt -p 4 --max-target-seqs 500