Unable to revert back to controller as strange joystick behaviour

[Bolty2034]

I recently installed mouse2joystick and vjoy so that I could play Zelda TOTK on kb + m.
It worked but I realised that it's not aa good as I thought it would be. So I uninstalled it.
Since I uninstalled it and I went back to my xbox pro controller it seems that each joy stick only works on one axes whilst doing both functions associated with both joysticks.
For example the left stick only works for up and down. When I push up it Link walk sidewards (I think) and the camera simultaneously spins counter clockwise causing link to walk in a circle.
When I push down on the left stick it does the reverse.
Pushing directly left or right does nothing.
Pushing the left stick in causes me to crouch and puty shield away. Repeating it makes me stand and pull my shield out.
For the right stick nothing happens when I push downwards but pushing and holding upwards puts my shield away and when I release I bring my shield back out.
Pushing left on the right stick makes me walk forwards and make the camera move downwards.
Pushing right on the right stick makes me do the opposite, walk backwards and moves the camera upwards.
I've changed my controller settings but when I attempt to change the left stick I am unable to select the left stick again. It doesn't seem to recognise the left stick being an option to push. When I click to change the left stick to be the left stick again by pushing around on the left joystick it selects right. I am unable to select left again.
I've deleted the controller profile and tried to start again but it does the same.
I've reinstalled mouse2joystick and vjoy in the hopes I could reverse this somehow with no luck
I've reinstalled ryujinx, mouse2joystick and vJoy with no luck.
In Ryujinx settings I am unable to set my left joystick as left joystick, I can only choose right. Even when defaulting back so it says left it still does this.