Issue after starting ClearVolume #72
Comments
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Hi Cyril, could you please give us some more details? Such as, what operating system you are using, and what graphics card, and if there's any output in the console window. Thanks! |
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Dear, Thank you very much for your reply. Thank you for your support. ' |
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Try this: get new fresh version of Fiji, install clearvolume but do not install anything else in particular the 3D viewer (incompatibility of the jogl libraries could be a culprit)
…Sent from my iPhone
On Jul 27, 2018, at 16:27, BdCyril ***@***.***> wrote:
Dear,
Thank you very much for your reply.
I am using Windows 10, Processor I7, 3.40 GHz, 32 GB RAM, 64 bits. For the Graphic card it is Nvidia NVS 310. Yes once I run ClearVolume, I got the message reported below.
Thank you for your support.
Kind regards,
Cyril
'
ClearGLWindow: GLProfile[GL4bc/GL4bc.hw]
1.0
1.0
1.0
WindowsException in thread "SciJava-392a04e7-Thread-5-FPSAWTAnimator#01-Timer1" com.jogamp.opengl.util.AnimatorBase$UncaughtAnimatorException: com.jogamp.opengl.GLException: Caught NoClassDefFoundError: Could not initialize class clearcl.backend.jocl.ClearCLBackendJOCL on thread SciJava-392a04e7-Thread-5-FPSAWTAnimator#01-Timer1
at com.jogamp.opengl.util.AWTAnimatorImpl.display(AWTAnimatorImpl.java:92)
at com.jogamp.opengl.util.AnimatorBase.display(AnimatorBase.java:452)
at com.jogamp.opengl.util.FPSAnimator$MainTask.run(FPSAnimator.java:178)
at java.util.TimerThread.mainLoop(Timer.java:555)
at java.util.TimerThread.run(Timer.java:505)
Caused by: com.jogamp.opengl.GLException: Caught NoClassDefFoundError: Could not initialize class clearcl.backend.jocl.ClearCLBackendJOCL on thread SciJava-392a04e7-Thread-5-FPSAWTAnimator#01-Timer1
at com.jogamp.opengl.GLException.newGLException(GLException.java:76)
at jogamp.opengl.GLDrawableHelper.invokeGLImpl(GLDrawableHelper.java:1327)
at jogamp.opengl.GLDrawableHelper.invokeGL(GLDrawableHelper.java:1147)
at com.jogamp.newt.opengl.GLWindow.display(GLWindow.java:759)
at com.jogamp.opengl.util.AWTAnimatorImpl.display(AWTAnimatorImpl.java:81)
... 4 more
Caused by: java.lang.NoClassDefFoundError: Could not initialize class clearcl.backend.jocl.ClearCLBackendJOCL
at clearcl.backend.ClearCLBackends.getBackendList(ClearCLBackends.java:30)
at clearcl.backend.ClearCLBackends.getFunctionalBackend(ClearCLBackends.java:65)
at clearcl.backend.ClearCLBackends.getBestBackend(ClearCLBackends.java:99)
at clearvolume.renderer.opencl.OpenCLDevice.initCL(OpenCLDevice.java:48)
at clearvolume.renderer.opencl.OpenCLVolumeRenderer.initVolumeRenderer(OpenCLVolumeRenderer.java:130)
at clearvolume.renderer.cleargl.ClearGLVolumeRenderer.init(ClearGLVolumeRenderer.java:818)
at jogamp.opengl.GLDrawableHelper.init(GLDrawableHelper.java:644)
at jogamp.opengl.GLDrawableHelper.init(GLDrawableHelper.java:667)
at jogamp.opengl.GLAutoDrawableBase$1.run(GLAutoDrawableBase.java:431)
at jogamp.opengl.GLDrawableHelper.invokeGLImpl(GLDrawableHelper.java:1291)
... 7 more
java.lang.NullPointerException
at cleargl.GLTexture.(GLTexture.java:141)
at clearvolume.renderer.cleargl.ClearGLVolumeRenderer.ensureTextureAllocated(ClearGLVolumeRenderer.java:630)
at clearvolume.renderer.cleargl.ClearGLVolumeRenderer.displayInternal(ClearGLVolumeRenderer.java:508)
at clearvolume.renderer.cleargl.ClearGLVolumeRenderer.display(ClearGLVolumeRenderer.java:490)
at jogamp.opengl.GLDrawableHelper.displayImpl(GLDrawableHelper.java:692)
at jogamp.opengl.GLDrawableHelper.display(GLDrawableHelper.java:674)
at jogamp.opengl.GLAutoDrawableBase$2.run(GLAutoDrawableBase.java:443)
at jogamp.opengl.GLDrawableHelper.invokeGLImpl(GLDrawableHelper.java:1293)
at jogamp.opengl.GLDrawableHelper.invokeGL(GLDrawableHelper.java:1147)
at com.jogamp.newt.opengl.GLWindow.display(GLWindow.java:759)
at jogamp.opengl.GLAutoDrawableBase.defaultWindowRepaintOp(GLAutoDrawableBase.java:215)
at com.jogamp.newt.opengl.GLWindow.access$100(GLWindow.java:119)
at com.jogamp.newt.opengl.GLWindow$2.windowRepaint(GLWindow.java:136)
at jogamp.newt.WindowImpl.consumeWindowEvent(WindowImpl.java:4401)
at jogamp.newt.WindowImpl.consumeEvent(WindowImpl.java:3372)
at jogamp.newt.WindowImpl.doEvent(WindowImpl.java:3318)
at jogamp.newt.WindowImpl.windowRepaint(WindowImpl.java:4715)
at jogamp.newt.driver.windows.DisplayDriver.DispatchMessages0(Native Method)
at jogamp.newt.driver.windows.DisplayDriver.dispatchMessagesNative(DisplayDriver.java:124)
at jogamp.newt.DisplayImpl.dispatchMessages(DisplayImpl.java:753)
at jogamp.newt.DisplayImpl$7.run(DisplayImpl.java:672)
at jogamp.newt.DefaultEDTUtil$NEDT.run(DefaultEDTUtil.java:347)
java.lang.NullPointerException
at clearvolume.renderer.cleargl.ClearGLVolumeRenderer.displayInternal(ClearGLVolumeRenderer.java:571)
at clearvolume.renderer.cleargl.ClearGLVolumeRenderer.display(ClearGLVolumeRenderer.java:490)
at jogamp.opengl.GLDrawableHelper.displayImpl(GLDrawableHelper.java:692)
at jogamp.opengl.GLDrawableHelper.display(GLDrawableHelper.java:674)
at jogamp.opengl.GLAutoDrawableBase$2.run(GLAutoDrawableBase.java:443)
at jogamp.opengl.GLDrawableHelper.invokeGLImpl(GLDrawableHelper.java:1293)
at jogamp.opengl.GLDrawableHelper.invokeGL(GLDrawableHelper.java:1147)
at com.jogamp.newt.opengl.GLWindow.display(GLWindow.java:759)
at jogamp.opengl.GLAutoDrawableBase.defaultWindowRepaintOp(GLAutoDrawableBase.java:215)
at com.jogamp.newt.opengl.GLWindow.access$100(GLWindow.java:119)
at com.jogamp.newt.opengl.GLWindow$2.windowRepaint(GLWindow.java:136)
at jogamp.newt.WindowImpl.consumeWindowEvent(WindowImpl.java:4401)
at jogamp.newt.WindowImpl.consumeEvent(WindowImpl.java:3372)
at jogamp.newt.WindowImpl.doEvent(WindowImpl.java:3318)
at jogamp.newt.WindowImpl.windowRepaint(WindowImpl.java:4715)
at jogamp.newt.WindowImpl.windowRepaint(WindowImpl.java:4694)
at com.jogamp.newt.opengl.GLWindow.windowRepaint(GLWindow.java:810)
at com.jogamp.newt.awt.NewtCanvasAWT.paint(NewtCanvasAWT.java:732)
at sun.awt.RepaintArea.paintComponent(RepaintArea.java:264)
at sun.awt.RepaintArea.paint(RepaintArea.java:240)
at sun.awt.windows.WComponentPeer.handleEvent(WComponentPeer.java:358)
at java.awt.Component.dispatchEventImpl(Component.java:4965)
at java.awt.Component.dispatchEvent(Component.java:4711)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84)
at java.awt.EventQueue$4.run(EventQueue.java:733)
at java.awt.EventQueue$4.run(EventQueue.java:731)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:730)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
java.lang.NullPointerException
at clearvolume.renderer.cleargl.ClearGLVolumeRenderer.displayInternal(ClearGLVolumeRenderer.java:571)
at clearvolume.renderer.cleargl.ClearGLVolumeRenderer.display(ClearGLVolumeRenderer.java:490)
at jogamp.opengl.GLDrawableHelper.displayImpl(GLDrawableHelper.java:692)
at jogamp.opengl.GLDrawableHelper.display(GLDrawableHelper.java:674)
at jogamp.opengl.GLAutoDrawableBase$2.run(GLAutoDrawableBase.java:443)
at jogamp.opengl.GLDrawableHelper.invokeGLImpl(GLDrawableHelper.java:1293)
at jogamp.opengl.GLDrawableHelper.invokeGL(GLDrawableHelper.java:1147)
at com.jogamp.newt.opengl.GLWindow.display(GLWindow.java:759)
at jogamp.opengl.GLAutoDrawableBase.defaultWindowRepaintOp(GLAutoDrawableBase.java:215)
at com.jogamp.newt.opengl.GLWindow.access$100(GLWindow.java:119)
at com.jogamp.newt.opengl.GLWindow$2.windowRepaint(GLWindow.java:136)
at jogamp.newt.WindowImpl.consumeWindowEvent(WindowImpl.java:4401)
at jogamp.newt.WindowImpl.consumeEvent(WindowImpl.java:3372)
at jogamp.newt.WindowImpl.doEvent(WindowImpl.java:3318)
at jogamp.newt.WindowImpl.windowRepaint(WindowImpl.java:4715)
at jogamp.newt.WindowImpl.windowRepaint(WindowImpl.java:4694)
at com.jogamp.newt.opengl.GLWindow.windowRepaint(GLWindow.java:810)
at com.jogamp.newt.awt.NewtCanvasAWT.paint(NewtCanvasAWT.java:732)
at sun.awt.RepaintArea.paintComponent(RepaintArea.java:264)
at sun.awt.RepaintArea.paint(RepaintArea.java:240)
at sun.awt.windows.WComponentPeer.handleEvent(WComponentPeer.java:358)
at java.awt.Component.dispatchEventImpl(Component.java:4965)
at java.awt.Component.dispatchEvent(Component.java:4711)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84)
at java.awt.EventQueue$4.run(EventQueue.java:733)
at java.awt.EventQueue$4.run(EventQueue.java:731)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:730)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
'
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Dear, Thank you for the answer. I tried to install Fiji as you advised, ClearVolume and I removed 3D viewer plugin, but I still have the same issue. Thank you for your support. null |
Dear,
I installed ClearVolume using the uptades from Fiji. After importing the 8-bits Tiff images as a sequence, once I loaded ClearVolume, I saw the software which started but no image. I got 3D viewer and Java8 installed.
Thank you for your support.
Kind regards,
Cyril
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