diff --git a/docs/Manifest.toml b/docs/Manifest.toml index f40590be21f..d03becd3638 100644 --- a/docs/Manifest.toml +++ b/docs/Manifest.toml @@ -5,21 +5,15 @@ manifest_format = "2.0" project_hash = "64afcb8dacf7a673d0068ba1a72602801e8d529a" [[deps.ADTypes]] -git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.2.0" +version = "1.2.1" weakdeps = ["ChainRulesCore", "EnzymeCore"] [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" ADTypesEnzymeCoreExt = "EnzymeCore" -[[deps.AMD]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] -git-tree-sha1 = "45a1272e3f809d36431e57ab22703c6896b8908f" -uuid = "14f7f29c-3bd6-536c-9a0b-7339e30b5a3e" -version = "0.5.3" - [[deps.ANSIColoredPrinters]] git-tree-sha1 = "574baf8110975760d391c710b6341da1afa48d8c" uuid = "a4c015fc-c6ff-483c-b24f-f7ea428134e9" @@ -73,10 +67,10 @@ weakdeps = ["StaticArrays"] AdaptStaticArraysExt = "StaticArrays" [[deps.AliasTables]] -deps = ["Random"] -git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" -version = "1.1.2" +version = "1.1.3" [[deps.Animations]] deps = ["Colors"] @@ -124,9 +118,9 @@ version = "7.10.0" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "33207a8be6267bc389d0701e97a9bce6a4de68eb" +git-tree-sha1 = "29649b61e0313db0a7ad5ecf41210e4e85aea234" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.9.2" +version = "1.9.3" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -265,13 +259,14 @@ version = "1.0.1+0" [[deps.CUDA]] deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LLVMLoopInfo", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "StaticArrays", "Statistics"] -git-tree-sha1 = "4e33522a036b39fc6f5cb7447ae3b28eb8fbe99b" +git-tree-sha1 = "fe61a257e94621e25471071ca58d29ea45eef13b" uuid = "052768ef-5323-5732-b1bb-66c8b64840ba" -version = "5.3.3" -weakdeps = ["ChainRulesCore", "SpecialFunctions"] +version = "5.3.4" +weakdeps = ["ChainRulesCore", "EnzymeCore", "SpecialFunctions"] [deps.CUDA.extensions] ChainRulesCoreExt = "ChainRulesCore" + EnzymeCoreExt = "EnzymeCore" SpecialFunctionsExt = "SpecialFunctions" [[deps.CUDA_Driver_jll]] @@ -300,15 +295,15 @@ version = "1.0.5" [[deps.CairoMakie]] deps = ["CRC32c", "Cairo", "Colors", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"] -git-tree-sha1 = "d69c7593fe9d7d617973adcbe4762028c6899b2c" +git-tree-sha1 = "9e8eaaff3e5951d8c61b7c9261d935eb27e0304b" uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" -version = "0.11.11" +version = "0.12.2" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a4c43f59baa34011e303e76f5c8c91bf58415aaf" +git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.0+1" +version = "1.18.0+2" [[deps.Calculus]] deps = ["LinearAlgebra"] @@ -340,9 +335,9 @@ version = "0.5.8" [[deps.ClimaCore]] deps = ["Adapt", "BandedMatrices", "BlockArrays", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "MultiBroadcastFusion", "NVTX", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "Unrolled"] -git-tree-sha1 = "c08d308f80d92edd128c4498e105e890e3982ead" +git-tree-sha1 = "684a90d619335c8160cb0cfae7c602701649e4e9" uuid = "d414da3d-4745-48bb-8d80-42e94e092884" -version = "0.14.4" +version = "0.14.5" weakdeps = ["CUDA", "Krylov"] [deps.ClimaCore.extensions] @@ -357,15 +352,15 @@ version = "0.1.7" [[deps.ClimaParams]] deps = ["DocStringExtensions", "TOML", "Test"] -git-tree-sha1 = "5f4254495beb54be2d97c15b9c220e603674daf9" +git-tree-sha1 = "8da1dc4aa297847cf74c51168cab1995e5631eeb" uuid = "5c42b081-d73a-476f-9059-fd94b934656c" -version = "0.10.6" +version = "0.10.7" [[deps.ClimaTimeSteppers]] deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "bd0445edef423f0f274b574148481db48f8554a9" +git-tree-sha1 = "bf1a1044b75ccea2a4eeaa48bab4f77d8f9286a9" uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" -version = "0.7.26" +version = "0.7.30" [deps.ClimaTimeSteppers.extensions] ClimaTimeSteppersBenchmarkToolsExt = ["CUDA", "BenchmarkTools", "OrderedCollections", "StatsBase", "PrettyTables"] @@ -586,11 +581,12 @@ version = "0.1.0+0" [[deps.DiffEqBase]] deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "c8b0bdee28a1addddb7ab939365fe6543d7d2d0d" +git-tree-sha1 = "03b9555f4c3a7c2f530bb1ae13e85719c632f74e" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.149.2" +version = "6.151.1" [deps.DiffEqBase.extensions] + DiffEqBaseCUDAExt = "CUDA" DiffEqBaseChainRulesCoreExt = "ChainRulesCore" DiffEqBaseDistributionsExt = "Distributions" DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] @@ -603,6 +599,7 @@ version = "6.149.2" DiffEqBaseUnitfulExt = "Unitful" [deps.DiffEqBase.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" @@ -879,9 +876,9 @@ version = "4.1.1" [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.13.2+0" [[deps.FreeTypeAbstraction]] deps = ["ColorVectorSpace", "Colors", "FreeType", "GeometryBasics"] @@ -923,9 +920,9 @@ version = "6.2.1+6" [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "68e8ff56a4a355a85d2784b94614491f8c900cde" +git-tree-sha1 = "38cb19b8a3e600e509dc36a6396ac74266d108c1" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "10.1.0" +version = "10.1.1" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -1006,9 +1003,9 @@ version = "1.3.14+0" [[deps.GridLayoutBase]] deps = ["GeometryBasics", "InteractiveUtils", "Observables"] -git-tree-sha1 = "6f93a83ca11346771a93bbde2bdad2f65b61498f" +git-tree-sha1 = "fc713f007cff99ff9e50accba6373624ddd33588" uuid = "3955a311-db13-416c-9275-1d80ed98e5e9" -version = "0.10.2" +version = "0.11.0" [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" @@ -1137,13 +1134,11 @@ deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArr git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" version = "0.15.1" +weakdeps = ["Unitful"] [deps.Interpolations.extensions] InterpolationsUnitfulExt = "Unitful" - [deps.Interpolations.weakdeps] - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - [[deps.IntervalArithmetic]] deps = ["CRlibm", "FastRounding", "LinearAlgebra", "Markdown", "Random", "RecipesBase", "RoundingEmulator", "SetRounding", "StaticArrays"] git-tree-sha1 = "5ab7744289be503d76a944784bac3f2df7b809af" @@ -1279,12 +1274,6 @@ git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" version = "3.100.2+0" -[[deps.LDLFactorizations]] -deps = ["AMD", "LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "70f582b446a1c3ad82cf87e62b878668beef9d13" -uuid = "40e66cde-538c-5869-a4ad-c39174c6795b" -version = "0.10.1" - [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" @@ -1426,14 +1415,20 @@ deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearOperators]] -deps = ["FastClosures", "LDLFactorizations", "LinearAlgebra", "Printf", "Requires", "SparseArrays", "TimerOutputs"] -git-tree-sha1 = "f06df3a46255879cbccae1b5b6dcb16994c31be7" +deps = ["FastClosures", "LinearAlgebra", "Printf", "Requires", "SparseArrays", "TimerOutputs"] +git-tree-sha1 = "ae5d90280094348c32fda8bc8b5a88bb16514d43" uuid = "5c8ed15e-5a4c-59e4-a42b-c7e8811fb125" -version = "2.7.0" -weakdeps = ["ChainRulesCore"] +version = "2.8.0" [deps.LinearOperators.extensions] + LinearOperatorsCUDAExt = "CUDA" LinearOperatorsChainRulesCoreExt = "ChainRulesCore" + LinearOperatorsLDLFactorizationsExt = "LDLFactorizations" + + [deps.LinearOperators.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + LDLFactorizations = "40e66cde-538c-5869-a4ad-c39174c6795b" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] @@ -1505,16 +1500,16 @@ uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.13" [[deps.Makie]] -deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun"] -git-tree-sha1 = "4d49c9ee830eec99d3e8de2425ff433ece7cc1bc" +deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "Dates", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun", "Unitful"] +git-tree-sha1 = "ec3a60c9de787bc6ef119d13e07d4bfacceebb83" uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" -version = "0.20.10" +version = "0.21.2" [[deps.MakieCore]] -deps = ["Observables", "REPL"] -git-tree-sha1 = "248b7a4be0f92b497f7a331aed02c1e9a878f46b" +deps = ["ColorTypes", "GeometryBasics", "IntervalSets", "Observables"] +git-tree-sha1 = "c1c9da1a69f6c635a60581c98da252958c844d70" uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b" -version = "0.7.3" +version = "0.8.2" [[deps.ManualMemory]] git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" @@ -1538,9 +1533,9 @@ version = "0.1.2" [[deps.MathTeXEngine]] deps = ["AbstractTrees", "Automa", "DataStructures", "FreeTypeAbstraction", "GeometryBasics", "LaTeXStrings", "REPL", "RelocatableFolders", "UnicodeFun"] -git-tree-sha1 = "96ca8a313eb6437db5ffe946c457a401bbb8ce1d" +git-tree-sha1 = "1865d0b8a2d91477c8b16b49152a32764c7b1f5f" uuid = "0a4f8689-d25c-4efe-a92b-7142dfc1aa53" -version = "0.5.7" +version = "0.6.0" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -1860,6 +1855,11 @@ git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" version = "1.10.0" +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + [[deps.QOI]] deps = ["ColorTypes", "FileIO", "FixedPointNumbers"] git-tree-sha1 = "18e8f4d1426e965c7b532ddd260599e1510d26ce" @@ -1878,9 +1878,9 @@ uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.RRTMGP]] deps = ["Adapt", "Artifacts", "CUDA", "ClimaComms", "DocStringExtensions", "GaussQuadrature", "Random", "StaticArrays"] -git-tree-sha1 = "4befbe654262330dc7dace3b8841da3dce5b4f91" +git-tree-sha1 = "43dba55be8b80a2af4b4e901537d9f29fcd0d2e2" uuid = "a01a1ee8-cea4-48fc-987c-fc7878d79da1" -version = "0.13.2" +version = "0.13.4" weakdeps = ["ClimaParams"] [deps.RRTMGP.extensions] @@ -1925,9 +1925,9 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "f599a896fb28043dd63a4d372231dfcbdd117394" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.16.0" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1977,10 +1977,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.RootSolvers]] deps = ["ForwardDiff"] @@ -2016,9 +2016,9 @@ version = "0.1.0" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "397367599b9526a49cc06a4db70835807498b561" +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.36.1" +version = "2.38.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2058,9 +2058,9 @@ version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "363c4e82b66be7b9f7c7c7da7478fdae07de44b9" +git-tree-sha1 = "90b4f68892337554d31cdcdbe19e48989f26c7e6" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.2" +version = "1.4.3" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -2159,9 +2159,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -2334,9 +2334,9 @@ version = "0.10.0" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] -git-tree-sha1 = "f548a9e9c490030e545f72074a41edfd0e5bcdd7" +git-tree-sha1 = "5a13ae8a41237cff5ecf34f73eb1b8f42fff6531" uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" -version = "0.5.23" +version = "0.5.24" [[deps.TranscodingStreams]] git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156" @@ -2386,6 +2386,17 @@ git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" version = "0.4.1" +[[deps.Unitful]] +deps = ["Dates", "LinearAlgebra", "Random"] +git-tree-sha1 = "dd260903fdabea27d9b6021689b3cd5401a57748" +uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" +version = "1.20.0" +weakdeps = ["ConstructionBase", "InverseFunctions"] + + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + [[deps.Unrolled]] deps = ["MacroTools"] git-tree-sha1 = "6cc9d682755680e0f0be87c56392b7651efc2c7b" @@ -2399,9 +2410,9 @@ version = "0.2.1" [[deps.UnsafeAtomicsLLVM]] deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +git-tree-sha1 = "d9f5962fecd5ccece07db1ff006fb0b5271bdfdd" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" +version = "0.1.4" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] @@ -2411,9 +2422,9 @@ version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.6+0" +version = "2.12.7+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -2505,10 +2516,10 @@ uuid = "477f73a3-ac25-53e9-8cc3-50b2fa2566f0" version = "1.1.2+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.9.0+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] diff --git a/examples/Manifest.toml b/examples/Manifest.toml index 150f88f8c8c..54e68cdcd5a 100644 --- a/examples/Manifest.toml +++ b/examples/Manifest.toml @@ -5,21 +5,15 @@ manifest_format = "2.0" project_hash = "ee43add35e84bb5015e880c7d711d4c69c8fcaf2" [[deps.ADTypes]] -git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.2.0" +version = "1.2.1" weakdeps = ["ChainRulesCore", "EnzymeCore"] [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" ADTypesEnzymeCoreExt = "EnzymeCore" -[[deps.AMD]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] -git-tree-sha1 = "45a1272e3f809d36431e57ab22703c6896b8908f" -uuid = "14f7f29c-3bd6-536c-9a0b-7339e30b5a3e" -version = "0.5.3" - [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" @@ -68,10 +62,10 @@ weakdeps = ["StaticArrays"] AdaptStaticArraysExt = "StaticArrays" [[deps.AliasTables]] -deps = ["Random"] -git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" -version = "1.1.2" +version = "1.1.3" [[deps.Animations]] deps = ["Colors"] @@ -119,9 +113,9 @@ version = "7.10.0" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "33207a8be6267bc389d0701e97a9bce6a4de68eb" +git-tree-sha1 = "29649b61e0313db0a7ad5ecf41210e4e85aea234" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.9.2" +version = "1.9.3" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -243,13 +237,14 @@ version = "1.0.1+0" [[deps.CUDA]] deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LLVMLoopInfo", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "StaticArrays", "Statistics"] -git-tree-sha1 = "4e33522a036b39fc6f5cb7447ae3b28eb8fbe99b" +git-tree-sha1 = "fe61a257e94621e25471071ca58d29ea45eef13b" uuid = "052768ef-5323-5732-b1bb-66c8b64840ba" -version = "5.3.3" -weakdeps = ["ChainRulesCore", "SpecialFunctions"] +version = "5.3.4" +weakdeps = ["ChainRulesCore", "EnzymeCore", "SpecialFunctions"] [deps.CUDA.extensions] ChainRulesCoreExt = "ChainRulesCore" + EnzymeCoreExt = "EnzymeCore" SpecialFunctionsExt = "SpecialFunctions" [[deps.CUDA_Driver_jll]] @@ -284,9 +279,9 @@ version = "0.11.11" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a4c43f59baa34011e303e76f5c8c91bf58415aaf" +git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.0+1" +version = "1.18.0+2" [[deps.Calculus]] deps = ["LinearAlgebra"] @@ -306,9 +301,9 @@ weakdeps = ["SparseArrays"] [[deps.ClimaAnalysis]] deps = ["NCDatasets", "OrderedCollections", "Statistics"] -git-tree-sha1 = "1cc42fc6f284dd721051aca33efdba8676ab2617" +git-tree-sha1 = "af5e012e13bc9609f712dea0434cb4ce2b3e709e" uuid = "29b5916a-a76c-4e73-9657-3c8fd22e65e6" -version = "0.5.1" +version = "0.5.2" [deps.ClimaAnalysis.extensions] CairoMakieExt = "CairoMakie" @@ -332,9 +327,9 @@ version = "0.5.8" [[deps.ClimaCore]] deps = ["Adapt", "BandedMatrices", "BlockArrays", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "MultiBroadcastFusion", "NVTX", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "Unrolled"] -git-tree-sha1 = "c08d308f80d92edd128c4498e105e890e3982ead" +git-tree-sha1 = "684a90d619335c8160cb0cfae7c602701649e4e9" uuid = "d414da3d-4745-48bb-8d80-42e94e092884" -version = "0.14.4" +version = "0.14.5" weakdeps = ["CUDA", "Krylov"] [deps.ClimaCore.extensions] @@ -379,15 +374,15 @@ version = "0.1.7" [[deps.ClimaParams]] deps = ["DocStringExtensions", "TOML", "Test"] -git-tree-sha1 = "5f4254495beb54be2d97c15b9c220e603674daf9" +git-tree-sha1 = "8da1dc4aa297847cf74c51168cab1995e5631eeb" uuid = "5c42b081-d73a-476f-9059-fd94b934656c" -version = "0.10.6" +version = "0.10.7" [[deps.ClimaTimeSteppers]] deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "bd0445edef423f0f274b574148481db48f8554a9" +git-tree-sha1 = "bf1a1044b75ccea2a4eeaa48bab4f77d8f9286a9" uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" -version = "0.7.26" +version = "0.7.30" [deps.ClimaTimeSteppers.extensions] ClimaTimeSteppersBenchmarkToolsExt = ["CUDA", "BenchmarkTools", "OrderedCollections", "StatsBase", "PrettyTables"] @@ -606,11 +601,12 @@ version = "0.1.0+0" [[deps.DiffEqBase]] deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "c8b0bdee28a1addddb7ab939365fe6543d7d2d0d" +git-tree-sha1 = "03b9555f4c3a7c2f530bb1ae13e85719c632f74e" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.149.2" +version = "6.151.1" [deps.DiffEqBase.extensions] + DiffEqBaseCUDAExt = "CUDA" DiffEqBaseChainRulesCoreExt = "ChainRulesCore" DiffEqBaseDistributionsExt = "Distributions" DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] @@ -623,6 +619,7 @@ version = "6.149.2" DiffEqBaseUnitfulExt = "Unitful" [deps.DiffEqBase.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" @@ -887,9 +884,9 @@ version = "4.1.1" [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.13.2+0" [[deps.FreeTypeAbstraction]] deps = ["ColorVectorSpace", "Colors", "FreeType", "GeometryBasics"] @@ -931,9 +928,9 @@ version = "6.2.1+6" [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "68e8ff56a4a355a85d2784b94614491f8c900cde" +git-tree-sha1 = "38cb19b8a3e600e509dc36a6396ac74266d108c1" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "10.1.0" +version = "10.1.1" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -1199,10 +1196,10 @@ uuid = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" version = "0.8.29" [[deps.JLD2]] -deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"] -git-tree-sha1 = "dca9ff5abdf5fab4456876bc93f80c59a37b81df" +deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Reexport", "Requires", "TranscodingStreams", "UUIDs", "Unicode"] +git-tree-sha1 = "bdbe8222d2f5703ad6a7019277d149ec6d78c301" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.4.47" +version = "0.4.48" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -1274,12 +1271,6 @@ git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" version = "3.100.2+0" -[[deps.LDLFactorizations]] -deps = ["AMD", "LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "70f582b446a1c3ad82cf87e62b878668beef9d13" -uuid = "40e66cde-538c-5869-a4ad-c39174c6795b" -version = "0.10.1" - [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" @@ -1434,14 +1425,20 @@ deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearOperators]] -deps = ["FastClosures", "LDLFactorizations", "LinearAlgebra", "Printf", "Requires", "SparseArrays", "TimerOutputs"] -git-tree-sha1 = "f06df3a46255879cbccae1b5b6dcb16994c31be7" +deps = ["FastClosures", "LinearAlgebra", "Printf", "Requires", "SparseArrays", "TimerOutputs"] +git-tree-sha1 = "ae5d90280094348c32fda8bc8b5a88bb16514d43" uuid = "5c8ed15e-5a4c-59e4-a42b-c7e8811fb125" -version = "2.7.0" -weakdeps = ["ChainRulesCore"] +version = "2.8.0" [deps.LinearOperators.extensions] + LinearOperatorsCUDAExt = "CUDA" LinearOperatorsChainRulesCoreExt = "ChainRulesCore" + LinearOperatorsLDLFactorizationsExt = "LDLFactorizations" + + [deps.LinearOperators.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + LDLFactorizations = "40e66cde-538c-5869-a4ad-c39174c6795b" [[deps.LittleCMS_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll"] @@ -1914,6 +1911,11 @@ git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" version = "1.10.0" +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + [[deps.QOI]] deps = ["ColorTypes", "FileIO", "FixedPointNumbers"] git-tree-sha1 = "18e8f4d1426e965c7b532ddd260599e1510d26ce" @@ -1932,9 +1934,9 @@ uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.RRTMGP]] deps = ["Adapt", "Artifacts", "CUDA", "ClimaComms", "DocStringExtensions", "GaussQuadrature", "Random", "StaticArrays"] -git-tree-sha1 = "4befbe654262330dc7dace3b8841da3dce5b4f91" +git-tree-sha1 = "43dba55be8b80a2af4b4e901537d9f29fcd0d2e2" uuid = "a01a1ee8-cea4-48fc-987c-fc7878d79da1" -version = "0.13.2" +version = "0.13.4" weakdeps = ["ClimaParams"] [deps.RRTMGP.extensions] @@ -1979,9 +1981,9 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "f599a896fb28043dd63a4d372231dfcbdd117394" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.16.0" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -2031,10 +2033,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.RootSolvers]] deps = ["ForwardDiff"] @@ -2070,9 +2072,9 @@ version = "0.1.0" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "397367599b9526a49cc06a4db70835807498b561" +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.36.1" +version = "2.38.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2112,9 +2114,9 @@ version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "363c4e82b66be7b9f7c7c7da7478fdae07de44b9" +git-tree-sha1 = "90b4f68892337554d31cdcdbe19e48989f26c7e6" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.2" +version = "1.4.3" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -2213,9 +2215,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -2388,9 +2390,9 @@ version = "0.10.0" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] -git-tree-sha1 = "f548a9e9c490030e545f72074a41edfd0e5bcdd7" +git-tree-sha1 = "5a13ae8a41237cff5ecf34f73eb1b8f42fff6531" uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" -version = "0.5.23" +version = "0.5.24" [[deps.TranscodingStreams]] git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156" @@ -2448,9 +2450,9 @@ version = "0.2.1" [[deps.UnsafeAtomicsLLVM]] deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +git-tree-sha1 = "d9f5962fecd5ccece07db1ff006fb0b5271bdfdd" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" +version = "0.1.4" [[deps.VTKBase]] git-tree-sha1 = "c2d0db3ef09f1942d08ea455a9e252594be5f3b6" @@ -2471,9 +2473,9 @@ version = "1.19.1" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.6+0" +version = "2.12.7+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -2565,10 +2567,10 @@ uuid = "477f73a3-ac25-53e9-8cc3-50b2fa2566f0" version = "1.1.2+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.9.0+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] diff --git a/perf/Manifest.toml b/perf/Manifest.toml index ac6e10c054a..4868623e050 100644 --- a/perf/Manifest.toml +++ b/perf/Manifest.toml @@ -5,21 +5,15 @@ manifest_format = "2.0" project_hash = "2bf1d69b1831c778fe68ae83f5feb3bf06c21d08" [[deps.ADTypes]] -git-tree-sha1 = "9b3993053b87311e699ac9e1bcabec5ae7444f65" +git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.2.0" +version = "1.2.1" weakdeps = ["ChainRulesCore", "EnzymeCore"] [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" ADTypesEnzymeCoreExt = "EnzymeCore" -[[deps.AMD]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] -git-tree-sha1 = "45a1272e3f809d36431e57ab22703c6896b8908f" -uuid = "14f7f29c-3bd6-536c-9a0b-7339e30b5a3e" -version = "0.5.3" - [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" @@ -68,10 +62,10 @@ weakdeps = ["StaticArrays"] AdaptStaticArraysExt = "StaticArrays" [[deps.AliasTables]] -deps = ["Random"] -git-tree-sha1 = "82b912bb5215792fd33df26f407d064d3602af98" +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" -version = "1.1.2" +version = "1.1.3" [[deps.Animations]] deps = ["Colors"] @@ -119,9 +113,9 @@ version = "7.10.0" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "33207a8be6267bc389d0701e97a9bce6a4de68eb" +git-tree-sha1 = "29649b61e0313db0a7ad5ecf41210e4e85aea234" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.9.2" +version = "1.9.3" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -254,13 +248,14 @@ version = "1.0.1+0" [[deps.CUDA]] deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LLVMLoopInfo", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "StaticArrays", "Statistics"] -git-tree-sha1 = "4e33522a036b39fc6f5cb7447ae3b28eb8fbe99b" +git-tree-sha1 = "fe61a257e94621e25471071ca58d29ea45eef13b" uuid = "052768ef-5323-5732-b1bb-66c8b64840ba" -version = "5.3.3" -weakdeps = ["ChainRulesCore", "SpecialFunctions"] +version = "5.3.4" +weakdeps = ["ChainRulesCore", "EnzymeCore", "SpecialFunctions"] [deps.CUDA.extensions] ChainRulesCoreExt = "ChainRulesCore" + EnzymeCoreExt = "EnzymeCore" SpecialFunctionsExt = "SpecialFunctions" [[deps.CUDA_Driver_jll]] @@ -295,9 +290,9 @@ version = "0.11.11" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a4c43f59baa34011e303e76f5c8c91bf58415aaf" +git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.0+1" +version = "1.18.0+2" [[deps.Calculus]] deps = ["LinearAlgebra"] @@ -317,9 +312,9 @@ weakdeps = ["SparseArrays"] [[deps.ClimaAnalysis]] deps = ["NCDatasets", "OrderedCollections", "Statistics"] -git-tree-sha1 = "1cc42fc6f284dd721051aca33efdba8676ab2617" +git-tree-sha1 = "af5e012e13bc9609f712dea0434cb4ce2b3e709e" uuid = "29b5916a-a76c-4e73-9657-3c8fd22e65e6" -version = "0.5.1" +version = "0.5.2" [deps.ClimaAnalysis.extensions] CairoMakieExt = "CairoMakie" @@ -343,9 +338,9 @@ version = "0.5.8" [[deps.ClimaCore]] deps = ["Adapt", "BandedMatrices", "BlockArrays", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "MultiBroadcastFusion", "NVTX", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "Unrolled"] -git-tree-sha1 = "c08d308f80d92edd128c4498e105e890e3982ead" +git-tree-sha1 = "684a90d619335c8160cb0cfae7c602701649e4e9" uuid = "d414da3d-4745-48bb-8d80-42e94e092884" -version = "0.14.4" +version = "0.14.5" weakdeps = ["CUDA", "Krylov"] [deps.ClimaCore.extensions] @@ -390,15 +385,15 @@ version = "0.1.7" [[deps.ClimaParams]] deps = ["DocStringExtensions", "TOML", "Test"] -git-tree-sha1 = "5f4254495beb54be2d97c15b9c220e603674daf9" +git-tree-sha1 = "8da1dc4aa297847cf74c51168cab1995e5631eeb" uuid = "5c42b081-d73a-476f-9059-fd94b934656c" -version = "0.10.6" +version = "0.10.7" [[deps.ClimaTimeSteppers]] deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "bd0445edef423f0f274b574148481db48f8554a9" +git-tree-sha1 = "bf1a1044b75ccea2a4eeaa48bab4f77d8f9286a9" uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" -version = "0.7.26" +version = "0.7.30" weakdeps = ["BenchmarkTools", "CUDA", "OrderedCollections", "PrettyTables", "StatsBase"] [deps.ClimaTimeSteppers.extensions] @@ -617,11 +612,12 @@ version = "0.1.0+0" [[deps.DiffEqBase]] deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "c8b0bdee28a1addddb7ab939365fe6543d7d2d0d" +git-tree-sha1 = "03b9555f4c3a7c2f530bb1ae13e85719c632f74e" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.149.2" +version = "6.151.1" [deps.DiffEqBase.extensions] + DiffEqBaseCUDAExt = "CUDA" DiffEqBaseChainRulesCoreExt = "ChainRulesCore" DiffEqBaseDistributionsExt = "Distributions" DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] @@ -634,6 +630,7 @@ version = "6.149.2" DiffEqBaseUnitfulExt = "Unitful" [deps.DiffEqBase.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" @@ -922,9 +919,9 @@ version = "4.1.1" [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.13.2+0" [[deps.FreeTypeAbstraction]] deps = ["ColorVectorSpace", "Colors", "FreeType", "GeometryBasics"] @@ -966,9 +963,9 @@ version = "6.2.1+6" [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "68e8ff56a4a355a85d2784b94614491f8c900cde" +git-tree-sha1 = "38cb19b8a3e600e509dc36a6396ac74266d108c1" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "10.1.0" +version = "10.1.1" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -1240,10 +1237,10 @@ uuid = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" version = "0.8.29" [[deps.JLD2]] -deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"] -git-tree-sha1 = "dca9ff5abdf5fab4456876bc93f80c59a37b81df" +deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Reexport", "Requires", "TranscodingStreams", "UUIDs", "Unicode"] +git-tree-sha1 = "bdbe8222d2f5703ad6a7019277d149ec6d78c301" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.4.47" +version = "0.4.48" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -1320,12 +1317,6 @@ git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" version = "3.100.2+0" -[[deps.LDLFactorizations]] -deps = ["AMD", "LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "70f582b446a1c3ad82cf87e62b878668beef9d13" -uuid = "40e66cde-538c-5869-a4ad-c39174c6795b" -version = "0.10.1" - [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" @@ -1486,14 +1477,20 @@ deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearOperators]] -deps = ["FastClosures", "LDLFactorizations", "LinearAlgebra", "Printf", "Requires", "SparseArrays", "TimerOutputs"] -git-tree-sha1 = "f06df3a46255879cbccae1b5b6dcb16994c31be7" +deps = ["FastClosures", "LinearAlgebra", "Printf", "Requires", "SparseArrays", "TimerOutputs"] +git-tree-sha1 = "ae5d90280094348c32fda8bc8b5a88bb16514d43" uuid = "5c8ed15e-5a4c-59e4-a42b-c7e8811fb125" -version = "2.7.0" -weakdeps = ["ChainRulesCore"] +version = "2.8.0" [deps.LinearOperators.extensions] + LinearOperatorsCUDAExt = "CUDA" LinearOperatorsChainRulesCoreExt = "ChainRulesCore" + LinearOperatorsLDLFactorizationsExt = "LDLFactorizations" + + [deps.LinearOperators.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + LDLFactorizations = "40e66cde-538c-5869-a4ad-c39174c6795b" [[deps.LittleCMS_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll"] @@ -1996,6 +1993,11 @@ git-tree-sha1 = "f2bfddd629ba7a53ed789d6427d64e0e4c378ef8" uuid = "3349acd9-ac6a-5e09-bcdb-63829b23a429" version = "1.0.15" +[[deps.PtrArrays]] +git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.1.0" + [[deps.QOI]] deps = ["ColorTypes", "FileIO", "FixedPointNumbers"] git-tree-sha1 = "18e8f4d1426e965c7b532ddd260599e1510d26ce" @@ -2014,9 +2016,9 @@ uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.RRTMGP]] deps = ["Adapt", "Artifacts", "CUDA", "ClimaComms", "DocStringExtensions", "GaussQuadrature", "Random", "StaticArrays"] -git-tree-sha1 = "4befbe654262330dc7dace3b8841da3dce5b4f91" +git-tree-sha1 = "43dba55be8b80a2af4b4e901537d9f29fcd0d2e2" uuid = "a01a1ee8-cea4-48fc-987c-fc7878d79da1" -version = "0.13.2" +version = "0.13.4" weakdeps = ["ClimaParams"] [deps.RRTMGP.extensions] @@ -2061,9 +2063,9 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "f599a896fb28043dd63a4d372231dfcbdd117394" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.16.0" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -2119,10 +2121,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.7.1" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6ed52fdd3382cf21947b15e8870ac0ddbff736da" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.0+0" +version = "0.4.2+0" [[deps.RootSolvers]] deps = ["ForwardDiff"] @@ -2158,9 +2160,9 @@ version = "0.1.0" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "397367599b9526a49cc06a4db70835807498b561" +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.36.1" +version = "2.38.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2200,9 +2202,9 @@ version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "363c4e82b66be7b9f7c7c7da7478fdae07de44b9" +git-tree-sha1 = "90b4f68892337554d31cdcdbe19e48989f26c7e6" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.2" +version = "1.4.3" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -2313,9 +2315,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -2488,9 +2490,9 @@ version = "0.10.0" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] -git-tree-sha1 = "f548a9e9c490030e545f72074a41edfd0e5bcdd7" +git-tree-sha1 = "5a13ae8a41237cff5ecf34f73eb1b8f42fff6531" uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" -version = "0.5.23" +version = "0.5.24" [[deps.TranscodingStreams]] git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156" @@ -2559,9 +2561,9 @@ version = "0.2.1" [[deps.UnsafeAtomicsLLVM]] deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" +git-tree-sha1 = "d9f5962fecd5ccece07db1ff006fb0b5271bdfdd" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" +version = "0.1.4" [[deps.VTKBase]] git-tree-sha1 = "c2d0db3ef09f1942d08ea455a9e252594be5f3b6" @@ -2588,9 +2590,9 @@ version = "1.19.1" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "532e22cf7be8462035d092ff21fada7527e2c488" +git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.12.6+0" +version = "2.12.7+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -2682,10 +2684,10 @@ uuid = "477f73a3-ac25-53e9-8cc3-50b2fa2566f0" version = "1.1.2+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.9.0+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"]