diff --git a/CHANGELOG.md b/CHANGELOG.md index 7fab8a4..bb33304 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -4,31 +4,35 @@ ### Fixed + - Changed `--symlink_dir` to `--symlink-dir` for consistency + ### Changed + - Use `basename` when `symlink_dir` provided + ## [0.9.1] ### Added -- Added additional tests to ensure that Bonsai input data can be re-cast into a `PipelineResult` data format. + - Added additional tests to ensure that Bonsai input data can be re-cast into a `PipelineResult` data format. ### Fixed ### Changed -- Fixed some Pylint warnings. -- Pylint ignores pysam functions since they are generated. + - Fixed some Pylint warnings. + - Pylint ignores pysam functions since they are generated. ## [0.9.0] ### Added -- Added Shigapass output -- Added tests for the Shigapass parser. + - Added Shigapass output + - Added tests for the Shigapass parser. ### Fixed -- Fixed minor issues with the ShigaPass parser. + - Fixed minor issues with the ShigaPass parser. ### Changed @@ -38,7 +42,7 @@ ### Fixed -- Reordered lineage data models in the method index. + - Reordered lineage data models in the method index. ### Changed @@ -48,11 +52,11 @@ ### Fixed -- Updated lineage parser to work with TbProfiler v6.2 + - Updated lineage parser to work with TbProfiler v6.2 ### Changed -- Changes lineage datamodel to reflect changes in TbProfiler output + - Changes lineage datamodel to reflect changes in TbProfiler output ## [0.8.1]