setup.py

# coding: utf-8

from os import path

from setuptools import find_packages, setup

setup(
    name="gens",
    version="2.1.1",
    description="Gens is a web-based interactive tool to visualize genomic copy number profiles from WGS data.",
    license="MIT",
    author="Ronja, Markus Johansson",
    classifiers=[
        "Development Status :: 5 - Production/Stable",
        "Intended Audience :: Developers",
        "License :: OSI Approved :: MIT License",
        "Programming Language :: Python",
        "Programming Language :: Python :: 3.5",
        "Programming Language :: Python :: 3.6",
        "Programming Language :: Python :: 3.7",
        "Programming Language :: Python :: 3.8",
        "Programming Language :: Python :: 3.9",
    ],
    keywords=["Flask", "Genomics", "WGS"],
    packages=find_packages(),
    zip_safe=False,
    install_requires=[
        "Click",
        "Flask",
        "flask-caching",
        "pymongo>=3.9.0",
        "gtfparse>=1.2.0",
        "pysam>=0.15.4",
        "pyyaml",
        "attrs",
        "cattrs",
        "connexion==2.14.2",
        "flask-compress",
        "tabulate",
    ],
    setup_requires=["pytest-runner"],
    tests_require=["pytest", "mongomock"],
    entry_points={
        "console_scripts": ["gens=gens.commands:cli"],
    },
    package_data={
        "gens": [
            "gens/templates/*.html",
            "gens/static/**/*",
            "gens/static/**/*",
            "scout/blueprints/**/templates/*.html",
            "scout/blueprints/**/static/*",
            "gens/openapi/openapi.yaml",
        ]
    },
    include_package_data=True,
)