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Annotation only workflow crashes due to missing Pathogenicity INFO field (MT specific) #227

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Jakob37 opened this issue Sep 13, 2024 · 0 comments

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bug

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Jakob37 commented Sep 13, 2024

Seems genmod requires the Pathogenicity INFO field to be present, but it was not in my RNA-seq run.

Unsure whether this is due to no MT variants being present in my variant file.

Ideally, the workflow should be able to deal with not having MT variants present.

A workaround is to add the INFO field to the header, this worked for me when running it manually.

Jakob37 added the bug label

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