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Crash early if sample ID mismatches with ID in VCF header #229

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Jakob37 opened this issue Sep 18, 2024 · 0 comments
Open

Crash early if sample ID mismatches with ID in VCF header #229

Jakob37 opened this issue Sep 18, 2024 · 0 comments

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@Jakob37
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Jakob37 commented Sep 18, 2024

Currently, if you run with a different name from the one in the VCF file, the pipeline crashes far later in the inher_model step, where the Peddy ID (sample ID in the CSV) is matched to the VCF ID.

It would be desirable to crash early, i.e. do a step early on in the pipeline whether the IDs are correctly matching.

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