diff --git a/README.md b/README.md index 94f1b08..88e043a 100644 --- a/README.md +++ b/README.md @@ -41,6 +41,14 @@ All individuals described in the [ped](http://pngu.mgh.harvard.edu/~purcell/plin See examples in the folder ```genmod/examples```. +**From version 1.9 genmod can split multiallelic calls in vcf:s, use flag -split/--split_variants.** + +To get an example of how splitting variants work, run genmod on the file ```examples/multi_allele_example.vcf``` with the dominant trio. +That is: + ```genmod annotate examples/multi_allele_example.vcf -f examples/dominant_trio.ped -split``` + +Compare the result when not using the ```-split``` flag. + Genmod is distributed with a annotation database that is built from the refGene data. If the user wants to build a new annotation set use the command below: diff --git a/setup.py b/setup.py index 854268f..a2e03d2 100644 --- a/setup.py +++ b/setup.py @@ -16,7 +16,7 @@ # long_description = file.read() setup(name='genmod', - version='1.8.3', + version='1.9', description='Annotate genetic inheritance models in variant files', author = 'Mans Magnusson', author_email = 'mans.magnusson@scilifelab.se',