Internal CLI used by the CoExpNetViz Cytoscape app. You will want to use the app instead.
conda install -c coexpnetviz coexpnetviz
. Run with coexpnetviz --help
.
Guide for developing coexpnetviz-python itself. It's analog to varbio's dev guide.
Versioning: The Cytoscape app pins to the major version of this lib, e.g.
coexpnetviz==5.*
and autoupdates so long as its the same major version.
Whenever the json API changes in a way that could break the Cytoscape app
versions using it you must bump the major version (pytil explains where to bump
it) and remember to update the BACKEND_MAJOR_VERSION var in the Cytoscape app
as well. Other than that just bump as you normally would in semver.