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README.md

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Internal CLI used by the CoExpNetViz Cytoscape app. You will want to use the app instead.

Links

Usage

conda install -c coexpnetviz coexpnetviz. Run with coexpnetviz --help.

Development guide

Guide for developing coexpnetviz-python itself. It's analog to varbio's dev guide.

Versioning: The Cytoscape app pins to the major version of this lib, e.g. coexpnetviz==5.* and autoupdates so long as its the same major version. Whenever the json API changes in a way that could break the Cytoscape app versions using it you must bump the major version (pytil explains where to bump it) and remember to update the BACKEND_MAJOR_VERSION var in the Cytoscape app as well. Other than that just bump as you normally would in semver.