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@ComputationalSystemsBiology

Computational Systems Biology group

Developing efficient tools to process functional genomic data and build computational models of regulatory networks.

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  1. Single-cell-RNA-seq Single-cell-RNA-seq Public

    Workflows for handling automatic single-cell RNA seq analysis

    Java 8

  2. ExoProfiler ExoProfiler Public

    Analyzing transcription factor (TF) binding sites using ChIP-exo data.

    Python 5 1

  3. GINsimScripts GINsimScripts Public

    Python 3

  4. BCMLtoSBMLconverter BCMLtoSBMLconverter Public

    A set of Python scripts to convert BCML format to SBML.

    Python

  5. EoulsanDockerFiles EoulsanDockerFiles Public

  6. echinodal_notebook echinodal_notebook Public

    Analysis of the GRN governing the dorsal-ventral axis specification of the sea urchin Paracentrotus Lividus using logical modelling tools (GINsim, EpiLog, MaBoSS)

    HTML

Repositories

Showing 6 of 6 repositories
  • echinodal_notebook Public

    Analysis of the GRN governing the dorsal-ventral axis specification of the sea urchin Paracentrotus Lividus using logical modelling tools (GINsim, EpiLog, MaBoSS)

    ComputationalSystemsBiology/echinodal_notebook’s past year of commit activity
    HTML 0 0 0 0 Updated Jul 17, 2020
  • Single-cell-RNA-seq Public

    Workflows for handling automatic single-cell RNA seq analysis

    ComputationalSystemsBiology/Single-cell-RNA-seq’s past year of commit activity
    Java 8 0 0 0 Updated Jul 31, 2018
  • ComputationalSystemsBiology/EoulsanDockerFiles’s past year of commit activity
    0 0 0 0 Updated Jun 19, 2018
  • ExoProfiler Public

    Analyzing transcription factor (TF) binding sites using ChIP-exo data.

    ComputationalSystemsBiology/ExoProfiler’s past year of commit activity
    Python 5 GPL-3.0 1 1 0 Updated Dec 21, 2017
  • ComputationalSystemsBiology/GINsimScripts’s past year of commit activity
    Python 3 GPL-3.0 0 0 0 Updated Sep 21, 2016
  • BCMLtoSBMLconverter Public

    A set of Python scripts to convert BCML format to SBML.

    ComputationalSystemsBiology/BCMLtoSBMLconverter’s past year of commit activity
    Python 0 0 0 0 Updated Mar 6, 2016

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