diff --git a/05-control_calidad.Rmd b/05-control_calidad.Rmd index 7d4bb44..cef4c54 100644 --- a/05-control_calidad.Rmd +++ b/05-control_calidad.Rmd @@ -387,12 +387,12 @@ Después de filtar los droplets, el filtrado por expresión mitocondrial nos va ```{r pbmc_chrMT_ayuda} sce.pbmc <- sce.pbmc[, which(e.out$FDR <= 0.001)] is.mito <- grep("^MT-", rowData(sce.pbmc)$Symbol) -sce.pmbc <- addPerCellQC(sce.pbmc, subsets = list(MT = is.mito)) +sce.pbmc <- addPerCellQC(sce.pbmc, subsets = list(MT = is.mito)) discard.mito <- - isOutlier(sce.pmbc$subsets_MT_percent, type = "higher") + isOutlier(sce.pbmc$subsets_MT_percent, type = "higher") plot( - sce.pmbc$sum, - sce.pmbc$subsets_MT_percent, + sce.pbmc$sum, + sce.pbmc$subsets_MT_percent, log = "x", xlab = "Total count", ylab = "Mitochondrial %"