docker-compose.yml

version: "3.9"
services:

  mongo:
    image: $IMAGES_MONGO
    container_name: mongo
    restart: unless-stopped
    volumes:
      - ${HOST_PATHS_PROJECT_DATA_PATH}/mongo:/data/db

  postgis:
    image: $IMAGES_POSTGIS
    container_name: postgis
    restart: unless-stopped
    volumes:
      - ${HOST_PATHS_PROJECT_DATA_PATH}/postgis/data:/var/lib/postgresql/data
    deploy:
      resources:
        # limits or reservations ?
        reservations:
          memory: 8G

  elasticsearch:
    image: $IMAGES_ELASTICSEARCH
    container_name: elasticsearch
    restart: unless-stopped
    ports:
      - "9200:9200"
      - "9300:9300"
    volumes:
      - ${HOST_PATHS_PROJECT_DATA_PATH}/elasticsearch/data:/var/lib/elasticsearch/data
    environment:
      - discovery.type=single-node
      - xpack.security.enabled=false
    ulimits:
      memlock:
        soft: -1
        hard: -1
    mem_limit: 17179869184

  logstash:
    container_name: logstash
    image: $IMAGES_LOGSTASH
    command: logstash -f /usr/share/logstash/config/logstash.conf
    volumes:
      - ./configs/logstash:/usr/share/logstash/config
      - ./configs/logstash:/usr/share/logstash/drivers
    environment:
      - POSTGRES_USER=$POSTGRES_USER
      - POSTGRES_PASS=$POSTGRES_PASS
    depends_on:
      - elasticsearch
      - postgis

  rabbitmq:
    image: $IMAGES_RABBITMQ
    container_name: rabbitmq
    restart: unless-stopped

  bioformat:
    image: $IMAGES_BIOFORMAT
    container_name: bioformat
    restart: unless-stopped
    volumes:
      - ${HOST_PATHS_PROJECT_DATA_PATH}/images:$CONTAINER_PATHS_IMAGES

  pims-cache:
    image: $IMAGES_PIMS_CACHE
    container_name: pims-cache
    restart: unless-stopped

  pims: 
    image: $IMAGES_PIMS
    container_name: pims
    restart: unless-stopped
    depends_on:
      - nginx
      - pims-cache
      - rabbitmq
    volumes:
      - ${HOST_PATHS_PROJECT_DATA_PATH}/images:$CONTAINER_PATHS_IMAGES
      - ${HOST_PATHS_PROJECT_DATA_PATH}/upload:$CONTAINER_PATHS_UPLOADED
      - ${HOST_PATHS_DATASET_PATH}/dataset:$CONTAINER_PATHS_DATASET
    deploy:
      resources:
        # limits or reservations ?
        reservations:
          memory: 4G

  core:
    image: $IMAGES_CORE
    container_name: core
    restart: unless-stopped
    depends_on:
      - nginx
      - postgis
      - mongo
      - rabbitmq
    volumes:
      - /etc/localtime:/etc/localtime

  web_ui:
    image: $IMAGES_WEB_UI
    container_name: web_ui
    restart: unless-stopped
    volumes:
      - /etc/localtime:/etc/localtime

  nginx:
    image: $IMAGES_NGINX
    container_name: nginx
    restart: unless-stopped
    depends_on:
      - web_ui
    ports:
      - 80:80
    volumes:
      - ${HOST_PATHS_PROJECT_DATA_PATH}/upload:$CONTAINER_PATHS_UPLOADED

  # to map nginx ip with urls to host's /etc/hosts
  etc_hosts_rewriter:
    image: alpine:latest
    entrypoint: ["/bin/sh", "/cm_configs/rewrite.sh"]
    depends_on:
      - nginx
    volumes:
      - /etc:/local_etc/