From 2980a482567e013de17efa319c1f5598096da7b0 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Cezary=20Skrzy=C5=84ski?=
 <cezary.skrzynski@ng-analytics.com>
Date: Tue, 10 Sep 2024 14:29:33 +0200
Subject: [PATCH] Revert unnecessary changes

---
 .github/workflows/CI.yml |  1 -
 .gitignore               |  1 -
 src/CMakeLists.txt       |  3 ---
 src/inputFile.h          |  4 ++--
 src/inputFile_impl.h     | 38 --------------------------------------
 5 files changed, 2 insertions(+), 45 deletions(-)

diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml
index ed6f5fe6..3d8c352a 100644
--- a/.github/workflows/CI.yml
+++ b/.github/workflows/CI.yml
@@ -117,7 +117,6 @@ jobs:
             -DMPIEXEC_MAX_NUMPROCS=2 -DMPIEXEC_PREFLAGS="--oversubscribe" \
             -DCMAKE_PREFIX_PATH="$HOME/kokkos;$HOME/arborx;$HOME/ALL" \
             -DCMAKE_CXX_COMPILER=${{ matrix.cxx }} \
-            -DCabana_DISABLE_CAJITA_DEPRECATION_WARNINGS=ON \
             -DCMAKE_BUILD_TYPE=${{ matrix.cmake_build_type }}
           cmake --build build --parallel 2
           cmake --install build
diff --git a/.gitignore b/.gitignore
index c429bde9..40e1f1ae 100644
--- a/.gitignore
+++ b/.gitignore
@@ -2,4 +2,3 @@
 build
 .cproject
 .project
-*.swp
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index e2cdaf11..48050394 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -89,9 +89,6 @@ target_include_directories(CabanaMD PUBLIC ${CMAKE_CURRENT_SOURCE_DIR}
                                     ${CMAKE_CURRENT_SOURCE_DIR}/system_types
                                     $<INSTALL_INTERFACE:${CMAKE_INSTALL_INCLUDEDIR}>
                                     $<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}>)
-if(CabanaMD_ENBALE_ALL)
-  target_link_libraries(CabanaMD ALL::ALL)
-endif()
 
 #------------------------------------------------------------
 
diff --git a/src/inputFile.h b/src/inputFile.h
index 25b5d793..d70cd546 100644
--- a/src/inputFile.h
+++ b/src/inputFile.h
@@ -179,8 +179,8 @@ class InputFile
 
     int binning_type = BINNING_LINKEDCELL;
 
-    int comm_type;
-    int comm_exchange_rate;
+    int comm_type = COMM_MPI;
+    int comm_exchange_rate = 20;
     double comm_ghost_cutoff;
 
     int force_type = FORCE_LJ;
diff --git a/src/inputFile_impl.h b/src/inputFile_impl.h
index b4172607..9213a716 100644
--- a/src/inputFile_impl.h
+++ b/src/inputFile_impl.h
@@ -79,46 +79,8 @@ InputFile<t_System>::InputFile( InputCL commandline_, t_System *system_ )
     output_file = commandline.output_file;
     error_file = commandline.error_file;
 
-    // set defaults (matches ExaMiniMD LJ example)
-
-    nsteps = 0;
-
-    thermo_rate = 0;
-    dumpbinary_rate = 0;
-    correctness_rate = 0;
-    vtk_rate = 0;
-    dumpbinaryflag = false;
-    correctnessflag = false;
-    timestepflag = false;
-
-    lattice_offset_x = 0.0;
-    lattice_offset_y = 0.0;
-    lattice_offset_z = 0.0;
-    box[0] = 0;
-    box[2] = 0;
-    box[4] = 0;
-    box[1] = 40;
-    box[3] = 40;
-    box[5] = 40;
-
-    units_style = UNITS_LJ;
-    lattice_style = LATTICE_FCC;
-    lattice_constant = 0.8442;
-
-    temperature_target = 1.4;
-    temperature_seed = 87287;
-
-    nsteps = 100;
-    thermo_rate = 10;
-
-    neighbor_skin = 0.3;
-    neighbor_skin = 0.0; // for metal and real units
-    max_neigh_guess = 50;
-    comm_exchange_rate = 20;
     comm_ghost_cutoff = std::pow( ( 4.0 / lattice_constant ), ( 1.0 / 3.0 ) ) *
                         20.0; // 20 lattice constants
-
-    force_cutoff = 2.5;
 }
 
 template <class t_System>