Dockerfile

FROM ubuntu:jammy

# Install dependencies
RUN apt update && \
    apt install -y --no-install-recommends ssh wget unzip git python3.11 python3-pip && \
    cd /usr/bin/ && \
    ln -s python3.11 python

# Install dcm2niix/v1.0.20211006
RUN cd /tmp && \
    wget https://github.com/rordenlab/dcm2niix/releases/download/v1.0.20211006/dcm2niix_lnx.zip && \
    unzip -d /usr/bin/ dcm2niix_lnx.zip

# Fix for dm_sftp.py's pysftp hostkey issues
RUN mkdir /.ssh && \
    ln -s /.ssh /root/.ssh && \
    chmod 777 /.ssh && \
    ssh-keyscan github.com >> /.ssh/known_hosts && \
    chmod 666 /.ssh/known_hosts

ENV PATH="/datman/bin:${PATH}"
ENV PYTHONPATH=/datman:${PYTHONPATH}
ENV DM_CONFIG=/config/main_config.yml
ENV DM_SYSTEM=docker

COPY . /datman

RUN cd /datman && \
    python -m pip install --upgrade pip && \
    python -m pip install .

CMD ["/bin/bash"]