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pyproject.toml
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[build-system]
requires = ["setuptools >= 45", "wheel", "setuptools_scm[toml]>=6.2"]
build-backend = "setuptools.build_meta"
[tool.setuptools.packages.find]
include = ["datman*"]
[tool.setuptools_scm]
[project]
name = "datman"
requires-python = ">=3.8"
description = "Datman is a set of scripts for managing MRI data in XNAT, metadata in REDCap, and for performing visual quality control."
license = {text = "Apache-2.0"}
readme = "README.md"
maintainers = [
{name = "TIGRLab", email = "[email protected]"},
{name = "Dawn Smith", email = "[email protected]"}
]
keywords = ["neuroimaging", "mri", "fmri"]
classifiers = [
"Topic :: Scientific/Engineering :: Image Recognition",
"Development Status :: 4 - Beta",
"Environment :: Console",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: BSD License",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11"
]
dependencies = [
"docopt == 0.6.2",
"dcm2bids==3.1.1",
"nibabel == 5.2.1",
"nilearn == 0.10.3",
"numpy == 1.24.4",
"pandas == 2.0.3",
"pybids == 0.16.4",
"pydicom == 2.4.4",
"pysftp == 0.2.9",
"pyxnat == 1.6.2",
"pyyaml == 6.0.1",
"requests == 2.32.3",
"urllib3 == 2.3.0",
"wrapt == 1.16.0"
]
dynamic = ["version"]
[urls]
homepage = "http://imaging-genetics.camh.ca/datman/"
documentation = "http://imaging-genetics.camh.ca/datman/"
repository = "https://github.com/tigrlab/datman"
[project.optional-dependencies]
test = [
"mock",
"pytest",
"pytest-cov"
]
docs = [
"nbsphinx",
"sphinx ~= 4.3.0",
"sphinx_rtd_theme",
"sphinxcontrib-apidoc ~= 0.3.0",
"sphinxcontrib-napoleon",
"sphinxcontrib-versioning"
]
build = [
"build",
"twine"
]
style = [
"flake8 ~= 3.7.0",
"flake8-pyproject",
"pycodestyle",
"pylint"
]
all = [
"datman[test]",
"datman[docs]",
"datman[style]",
"datman[build]"
]
[tool.flake8]
max-line-length = 80
doctests = false
select = ["C", "E", "F", "W", "B"]
extend-exclude = [
"*build/",
"docs/",
"*dist/"
]
count = true
[tool.pytest.ini_options]
addopts = "-v --doctest-modules"
testpaths = ["tests"]
[tool.pylint.main]
fail-under = 7
ignore-paths = ['docs']
[tool.pylint."messages control"]
disable = [
"logging-format-interpolation"
]