New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

What's going on in src/SamSegmentMapper.cpp:226 #13

Open

vinjana opened this issue Jan 23, 2024 · 1 comment

Assignees

Member

vinjana commented Jan 23, 2024 •

edited

Loading

In src/SamSegmentMapper.cpp:226 it says

            if (!chrConverter.isTechnical(alignment.getMateChrIndex()) &&
                !(alignment.getMateChrIndex() == 2 &&
                  (alignment.getMatePos() / 10000 == 3314))) {

This seems like special code for hg37 ... 🤔

The text was updated successfully, but these errors were encountered:

Member Author

vinjana commented Mar 19, 2024

Added isInIgnoredRegion to ChrConverter.

vinjana self-assigned this

vinjana mentioned this issue

hg38 support #6

Draft

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment