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Align ATAC-seq with Hisat2? #409

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yjiang296 opened this issue Feb 23, 2023 · 0 comments
Open

Align ATAC-seq with Hisat2? #409

yjiang296 opened this issue Feb 23, 2023 · 0 comments

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@yjiang296
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Hello! I would like to align my ATAC-seq to a graph genome, and I'm wondering if I can do with hisat2. How do bowtie2 and hisat2 perform differently in this circumstances? Hoping to hearing from you, thanks!
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